Cucsat.G12760 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G12760
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	F-box domain-containing protein
Location	ctg1838: 3740318 .. 3741676 (-)
RNA-Seq Expression	Cucsat.G12760
Synteny	Cucsat.G12760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAATAGAAAGATGGCAACACATAAACCCTAAATTGCAATCTTCTTAGTCGTCTTCCAATAATTCACAATGAAAAGTCGGAGAAGAAGCCAAAATCCACAGTTTCCATCTCATATTATCGAAACTATTCTGTCTAAACTTTCCTTCTTCATTTTGCTTAATCTCAGGCCAGTTTGTAAAGCTTGGAACAATCTCATATTGACAAGTAAGTTGTTGAATCTAAATTCAAAGGCTAATTTATTTGCTCATATTACTCCTTATCAAAAGCTTTATTGTATTGACTTTGATTCCAAAATTTTGAAAGAAGGCAAGAAGAATTGCATTGTTCGTTCATTTACCTTCCATCCTCGTTTCTTCACATTTAAAATGGTCAATTCCTGTAATGGTCTCTTTTGTTTTGTGAACACCGAAATGATATCGGATCAATGTGAAAAGAAAAGCTTTGGATTGAAACAACCTTTAGCTATCATATTGAATCCGATGACGAATGAGGAACTCTCACTTAATAATTCTTTGAAGTTTTACCCCGGTTCCAGCTTCGGATTTGGTTATAGCCCTAATAAAAAGCAATACAAAATAGTTAAACTTTCTTTAATCAAGATTCCACATTTGAGGAGTTCATATGTGGCCTCACATTTGAGAAGTTCATATGTGGCTGAGATTTTTACAATTGGAAAATTTGCACGTGGTAGGCATGGAAAATGGCGGCAGAATAGGGTTCCAGCGGTACGAGTTCTTTGGAGCTTTGGTGTTTATTTGAATGGATCTCTTTATTGGAAGGCATACAACACTACGAGAATCAGGGCTAATGCTGTACTTTTACGTTTTGATGTAGAAGATGAGAAATTTGAAGTTGTTTCTTTTCCTCAAGTTGTGAGAGATGATGCTTTTCTTATTTCTTCTAATATTTGGATATTTAATAACACTCTATATGTGTCTTATTTTGACTCCAAGATTGATATGGGTAGCTTTCATGTGTGGAAGATGATGGAAGAAGATTATTCATGGGTTAAATTAGAACAAAAATTTGCTATTATGAAATCCATCAAAGACCATTTCTCATTGATGATGGTTTCTTATATAAGAGATTACATGATTAGATGTCATTTCCAACTCATCAAAGTTTTTGAAGATGAAACGATGTTGTTTCTTATTTCTCAAAGGGCTTTAATTTTGTATGACTCCAAGATCGACCAGTTTGAGGCCGTGCATGATGAACTGAATCAAGATCAGGATGGAAAATTATGTATTCATGAAATTGATTCATTAAATTTTGATTCTCTCGCAAAGACTCTGGGAGTAAATTGAATGCTTGATTTGATTTGTGTTCTATTTATTTATAAAGTCTTTTTTTGGTTCA

Coding sequence (CDS)

ATGGGTAGCTTTCATGTGTGGAAGATGATGGAAGAAGATTATTCATGGGTTAAATTAGAACAAAAATTTGCTATTATGAAATCCATCAAAGACCATTTCTCATTGATGATGGTTTCTTATATAAGAGATTACATGATTAGATGTCATTTCCAACTCATCAAAGTTTTTGAAGATGAAACGATGTTGTTTCTTATTTCTCAAAGGGCTTTAATTTTGTATGACTCCAAGATCGACCAGTTTGAGGCCGTGCATGATGAACTGAATCAAGATCAGGATGGAAAATTATGTATTCATGAAATTGATTCATTAAATTTTGATTCTCTCGCAAAGACTCTGGGAGTAAATTGA

Protein sequence

MGSFHVWKMMEEDYSWVKLEQKFAIMKSIKDHFSLMMVSYIRDYMIRCHFQLIKVFEDETMLFLISQRALILYDSKIDQFEAVHDELNQDQDGKLCIHEIDSLNFDSLAKTLGVN

Homology

[Close]

