Cucsat.G12824 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G12824
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	60S ribosomal protein L28-2-like
Location	ctg1838: 5248865 .. 5250837 (-)
RNA-Seq Expression	Cucsat.G12824
Synteny	Cucsat.G12824

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAATTAGGGTTTAGTATAAAGAGTGGAAACTCCCACTTCATTTTGCTGCACGCCCCATTTTACCTATCGGAGCATTGGTCAGGCAAAACCCTAACGCAAATCAGGTTTTTCGATTTCTCTCAACGATTACGTTTGTTTCTTTGAAATTGTTTGTGTTTCCGATGTAATACTATGCGTATGTATGATTTTACTCAAGCTAGACTCTCTTCTGAGATCTCTTTTTTCGTCTATTTGTATCGTTGTTGCAGTGCCAGAAGAAGACGATGGCGGCGGTTCCAGGACAACTGATTTGGGAGATTGTGAAGAGGAACAACTCTTTTTTGGTGAAGGAGTTTGGAAGGGGAACAGCTGGTGTTCAGTTCAGCAAAGAGGCCAACAATTTATACAATCTGAACTCCTACAAGCATTCTGGTTAGTCATCTTAAATATTCTGATTAACGAGGCGTTCTTTTCATTTTAATTGCAATGCTAGTGGATTAAGTTTGGAAGATTTCGTTTGAACGTCTATACAACTTAGAGACGGGATCGTTAGTATATTATGTCGTTGTTTGAAGTTTGTGTATTGTTTAAGTAGAGTGTAGATGAAATTGAAATATTAGAGTGTTTGTTTGCTTTGATTCTATGAAGTTTTTCAAATGACCAAACCGCTGCTATGTTATTGTTTGAATTCCTGATGTTCTGCTCAAGTGGAGGTTATCTAGATTAGATGTGTGAGGGGCCAGCGAACTGATATATAGTTGTATACGATGTTGTAAATCGTTTGAAACTTCGTTTGTGCAGCATCTGGGAGGGTCGTAGAATAGAGATTGCATGGTCATTGTGCTTGTCCAATTAATGTTTATGCTATCGGTTCTTTTATTCTTAGATTAGATGTGTTCAAGAAATTATTTAGTTATTGGGTTACATGTTCGACAATTGATTCTGCGGTTTTCTTGAATACTTCCAACCGTTGCTAATCTCTTTGTACTAGAAAACATATTTGAGTATTTAATAATTTTTTGTCCTTGTTGAACAGTTCGGTTTATTGTCTAATATCTATTCGAATTTCATTGTTTTAGAACTTTATTAATAGTGGTGAGAGGAGTTTAAGGGGATTTTTTCTTTTCTTCATTATTTTTATTGTATGTTTTGGATTGAAGATAATATTGCCAATAGTCGGTGCAGTTTATGCTTAGGGTTCATTAAGATTCTTGTGTTTTAGGTTTGGCCAACAAGAAGACTGTCACAATTCAACCTGGAGGCAAAGATCAATCCATTTTGCTTGCAACAACCAAGAGCAAGAAACAGAACAAACCTTCTTCATCGCTTCATAAATCTTTGATGAAGAAAGAGTTCCGTCGGATGGCAAAAGCTGTAACAAACCAGGTATAAACAGCAGACCTTAATTATCTGTTGAGTATGACTTGTTCCTAATTAATACCATGGAAATAGTTGCATTAACTCACTCACCACACGAATGATATCAGGTGGCAGATAACTACTACAGGCCAGATCTGAAGAAGGCTGCCTTGGCAAGATTGAGTGCTGTAAACAGGAGCCTGAAGGTTGCCAAGTCTGGTGTTAAGAAGAGGAACAGGCAAGCTTTGAAATCAAAGAAGTGAGATTTAGGAGAATGATAAATGAGATTTTGCGTTTGCCATTGTGTTTTATGTTGGGATGTCAACCTTTTTAGTTCAGTTTGGAATCTGAAGAATAGTCTTGCTATAGATGTTTTTTTTTGCTGTGTTTTGCATTATTATTATATGATTGTTTTCTTGATGTGAAGAACTTTTGGAAGGCAATCTTATGACTTTGTTTTGGTATTGTGTTATTTTAGTTTGTAGTTGAAAATTACTAAGATATTTCATGATGCTTTGCGAAGGCTACTTAATCTAGAAAATGAATAATAGCAACCTTACCTTTTGGTGATTTATGTTAGATCTTCCCAATCATCCCGTGTATGATGCGTTGATTTCATTTTCCATTTAAATCC

Coding sequence (CDS)