BLAST of Cucsat.G12760 vs. NCBI nr
Match: KGN59658.1 (hypothetical protein Csa_001357 [Cucumis sativus])

HSP 1 Score: 229 bits (584), Expect = 1.12e-71
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MGSFHVWKMMEEDYSWVKLEQKFAIMKSIKDHFSLMMVSYIRDYMIRCHFQLIKVFEDET 60
           MGSFHVWKMMEEDYSWVKLEQKFAIMKSIKDHFSLMMVSYIRDYMIRCHFQLIKVFEDET
Sbjct: 298 MGSFHVWKMMEEDYSWVKLEQKFAIMKSIKDHFSLMMVSYIRDYMIRCHFQLIKVFEDET 357

Query: 61  MLFLISQRALILYDSKIDQFEAVHDELNQDQDGKLCIHEIDSLNFDSLAKTLGVN 115
           MLFLISQRALILYDSKIDQFEAVHDELNQDQDGKLCIHEIDSLNFDSLAKTLGVN
Sbjct: 358 MLFLISQRALILYDSKIDQFEAVHDELNQDQDGKLCIHEIDSLNFDSLAKTLGVN 412

[Close]

BLAST of Cucsat.G12760 vs. NCBI nr
Match: XP_011652871.1 (F-box/kelch-repeat protein At3g06240 [Cucumis sativus])

HSP 1 Score: 138 bits (347), Expect = 3.01e-37
Identity = 78/128 (60.94%), Postives = 96/128 (75.00%), Query Frame = 0


Query: 1   MGSFHVWKMMEEDYSWVKLEQKFAIMKSIKDHFSLM-MVSYIR--------DYMIRC--- 60
           +G FHVWK+MEE YSW KLEQ+F I + I +H+S + ++ YIR        D+   C   
Sbjct: 182 IGRFHVWKLMEEGYSWFKLEQEFVIRQPISNHWSTVALLHYIRYLKYRGYYDFSSSCTRY 241

Query: 61  HFQLIKVFEDETMLFLISQRALILYDSKIDQFEAVHDELNQDQDGKLCIHEID-SLNFDS 115
           HFQLIKVFEDE MLFLIS++ALILYDSK +QFE  +++LNQDQDGKL I++ID SLN DS
Sbjct: 242 HFQLIKVFEDEKMLFLISRKALILYDSKTEQFEVTYNDLNQDQDGKLWIYDIDYSLNVDS 301

[Close]

BLAST of Cucsat.G12760 vs. NCBI nr
Match: KGN59660.1 (hypothetical protein Csa_001105 [Cucumis sativus])

HSP 1 Score: 138 bits (347), Expect = 2.99e-36
Identity = 78/128 (60.94%), Postives = 96/128 (75.00%), Query Frame = 0


Query: 1   MGSFHVWKMMEEDYSWVKLEQKFAIMKSIKDHFSLM-MVSYIR--------DYMIRC--- 60
           +G FHVWK+MEE YSW KLEQ+F I + I +H+S + ++ YIR        D+   C   
Sbjct: 300 IGRFHVWKLMEEGYSWFKLEQEFVIRQPISNHWSTVALLHYIRYLKYRGYYDFSSSCTRY 359

Query: 61  HFQLIKVFEDETMLFLISQRALILYDSKIDQFEAVHDELNQDQDGKLCIHEID-SLNFDS 115
           HFQLIKVFEDE MLFLIS++ALILYDSK +QFE  +++LNQDQDGKL I++ID SLN DS
Sbjct: 360 HFQLIKVFEDEKMLFLISRKALILYDSKTEQFEVTYNDLNQDQDGKLWIYDIDYSLNVDS 419

[Close]

BLAST of Cucsat.G12760 vs. NCBI nr
Match: XP_008450717.1 (PREDICTED: putative F-box protein At3g21120 [Cucumis melo] >TYK10199.1 putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 52.8 bits (125), Expect = 3.83e-05
Identity = 40/110 (36.36%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 3   SFHVWKMMEEDYSWVKLEQKFAIMKSIKDHFSLMMVSYIRDYMIRCHFQLIKVFEDETML 62
            +HVWKM +ED+SW K E   A+ ++I       + S  R + I  + QL+K  ED ++L
Sbjct: 280 DYHVWKM-KEDFSWSK-EFVLALPENI-------LHSLHRHHPIGYYLQLVKFCEDGSIL 339

Query: 63  FLISQRALILYDSKIDQFEAVHDELNQDQDGKLCIHEIDSLNFDSLAKTL 112
            L +   LI+YD K  Q E + D+  + ++G +  H+I+S +F+SL  TL
Sbjct: 340 CLCAGILLIVYDPKTQQMEILTDQDFEIKEG-MWFHQIESFSFNSLHNTL 379

[Close]

BLAST of Cucsat.G12760 vs. NCBI nr
Match: XP_022143297.1 (F-box/kelch-repeat protein At3g06240-like [Momordica charantia])

HSP 1 Score: 52.4 bits (124), Expect = 5.21e-05
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 0


Query: 3   SFHVWKMMEEDYSWVKLEQKFAIMKSIKDHFSLMMVSYIRDYMIRCHFQLIKVFEDETML 62
           ++HVWKM EED+SW K      ++  I  H   +  S +         QLI+  +D  +L
Sbjct: 280 AYHVWKM-EEDFSWTKAFD--VLLPKIYVHHRRLYDSQL---------QLIRACDDGKIL 339

Query: 63  FLISQRALILYDSKIDQFEAV-HDELNQDQDGKLCIHEIDSLNFDSLAKTL 112
            LIS   LILY+SK  + E++ +  LN  +     +H IDS NFDSL K L
Sbjct: 340 CLISGLDLILYNSKTQRMESLTYQHLNIKK-----VHRIDSFNFDSLHKIL 373

[Close]

BLAST of Cucsat.G12760 vs. ExPASy TrEMBL
Match: A0A0A0LCZ3 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G836430 PE=4 SV=1)

HSP 1 Score: 229 bits (584), Expect = 5.41e-72
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MGSFHVWKMMEEDYSWVKLEQKFAIMKSIKDHFSLMMVSYIRDYMIRCHFQLIKVFEDET 60
           MGSFHVWKMMEEDYSWVKLEQKFAIMKSIKDHFSLMMVSYIRDYMIRCHFQLIKVFEDET
Sbjct: 298 MGSFHVWKMMEEDYSWVKLEQKFAIMKSIKDHFSLMMVSYIRDYMIRCHFQLIKVFEDET 357

Query: 61  MLFLISQRALILYDSKIDQFEAVHDELNQDQDGKLCIHEIDSLNFDSLAKTLGVN 115
           MLFLISQRALILYDSKIDQFEAVHDELNQDQDGKLCIHEIDSLNFDSLAKTLGVN
Sbjct: 358 MLFLISQRALILYDSKIDQFEAVHDELNQDQDGKLCIHEIDSLNFDSLAKTLGVN 412

[Close]

BLAST of Cucsat.G12760 vs. ExPASy TrEMBL
Match: A0A0A0LCB8 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G836440 PE=4 SV=1)

HSP 1 Score: 138 bits (347), Expect = 1.45e-36
Identity = 78/128 (60.94%), Postives = 96/128 (75.00%), Query Frame = 0


Query: 1   MGSFHVWKMMEEDYSWVKLEQKFAIMKSIKDHFSLM-MVSYIR--------DYMIRC--- 60
           +G FHVWK+MEE YSW KLEQ+F I + I +H+S + ++ YIR        D+   C   
Sbjct: 300 IGRFHVWKLMEEGYSWFKLEQEFVIRQPISNHWSTVALLHYIRYLKYRGYYDFSSSCTRY 359

Query: 61  HFQLIKVFEDETMLFLISQRALILYDSKIDQFEAVHDELNQDQDGKLCIHEID-SLNFDS 115
           HFQLIKVFEDE MLFLIS++ALILYDSK +QFE  +++LNQDQDGKL I++ID SLN DS
Sbjct: 360 HFQLIKVFEDEKMLFLISRKALILYDSKTEQFEVTYNDLNQDQDGKLWIYDIDYSLNVDS 419

[Close]

BLAST of Cucsat.G12760 vs. ExPASy TrEMBL
Match: A0A5D3CIX9 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003440 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.85e-05
Identity = 40/110 (36.36%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 3   SFHVWKMMEEDYSWVKLEQKFAIMKSIKDHFSLMMVSYIRDYMIRCHFQLIKVFEDETML 62
            +HVWKM +ED+SW K E   A+ ++I       + S  R + I  + QL+K  ED ++L
Sbjct: 280 DYHVWKM-KEDFSWSK-EFVLALPENI-------LHSLHRHHPIGYYLQLVKFCEDGSIL 339

Query: 63  FLISQRALILYDSKIDQFEAVHDELNQDQDGKLCIHEIDSLNFDSLAKTL 112
            L +   LI+YD K  Q E + D+  + ++G +  H+I+S +F+SL  TL
Sbjct: 340 CLCAGILLIVYDPKTQQMEILTDQDFEIKEG-MWFHQIESFSFNSLHNTL 379

[Close]

BLAST of Cucsat.G12760 vs. ExPASy TrEMBL
Match: A0A1S3BQV8 (putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103492215 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.85e-05
Identity = 40/110 (36.36%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 3   SFHVWKMMEEDYSWVKLEQKFAIMKSIKDHFSLMMVSYIRDYMIRCHFQLIKVFEDETML 62
            +HVWKM +ED+SW K E   A+ ++I       + S  R + I  + QL+K  ED ++L
Sbjct: 280 DYHVWKM-KEDFSWSK-EFVLALPENI-------LHSLHRHHPIGYYLQLVKFCEDGSIL 339

Query: 63  FLISQRALILYDSKIDQFEAVHDELNQDQDGKLCIHEIDSLNFDSLAKTL 112
            L +   LI+YD K  Q E + D+  + ++G +  H+I+S +F+SL  TL
Sbjct: 340 CLCAGILLIVYDPKTQQMEILTDQDFEIKEG-MWFHQIESFSFNSLHNTL 379

[Close]

BLAST of Cucsat.G12760 vs. ExPASy TrEMBL
Match: A0A6J1CQE2 (F-box/kelch-repeat protein At3g06240-like OS=Momordica charantia OX=3673 GN=LOC111013202 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.52e-05
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 0


Query: 3   SFHVWKMMEEDYSWVKLEQKFAIMKSIKDHFSLMMVSYIRDYMIRCHFQLIKVFEDETML 62
           ++HVWKM EED+SW K      ++  I  H   +  S +         QLI+  +D  +L
Sbjct: 280 AYHVWKM-EEDFSWTKAFD--VLLPKIYVHHRRLYDSQL---------QLIRACDDGKIL 339

Query: 63  FLISQRALILYDSKIDQFEAV-HDELNQDQDGKLCIHEIDSLNFDSLAKTL 112
            LIS   LILY+SK  + E++ +  LN  +     +H IDS NFDSL K L
Sbjct: 340 CLISGLDLILYNSKTQRMESLTYQHLNIKK-----VHRIDSFNFDSLHKIL 373

The following BLAST results are available for this feature:

BLAST of Cucsat.G12760 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G12760 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59658.1	1.12e-71	100.00	hypothetical protein Csa_001357 [Cucumis sativus]	[more]
XP_011652871.1	3.01e-37	60.94	F-box/kelch-repeat protein At3g06240 [Cucumis sativus]	[more]
KGN59660.1	2.99e-36	60.94	hypothetical protein Csa_001105 [Cucumis sativus]	[more]
XP_008450717.1	3.83e-05	36.36	PREDICTED: putative F-box protein At3g21120 [Cucumis melo] >TYK10199.1 putative ...	[more]
XP_022143297.1	5.21e-05	37.84	F-box/kelch-repeat protein At3g06240-like [Momordica charantia]	[more]

BLAST of Cucsat.G12760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCZ3	5.41e-72	100.00	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G836430 PE=4 ...	[more]
A0A0A0LCB8	1.45e-36	60.94	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G836440 PE=4 ...	[more]
A0A5D3CIX9	1.85e-05	36.36	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A1S3BQV8	1.85e-05	36.36	putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103492215 PE=4 SV...	[more]
A0A6J1CQE2	2.52e-05	37.84	F-box/kelch-repeat protein At3g06240-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G12760.T1	Cucsat.G12760.T1	mRNA