ATGGCGGCGGTTCCAGGACAACTGATTTGGGAGATTGTGAAGAGGAACAACTCTTTTTTGGTGAAGGAGTTTGGAAGGGGAACAGCTGGTGTTCAGTTCAGCAAAGAGGCCAACAATTTATACAATCTGAACTCCTACAAGCATTCTGGTTTGGCCAACAAGAAGACTGTCACAATTCAACCTGGAGGCAAAGATCAATCCATTTTGCTTGCAACAACCAAGAGCAAGAAACAGAACAAACCTTCTTCATCGCTTCATAAATCTTTGATGAAGAAAGAGTTCCGTCGGATGGCAAAAGCTGTAACAAACCAGGTGGCAGATAACTACTACAGGCCAGATCTGAAGAAGGCTGCCTTGGCAAGATTGAGTGCTGTAAACAGGAGCCTGAAGGTTGCCAAGTCTGGTGTTAAGAAGAGGAACAGGCAAGCTTTGAAATCAAAGAAGTGA

Protein sequence

MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQPGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQALKSKK

Homology

[Close]

BLAST of Cucsat.G12824 vs. ExPASy Swiss-Prot
Match: Q9M0E2 (60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.1e-55
Identity = 109/143 (76.22%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVK+FGRG A VQFSKE+NNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
             GKDQ ++L TTK+K+QNKP  S++KS++KKEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of Cucsat.G12824 vs. ExPASy Swiss-Prot
Match: O82204 (60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.9e-54
Identity = 108/143 (75.52%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP  S++KS++KKEF RM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of Cucsat.G12824 vs. ExPASy Swiss-Prot
Match: Q962T2 (60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 48/127 (37.80%), Postives = 68/127 (53.54%), Query Frame = 0


Query: 8   LIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQPGGKDQS 67
           L W I++ NN+FLVK   +      FSKE NN+ NLNSY+++GL  KK V +      + 
Sbjct: 5   LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKG 64

Query: 68  ILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLSAVNR 127
             +   K+K  NKP+ +  +   K   RR    V   +  N+YR DL KA L R SA+ R
Sbjct: 65  FTVVYKKAKATNKPAKNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILR 124

Query: 128 SLKVAKS 135
           S +  K+
Sbjct: 125 SQRPIKA 128

[Close]

BLAST of Cucsat.G12824 vs. ExPASy Swiss-Prot
Match: P46779 (60S ribosomal protein L28 OS=Homo sapiens OX=9606 GN=RPL28 PE=1 SV=3)

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-11
Identity = 44/139 (31.65%), Postives = 78/139 (56.12%), Query Frame = 0


Query: 8   LIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQPGGKDQS 67
           L W +V+  +SFL+K   +      +S E NNL   NS++++GL ++KTV ++P    + 
Sbjct: 5   LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  ILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLSAVNR 127
           +++   +   Q KP++S  ++ + K  R    ++ + +  N YRPDL+ AA+ R SA+ R
Sbjct: 65  VVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 124

Query: 128 SLKVAKSGVKKRNRQALKS 147
           S K     VK++  +  KS
Sbjct: 125 SQKPVM--VKRKRTRPTKS 136

[Close]

BLAST of Cucsat.G12824 vs. ExPASy Swiss-Prot
Match: P41105 (60S ribosomal protein L28 OS=Mus musculus OX=10090 GN=Rpl28 PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 4.1e-11
Identity = 44/139 (31.65%), Postives = 78/139 (56.12%), Query Frame = 0


Query: 8   LIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQPGGKDQS 67
           L W +V+  +SFL+K   +      +S E NNL   NS++++GL ++KTV ++P    + 
Sbjct: 5   LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  ILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLSAVNR 127
           +++   +   Q KP++S  ++ + K  R    ++ + +  N YRPDL+ AA+ R SA+ R
Sbjct: 65  VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 124

Query: 128 SLKVAKSGVKKRNRQALKS 147
           S K     VK++  +  KS
Sbjct: 125 SQKPVV--VKRKRTRPTKS 136

[Close]

BLAST of Cucsat.G12824 vs. NCBI nr
Match: XP_004146830.1 (60S ribosomal protein L28-2 [Cucumis sativus] >KGN59836.1 hypothetical protein Csa_000918 [Cucumis sativus])

HSP 1 Score: 277 bits (709), Expect = 1.11e-93
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148
           RLSAVNRSLKVAKSGVKKRNRQALKSKK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148

[Close]

BLAST of Cucsat.G12824 vs. NCBI nr
Match: XP_008447584.1 (PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447586.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >KAA0061117.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa] >TYK03788.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 273 bits (698), Expect = 5.26e-92
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148
           RLSAVNRSLKVAKSGVKKRNRQALKSKK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148

[Close]

BLAST of Cucsat.G12824 vs. NCBI nr
Match: XP_038886678.1 (60S ribosomal protein L28-2-like [Benincasa hispida])

HSP 1 Score: 271 bits (694), Expect = 2.29e-91
Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE+NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

[Close]

BLAST of Cucsat.G12824 vs. NCBI nr
Match: XP_022949503.1 (60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022998347.1 60S ribosomal protein L28-2-like [Cucurbita maxima] >XP_023523885.1 60S ribosomal protein L28-2-like [Cucurbita pepo subsp. pepo] >KAG7036445.1 60S ribosomal protein L28-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265 bits (677), Expect = 8.97e-89
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE+NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSIL ATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

[Close]

BLAST of Cucsat.G12824 vs. NCBI nr
Match: XP_022148100.1 (60S ribosomal protein L28-2-like [Momordica charantia])

HSP 1 Score: 264 bits (674), Expect = 2.24e-88
Identity = 140/144 (97.22%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAV GQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKP+S LHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQAL 144
           RLSAVNRSLKVAKSGVKKRNRQAL
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQAL 144

[Close]

BLAST of Cucsat.G12824 vs. ExPASy TrEMBL
Match: A0A0A0LIG3 (Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G849920 PE=3 SV=1)

HSP 1 Score: 277 bits (709), Expect = 5.35e-94
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148
           RLSAVNRSLKVAKSGVKKRNRQALKSKK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148

[Close]

BLAST of Cucsat.G12824 vs. ExPASy TrEMBL
Match: A0A1S3BIE3 (60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV=1)

HSP 1 Score: 273 bits (698), Expect = 2.55e-92
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148
           RLSAVNRSLKVAKSGVKKRNRQALKSKK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148

[Close]

BLAST of Cucsat.G12824 vs. ExPASy TrEMBL
Match: A0A5D3BXS0 (60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001760 PE=3 SV=1)

HSP 1 Score: 273 bits (698), Expect = 2.55e-92
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148
           RLSAVNRSLKVAKSGVKKRNRQALKSKK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148

[Close]

BLAST of Cucsat.G12824 vs. ExPASy TrEMBL
Match: A0A6J1K7P5 (60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493014 PE=3 SV=1)

HSP 1 Score: 265 bits (677), Expect = 4.34e-89
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE+NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSIL ATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

[Close]

BLAST of Cucsat.G12824 vs. ExPASy TrEMBL
Match: A0A6J1GC99 (60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111452830 PE=3 SV=1)

HSP 1 Score: 265 bits (677), Expect = 4.34e-89
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE+NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSIL ATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

The following BLAST results are available for this feature:

BLAST of Cucsat.G12824 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0E2	2.1e-55	76.22	60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1	[more]
O82204	3.9e-54	75.52	60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1	[more]
Q962T2	1.7e-12	37.80	60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1	[more]
P46779	3.1e-11	31.65	60S ribosomal protein L28 OS=Homo sapiens OX=9606 GN=RPL28 PE=1 SV=3	[more]
P41105	4.1e-11	31.65	60S ribosomal protein L28 OS=Mus musculus OX=10090 GN=Rpl28 PE=1 SV=2	[more]

BLAST of Cucsat.G12824 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146830.1	1.11e-93	100.00	60S ribosomal protein L28-2 [Cucumis sativus] >KGN59836.1 hypothetical protein C...	[more]
XP_008447584.1	5.26e-92	98.65	PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDI...	[more]
XP_038886678.1	2.29e-91	98.63	60S ribosomal protein L28-2-like [Benincasa hispida]	[more]
XP_022949503.1	8.97e-89	95.89	60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022998347.1 60S riboso...	[more]
XP_022148100.1	2.24e-88	97.22	60S ribosomal protein L28-2-like [Momordica charantia]	[more]

BLAST of Cucsat.G12824 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIG3	5.35e-94	100.00	Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G849...	[more]
A0A1S3BIE3	2.55e-92	98.65	60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV...	[more]
A0A5D3BXS0	2.55e-92	98.65	60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1K7P5	4.34e-89	95.89	60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493014 PE=...	[more]
A0A6J1GC99	4.34e-89	95.89	60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111452830 P...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029004	Ribosomal L28e/Mak16	PFAM	PF01778	Ribosomal_L28e	coord: 8..105 e-value: 6.0E-27 score: 94.6
None	No IPR available	GENE3D	3.30.390.110		coord: 1..105 e-value: 1.6E-32 score: 114.4
None	No IPR available	PANTHER	PTHR10544:SF19	60S RIBOSOMAL PROTEIN L28-1-LIKE	coord: 1..105
IPR002672	Ribosomal protein L28e	PANTHER	PTHR10544	60S RIBOSOMAL PROTEIN L28	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G12824.T1	Cucsat.G12824.T1	mRNA
Cucsat.G12824.T2	Cucsat.G12824.T2	mRNA
Cucsat.G12824.T5	Cucsat.G12824.T5	mRNA
Cucsat.G12824.T4	Cucsat.G12824.T4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome