Cucsat.G12750 (gene) Cucumber (B10) v3

Overview
NameCucsat.G12750
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionRNase H domain-containing protein
Locationctg1838: 3550658 .. 3555987 (-)
RNA-Seq ExpressionCucsat.G12750
SyntenyCucsat.G12750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAAAATTAAAGTATAATAATAATGAATATATTCAGAAATCCTCTTTCGCGGGTCAGCACACAATTTCTCCGCTATTACCGCTCATTCCACTTCTTCACACTACGCTAACTTTTTCCTTTCTCTCTATTATTCGCTTGGGTTCTATCATCTTCTACTTCTACGCCACGATCAGATTGACTTCTTTTCTTCTTCTTTCTCTTTTCTGACATTTGAATGTGGGTATTACTTATTGAAGATGGAGGGAGATAAAGATGCATATTACGTTGTACACAAAGGGGATGTTTTTGGATTTTATAGGACTGCTAAGGAGTTGCTGACTCATCCTGGACGTTTTGTAAGTGCTCAAAGTTTTTGTTTTCCTTTTACTTGTGTTTATGTACGTGTGCTGTATATTTGTATCATCTGGGACTCGGAAGCTACCCATCAGGAGCATGATTTTGGGGTTTATCCCTTTTGGTAAGCTACCCAGTTGGTTGCTTTGGAATCTTTGGTTTTAAAGAGCTTATGGTGAGATTCAAGTTTAACGTACGTTTATTTTTTTTTAAAATTAAATATTTTTAAATGTTAACACATTTTAAAACTGGGTTTGGTTACATTTTCCTTAAATGTTGATTTTAATAGCAAGCATCTGGAAGTGATTCCACACATGTCAAGTTACCCTCAAGTGAATCTAGAGTGATTTCCATTTTCCACTTTCCAATCAGTCATATTAGAGTGATTCTTGGAAGACAATTCTTTACAAATTTGATTATTTCAGGAGTGGTTTTTATTTGGTACCAAAACTCAGATAAAAAAATTAGCCCTTCAAATTCATCAAGGAAGCTGGCTTAAGCACACATTAAGTGAACTATAGAACGTTTGTCCTTCTCTTCCTGCAGGTATTTTGTGATTTTTCTTATCTGTTGGTGTTGCTACTGGTTATGGACATTGTCACTGTCCACATTGACATCCTATGTAATTTTAGTTGAGAGTCTGTTGGGCTAAGAATACAAGGGTTCGCATTTCAGATTTTGGTGTGATATATTATGTGAGGCTAGTGGCTTTTTGGGTTAATTACAATCAATGAATACTAAAGTTAAACATCTCAGATTTATCATAGCACTACAACATGAGTAAAGGTCTTGGATGTCGAATCTAGGAACTCCTTTGTCGCCGGGTTATTTACCATGGCCCCAACCCCACTTTTCTTCCAACATCATGTTGTACTTGGACATAGTGCCCAAATTGGCAACGGATGGGATCTTGCTCCTCCTTCTAACGTAAAGCGGAAAAGAAAAATGTTATTAAACTTATTTACTTGCTTGGATATATGTGGTTGATGTCACTTCTTCTCCATCTTACTAGGATCCCGATGCAACGATCTACAAAGGGTATCACTTATCTAAAGAAGCAGAAGAATATCTTGTAGCGCACGGACTTCAGAGTGCCACCTACTCTATAAGTGCTGCCAATGTGACCAAGGATCTATTTGGAAAAATACTTCCTTGTTTCCCTTATGAGGTTTGAAACAATGCATTTTTTGTTCTAAAATGTAATTATTTCAACTATTCTAATTCTACTGTACTTTTATCTTAAAAGAAATATAATCCATTGCTTTTGTATCTGAAGGCATTAAACGTTTTGTTAAACGAGTTCGATACAGGAATCTTTCTTGGTTTATTTATGAAATTGACATGATTAATAAACTTGATTGGTGATGCTTCTTTTTGATTTCCAAACGTTGTTGAACAAATTGTATATTGTAATGACATAGAGGTCGGGTTGTAAAGTCTGCTAGTGATACTTTTGTTTGAAACATATTTATATTTTTCTCAGCAACCATCTGCTACTAGAGGAAAAATGGCTGAAGAATACTCCAAAGCTGAGAGACAAGAACGAGTCCTTGAGAATACTGAATATGTAAGTTTGTCTGTTTCACAGTAAAAATTATTCAGTTGAAATTTTCACGAGTCACTGTGGTAATCGATAGAAAGGTCAAAGGTGTCCCCAGGATTCATGTGGCTGTTGTTTGCTGTCTTCAGATTTGATTGGGAAAAGGGTACATTGTTTTTACTTCCTATACCCAAGTGCGCGTATTTTGTAGTTCTTACTTCTCTGTTTGCTTAATTTGTGTCTCGAACTGTAGATGGTGACTTCCACTTTCTCCCCCACTAATTTTTTTTTTTCAATTTGGAGTTTTTGTAATCTCATTTAGCCGTGGGATAACGATAACATAATTGACTCCTAATGAGCAACTCAAGAAGGACCAATGTAACTAAGGAATCCTAGTTAAAACAATGGATTTTGAATTCATGAGGCCCGAAATTTTTTTGTTTCTCACCAAGAGTTGCTGAAAAGGCTTTTGTCTTTACTAAGGAGTTTATAAGGCTTCATGGGTTCGAATTCCAGTGTATTGAACTGGGAACGTTTTCATGAGAACATTGTGGGGGAGATTTTCTCAAGATGCAACCCATACTGTTGGAGGTTAGTAAATAGTTACTTGGGAAACCTATTTTCACTTTTTCGTGTCTACTAAACCAAACAGTTAGGCTAGGTGGGTATAACTCCTCCTTCCATGCATTTACAAAAGAAGTCTTTTTTTCAAGTGTCGATGGGTGGATTCTCATCCTTGTAGGTCATTATGAACAGGTTTCCTAATTTTCTACTATTGCAAATTGAGATGATTTGAAGTCGCTATAAACACGGGCACAATTGACTATGCAAAACAATTCTGTCAAGCACCAACATACTGAAGTTTTTAGATGGTGACCATCTGAAGTGGTCGACTTTCCAGCAACTCTTGATAGTGTTATCAGAAGGAAGAATGGGAATCTGGCCCCAATATGAATTACCACCAAACTGAGTGTGGATGGATGTTCCATTTATCTCATCTCAGTTGTGTTTAGCCCTTGGCAGTAACCGGCAACTCATCCTCATCACCAAACCTTGTGTTCAGAAGTAGAAATCAATCTTCAACTTGTTATAATATCCTATAAACACATTATCTATTGACGATTTGAGGCTCCATTCGATGGAAGAGACAACAGGCTGAAAATGGTATCTGGGAATTTGGTTAGGGTGAAATAATTCTGAAGGAAAAAGACGTTTTTGATTTCTAGGTTTTGGTCCAGTTTCTATTTAGTCCTTAGATCCCAAAATGTTACACATTTAATCCTTAAGTTTTGATTTTGGTTTCAATTTAGTTTGTAAGTATCAAGATGTTACATTTTAAAGTCAAGATTTGAGTTTTGTCTCAATTTGGTTCCAATATTTTACATTTTAACTTCAATTTTTCATTAAATACTCACTTATAAACATTGATGTCAATGTTTATTAATTAATTTAAAGTAATTATGAAATAAAGTTTTAAATTTTAATTTTGGAACAAAATTCAAATGTCAATGGTAATATCTAACATTTTGAAACTTATGGACTAGATGAGAATCAAACTCAAAATTTAAAGACCAAATGTGTAACCTTTTGAATTCTAAGATCCAAAACTTAGAGACGTTTTCTAATTTTGAACTATGTTTCAACTTGAGGACATGGTGAGTGCTGAAAGGATCTTTTGTAGCTCTTTGTGGGAGGTTCAGACTAACTTTGGAGTTTGGCTCTTAGGTTGCTCTTTTATTCTTTTTTAGTAACGTATATCTCAAAGTTTCTTACTTTTAAATAGAAGTTTGGTACAAAAAAAAATGCCCTCATGAACGTACGACTATATTGTCACTCATTCCTTTTACCAATGCTCTGCAATTGTCCTGAGTTTTATCTTAATTTGCCAGTGGCTTTTAAATAATTAATTGAATATATCTGCTTCCAGACCTATTTTCTTGAGTTTGATGGTGCCTCAAAGGGAAATCCTGGGCTAGCAGGTGCTGGAGCTGTTTTACGTGCTAACGATGGATCTACGGTTGTTAAATTCAATTATTCTCTACATTCTCAAAGCCTTTACTTTTATTTATTTATTATTATATTTTTTTTTGGCTTAAAGCTTAAGTTTGCTCATTTGATAGGTCTGTAAGTTGCAAGAAGGGGTTGGGATTGCTACATGTAATGTTGCTGAATATCGTGCTGTAATTTTAGGACTGAAACATGCTCTAAAGAATGGCATTAAACACATTCGTGTCCAAGGAGACTCTAAGCTTGTTTGTATGCAGGTTTGTCAGCTTTATTAGCATTTTACATACAGACAGGTGTACCAGCTAACAAACTTTTCTCCACACAACTATATGTATGTTCCAAATGAACGCAATGTTGCAATGTTCAAGCTGACAGTTGCGAATATCTCCTGCTGTATACACATATAGATAGATAAGATCAAGGAAGCTGTTAAACATGACTTCTGTCAAATTTTACTTAAACTACGCACAATCACAAGTTTGATTTATATATACATGATTTCTGTCAAATTTTCTGCTTGCTTTCAATCTTTCTCGTGTTCAAGTCAGATGTAAAAGGGAACGTGGATTTTCTATGACAGGTTCAGGGTCTATGGAAGCTCAAAAACCCAAATATGGCTAAATTTTGTAAAGTGGCTAAGGAGCTCAAGGATAAGTTTGTGTCATTTGAGATCAGCCATTTCCCTAGGGTACATTTTTTTTTTCTTTTAGACTGAATATTCCTAGGAACATACAACAGCATATATTTATGTGTGTGTGTTTCCTGAAGATTTTGAAGTATTGTTTTTTCCCTTTTTGGTATTCAATTCTTTCACAAGTTTTTGCATTTGTCCAATCCACCTTAGCAGAGCGTGCACCTTTTTCTTTTTTTTTTTTTTTGTTTCTTGAACTTTTATTGAAAAAAATTAAATAGTAGACAAGTCATAAAGAAGAGAACACACCAGAAATGGACGTTGGAGGAGTAGACTCAAATCTCACAGGGCCATCTTCCTAATATGTTAAAATTTTACGAGTTTTGTGACTGATAAGAATGGTGGAATTGTGCATTAATCAATGTCGCACAGTTTATTGCATGCTTTTCAAAGTTTTTGGTATTCTTTTAGACATGGAAAATGAATAAGCCTTCTTTGATGCCTTTAATATTTCGATATTGTTTCGATTCTCTTCAAGAGTAAGCTATTCAATAATGTGATCATCTTATTCTCTCTCATTTTGTCATTTCATTCTTACTAATACATAACTCCTTAGCCTACCCTTTTACTGGTTCTGCAATTGTAAATGACATATATTTCCATTTCAAGAAACAAAATTCTGATGCCGATGCTCTAGCGAACTGCGCTATACGTCTACAAGGTGAGTTAGACCTTTCCCAAAGTTAAACCACTACATCATCCTCCGTTTTGCATTTGTTTGGCCTTTTTTCACTGAAGCTTGATTAAATTTTGCAGATGGAGTCGTAGTAGAAGACTGCATGCATAAATGAACTTCAAACACTTTCAAATGGTAGGCAAGGATATCCTCTGCATTAAGCTGCATAGCTATAGCTGTCCAGATTGACACCCTATTTTGTACCATTTGAATGTTAAAAGATACTTTGATTAACATCCTTATTTTGGTTACTATGTTAACTAATGCAACTTTAGAGCTGTAAATATAGAAAACTTGGATATTGGCATGTCAAGAGTAATTAGTCTTACTCTAGCGTGACGGTTTCTCGCCCCAGATAGATTCTATGATCTCGAGCCTTGAAAATCTATTTTCTCAGGTCCAATTCCAATTCCGAGTACTTGTGACTGGTAATCCTTGCTCTGGGTTCAAGCTCCCTAAAATTTCCTCTTAAAATGGTGAAATTGAAAATTTTTGTTTTGCTGTAAAAGGTTGATGTAAATTTACTGTTTTTTACTCATTATTTTGTTATAAAATCTAATCTCTCAATGTATATACCCATTGGAATTACTCTCAAAATGGAACACAATGATACCCTAAACCCTTATATTTATGATTTATTTTTTCCATTA

Coding sequence (CDS)

ATGGAGGGAGATAAAGATGCATATTACGTTGTACACAAAGGGGATGTTTTTGGATTTTATAGGACTGCTAAGGAGTTGCTGACTCATCCTGGACGTTTTGATCCCGATGCAACGATCTACAAAGGGTATCACTTATCTAAAGAAGCAGAAGAATATCTTGTAGCGCACGGACTTCAGAGTGCCACCTACTCTATAAGTGCTGCCAATGTGACCAAGGATCTATTTGGAAAAATACTTCCTTGTTTCCCTTATGAGCAACCATCTGCTACTAGAGGAAAAATGGCTGAAGAATACTCCAAAGCTGAGAGACAAGAACGAGTCCTTGAGAATACTGAATATGTAAGTTTGTCTGTTTCACAGTAA

Protein sequence

MEGDKDAYYVVHKGDVFGFYRTAKELLTHPGRFDPDATIYKGYHLSKEAEEYLVAHGLQSATYSISAANVTKDLFGKILPCFPYEQPSATRGKMAEEYSKAERQERVLENTEYVSLSVSQ
Homology
[Close]
BLAST of Cucsat.G12750 vs. ExPASy Swiss-Prot
Match: P9WLH5 (Bifunctional protein Rv2228c OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=Rv2228c PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-10
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 0 

Query: 24  LEFDGASKGNPGLAGAGAVLRANDGSTV-CKLQEGVGIATCNVAEYRAVILGLKHALKNG 83
           +E DG S+GNPG AG GAV+   D STV  + ++ +G AT NVAEYR +I GL  A+K G
Sbjct: 5   IEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLG 64

Query: 84  IKHIRVQGDSKLVCMQV 100
                V  DSKLV  Q+
Sbjct: 65  ATEAAVLMDSKLVVEQM 81

[Close]
BLAST of Cucsat.G12750 vs. ExPASy Swiss-Prot
Match: P9WLH4 (Uncharacterized protein MT2287 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT2287 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-10
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 0 

Query: 24  LEFDGASKGNPGLAGAGAVLRANDGSTV-CKLQEGVGIATCNVAEYRAVILGLKHALKNG 83
           +E DG S+GNPG AG GAV+   D STV  + ++ +G AT NVAEYR +I GL  A+K G
Sbjct: 5   IEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLG 64

Query: 84  IKHIRVQGDSKLVCMQV 100
                V  DSKLV  Q+
Sbjct: 65  ATEAAVLMDSKLVVEQM 81

[Close]
BLAST of Cucsat.G12750 vs. ExPASy Swiss-Prot
Match: P64956 (Uncharacterized protein Mb2253c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=BQ2027_MB2253C PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-10
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 0 

Query: 24  LEFDGASKGNPGLAGAGAVLRANDGSTV-CKLQEGVGIATCNVAEYRAVILGLKHALKNG 83
           +E DG S+GNPG AG GAV+   D STV  + ++ +G AT NVAEYR +I GL  A+K G
Sbjct: 5   IEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLG 64

Query: 84  IKHIRVQGDSKLVCMQV 100
                V  DSKLV  Q+
Sbjct: 65  ATEAAVLMDSKLVVEQM 81

[Close]
BLAST of Cucsat.G12750 vs. ExPASy Swiss-Prot
Match: Q9HSF6 (Ribonuclease HI OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) OX=64091 GN=rnhA PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.5e-09
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 26  FDGASKGNPGLAGAGAVLRANDGSTVCKLQEGVGIATCNVAEYRAVILGLKHALKNGIKH 85
           FDGAS+GNPG A  G VL + DG  V +  + +G AT N AEY A+I  L+ A   G   
Sbjct: 74  FDGASRGNPGPAAVGWVLVSGDGGIVAEGGDTIGRATNNQAEYDALIAALEAAADFGFDD 133

Query: 86  IRVQGDSKLVCMQV 100
           I ++GDS+LV  Q+
Sbjct: 134 IELRGDSQLVEKQL 147

[Close]
BLAST of Cucsat.G12750 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.4e-04
Identity = 25/69 (36.23%), Postives = 37/69 (53.62%), Query Frame = 0 

Query: 27  DGASKGNPGLAGAGAVLRANDGSTVCKLQEGVGIATCNVAEYRAVILGLKHALKNGIKHI 86
           DGAS+GNPGLA AG VLR   G+        +G  +   AE   V  GL  A +  +  +
Sbjct: 465 DGASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRV 524

Query: 87  RVQGDSKLV 96
            ++ DS+++
Sbjct: 525 ELEVDSEVI 533

[Close]
BLAST of Cucsat.G12750 vs. NCBI nr
Match: XP_004147444.1 (uncharacterized protein LOC101219107 [Cucumis sativus] >KGN59631.1 hypothetical protein Csa_002359 [Cucumis sativus])

HSP 1 Score: 198 bits (504), Expect = 9.28e-62
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 1   MAEEYSKAERQERVLENTEYTYFLEFDGASKGNPGLAGAGAVLRANDGSTVCKLQEGVGI 60
           MAEEYSKAERQERVLENTEYTYFLEFDGASKGNPGLAGAGAVLRANDGSTVCKLQEGVGI
Sbjct: 94  MAEEYSKAERQERVLENTEYTYFLEFDGASKGNPGLAGAGAVLRANDGSTVCKLQEGVGI 153

Query: 61  ATCNVAEYRAVILGLKHALKNGIKHIRVQGDSKLVCMQVCQLY 103
           ATCNVAEYRAVILGLKHALKNGIKHIRVQGDSKLVCMQV  L+
Sbjct: 154 ATCNVAEYRAVILGLKHALKNGIKHIRVQGDSKLVCMQVQGLW 196

[Close]
BLAST of Cucsat.G12750 vs. NCBI nr
Match: XP_008443478.1 (PREDICTED: uncharacterized protein Mb2253c isoform X2 [Cucumis melo])

HSP 1 Score: 190 bits (483), Expect = 5.36e-59
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MAEEYSKAERQERVLENTEYTYFLEFDGASKGNPGLAGAGAVLRANDGSTVCKLQEGVGI 60
           MAEEY KAERQERVL+NTEYTYFLEFDGASKGNPGLAGAGA+LRANDGSTVC+LQEGVGI
Sbjct: 62  MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGSTVCRLQEGVGI 121

Query: 61  ATCNVAEYRAVILGLKHALKNGIKHIRVQGDSKLVCMQVCQLY 103
           ATCNVAEYRA+ILGLKHALKNGIKHI VQGDSKLVCMQV  L+
Sbjct: 122 ATCNVAEYRAIILGLKHALKNGIKHIYVQGDSKLVCMQVQGLW 164

[Close]
BLAST of Cucsat.G12750 vs. NCBI nr
Match: XP_008443477.1 (PREDICTED: uncharacterized protein LOC103487060 isoform X1 [Cucumis melo])

HSP 1 Score: 190 bits (483), Expect = 1.42e-58
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MAEEYSKAERQERVLENTEYTYFLEFDGASKGNPGLAGAGAVLRANDGSTVCKLQEGVGI 60
           MAEEY KAERQERVL+NTEYTYFLEFDGASKGNPGLAGAGA+LRANDGSTVC+LQEGVGI
Sbjct: 94  MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGSTVCRLQEGVGI 153

Query: 61  ATCNVAEYRAVILGLKHALKNGIKHIRVQGDSKLVCMQVCQLY 103
           ATCNVAEYRA+ILGLKHALKNGIKHI VQGDSKLVCMQV  L+
Sbjct: 154 ATCNVAEYRAIILGLKHALKNGIKHIYVQGDSKLVCMQVQGLW 196

[Close]
BLAST of Cucsat.G12750 vs. NCBI nr
Match: TYK17758.1 (RNase H domain-containing family protein [Cucumis melo var. makuwa])

HSP 1 Score: 190 bits (483), Expect = 2.35e-58
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MAEEYSKAERQERVLENTEYTYFLEFDGASKGNPGLAGAGAVLRANDGSTVCKLQEGVGI 60
           MAEEY KAERQERVL+NTEYTYFLEFDGASKGNPGLAGAGA+LRANDGSTVC+LQEGVGI
Sbjct: 111 MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGSTVCRLQEGVGI 170

Query: 61  ATCNVAEYRAVILGLKHALKNGIKHIRVQGDSKLVCMQVCQLY 103
           ATCNVAEYRA+ILGLKHALKNGIKHI VQGDSKLVCMQV  L+
Sbjct: 171 ATCNVAEYRAIILGLKHALKNGIKHIYVQGDSKLVCMQVQGLW 213

[Close]
BLAST of Cucsat.G12750 vs. NCBI nr
Match: KAA0053700.1 (RNase H domain-containing family protein [Cucumis melo var. makuwa])

HSP 1 Score: 186 bits (471), Expect = 1.58e-56
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 0 

Query: 1   MAEEYSKAERQERVLENTEYTYFLEFDGASKGNPGLAGAGAVLRANDGSTV-CKLQEGVG 60
           MAEEY KAERQERVL+NTEYTYFLEFDGASKGNPGLAGAGA+LRANDGSTV C+LQEGVG
Sbjct: 111 MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGSTVVCRLQEGVG 170

Query: 61  IATCNVAEYRAVILGLKHALKNGIKHIRVQGDSKLVCMQVCQLY 103
           IATCNVAEYRA+ILGLKHALKNGIKHI VQGDSKLVCMQV  L+
Sbjct: 171 IATCNVAEYRAIILGLKHALKNGIKHIYVQGDSKLVCMQVQGLW 214

[Close]
BLAST of Cucsat.G12750 vs. ExPASy TrEMBL
Match: A0A0A0LHV8 (RNase H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G829210 PE=4 SV=1)

HSP 1 Score: 198 bits (504), Expect = 4.49e-62
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 1   MAEEYSKAERQERVLENTEYTYFLEFDGASKGNPGLAGAGAVLRANDGSTVCKLQEGVGI 60
           MAEEYSKAERQERVLENTEYTYFLEFDGASKGNPGLAGAGAVLRANDGSTVCKLQEGVGI
Sbjct: 94  MAEEYSKAERQERVLENTEYTYFLEFDGASKGNPGLAGAGAVLRANDGSTVCKLQEGVGI 153

Query: 61  ATCNVAEYRAVILGLKHALKNGIKHIRVQGDSKLVCMQVCQLY 103
           ATCNVAEYRAVILGLKHALKNGIKHIRVQGDSKLVCMQV  L+
Sbjct: 154 ATCNVAEYRAVILGLKHALKNGIKHIRVQGDSKLVCMQVQGLW 196

[Close]
BLAST of Cucsat.G12750 vs. ExPASy TrEMBL
Match: A0A1S3B845 (uncharacterized protein Mb2253c isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487060 PE=4 SV=1)

HSP 1 Score: 190 bits (483), Expect = 2.60e-59
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MAEEYSKAERQERVLENTEYTYFLEFDGASKGNPGLAGAGAVLRANDGSTVCKLQEGVGI 60
           MAEEY KAERQERVL+NTEYTYFLEFDGASKGNPGLAGAGA+LRANDGSTVC+LQEGVGI
Sbjct: 62  MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGSTVCRLQEGVGI 121

Query: 61  ATCNVAEYRAVILGLKHALKNGIKHIRVQGDSKLVCMQVCQLY 103
           ATCNVAEYRA+ILGLKHALKNGIKHI VQGDSKLVCMQV  L+
Sbjct: 122 ATCNVAEYRAIILGLKHALKNGIKHIYVQGDSKLVCMQVQGLW 164

[Close]
BLAST of Cucsat.G12750 vs. ExPASy TrEMBL
Match: A0A1S3B7N6 (uncharacterized protein LOC103487060 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487060 PE=4 SV=1)

HSP 1 Score: 190 bits (483), Expect = 6.87e-59
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MAEEYSKAERQERVLENTEYTYFLEFDGASKGNPGLAGAGAVLRANDGSTVCKLQEGVGI 60
           MAEEY KAERQERVL+NTEYTYFLEFDGASKGNPGLAGAGA+LRANDGSTVC+LQEGVGI
Sbjct: 94  MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGSTVCRLQEGVGI 153

Query: 61  ATCNVAEYRAVILGLKHALKNGIKHIRVQGDSKLVCMQVCQLY 103
           ATCNVAEYRA+ILGLKHALKNGIKHI VQGDSKLVCMQV  L+
Sbjct: 154 ATCNVAEYRAIILGLKHALKNGIKHIYVQGDSKLVCMQVQGLW 196

[Close]
BLAST of Cucsat.G12750 vs. ExPASy TrEMBL
Match: A0A5D3D2K9 (RNase H domain-containing family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1804G00310 PE=4 SV=1)

HSP 1 Score: 190 bits (483), Expect = 1.14e-58
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MAEEYSKAERQERVLENTEYTYFLEFDGASKGNPGLAGAGAVLRANDGSTVCKLQEGVGI 60
           MAEEY KAERQERVL+NTEYTYFLEFDGASKGNPGLAGAGA+LRANDGSTVC+LQEGVGI
Sbjct: 111 MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGSTVCRLQEGVGI 170

Query: 61  ATCNVAEYRAVILGLKHALKNGIKHIRVQGDSKLVCMQVCQLY 103
           ATCNVAEYRA+ILGLKHALKNGIKHI VQGDSKLVCMQV  L+
Sbjct: 171 ATCNVAEYRAIILGLKHALKNGIKHIYVQGDSKLVCMQVQGLW 213

[Close]
BLAST of Cucsat.G12750 vs. ExPASy TrEMBL
Match: A0A5A7UES0 (RNase H domain-containing family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G00740 PE=4 SV=1)

HSP 1 Score: 186 bits (471), Expect = 7.67e-57
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 0 

Query: 1   MAEEYSKAERQERVLENTEYTYFLEFDGASKGNPGLAGAGAVLRANDGSTV-CKLQEGVG 60
           MAEEY KAERQERVL+NTEYTYFLEFDGASKGNPGLAGAGA+LRANDGSTV C+LQEGVG
Sbjct: 111 MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGSTVVCRLQEGVG 170

Query: 61  IATCNVAEYRAVILGLKHALKNGIKHIRVQGDSKLVCMQVCQLY 103
           IATCNVAEYRA+ILGLKHALKNGIKHI VQGDSKLVCMQV  L+
Sbjct: 171 IATCNVAEYRAIILGLKHALKNGIKHIYVQGDSKLVCMQVQGLW 214

The following BLAST results are available for this feature:
BLAST of Cucsat.G12750 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P9WLH53.1e-1050.65Bifunctional protein Rv2228c OS=Mycobacterium tuberculosis (strain ATCC 25618 / ... [more]
P9WLH43.1e-1050.65Uncharacterized protein MT2287 OS=Mycobacterium tuberculosis (strain CDC 1551 / ... [more]
P649563.1e-1050.65Uncharacterized protein Mb2253c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF... [more]
Q9HSF64.5e-0947.30Ribonuclease HI OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC... [more]
P0C2F64.4e-0436.23Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
BLAST of Cucsat.G12750 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147444.19.28e-6297.09uncharacterized protein LOC101219107 [Cucumis sativus] >KGN59631.1 hypothetical ... [more]
XP_008443478.15.36e-5991.26PREDICTED: uncharacterized protein Mb2253c isoform X2 [Cucumis melo][more]
XP_008443477.11.42e-5891.26PREDICTED: uncharacterized protein LOC103487060 isoform X1 [Cucumis melo][more]
TYK17758.12.35e-5891.26RNase H domain-containing family protein [Cucumis melo var. makuwa][more]
KAA0053700.11.58e-5690.38RNase H domain-containing family protein [Cucumis melo var. makuwa][more]
BLAST of Cucsat.G12750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHV84.49e-6297.09RNase H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G829210 PE=... [more]
A0A1S3B8452.60e-5991.26uncharacterized protein Mb2253c isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034870... [more]
A0A1S3B7N66.87e-5991.26uncharacterized protein LOC103487060 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5D3D2K91.14e-5891.26RNase H domain-containing family protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7UES07.67e-5790.38RNase H domain-containing family protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G12750.T2Cucsat.G12750.T2mRNA
Cucsat.G12750.T38Cucsat.G12750.T38mRNA
Cucsat.G12750.T7Cucsat.G12750.T7mRNA
Cucsat.G12750.T9Cucsat.G12750.T9mRNA
Cucsat.G12750.T32Cucsat.G12750.T32mRNA
Cucsat.G12750.T6Cucsat.G12750.T6mRNA
Cucsat.G12750.T5Cucsat.G12750.T5mRNA
Cucsat.G12750.T4Cucsat.G12750.T4mRNA
Cucsat.G12750.T3Cucsat.G12750.T3mRNA
Cucsat.G12750.T1Cucsat.G12750.T1mRNA
Cucsat.G12750.T8Cucsat.G12750.T8mRNA
Cucsat.G12750.T26Cucsat.G12750.T26mRNA
Cucsat.G12750.T27Cucsat.G12750.T27mRNA
Cucsat.G12750.T25Cucsat.G12750.T25mRNA
Cucsat.G12750.T22Cucsat.G12750.T22mRNA
Cucsat.G12750.T20Cucsat.G12750.T20mRNA
Cucsat.G12750.T44Cucsat.G12750.T44mRNA
Cucsat.G12750.T47Cucsat.G12750.T47mRNA
Cucsat.G12750.T40Cucsat.G12750.T40mRNA
Cucsat.G12750.T41Cucsat.G12750.T41mRNA
Cucsat.G12750.T42Cucsat.G12750.T42mRNA
Cucsat.G12750.T33Cucsat.G12750.T33mRNA
Cucsat.G12750.T34Cucsat.G12750.T34mRNA
Cucsat.G12750.T19Cucsat.G12750.T19mRNA
Cucsat.G12750.T17Cucsat.G12750.T17mRNA
Cucsat.G12750.T15Cucsat.G12750.T15mRNA
Cucsat.G12750.T14Cucsat.G12750.T14mRNA
Cucsat.G12750.T13Cucsat.G12750.T13mRNA
Cucsat.G12750.T12Cucsat.G12750.T12mRNA
Cucsat.G12750.T11Cucsat.G12750.T11mRNA
Cucsat.G12750.T10Cucsat.G12750.T10mRNA
Cucsat.G12750.T37Cucsat.G12750.T37mRNA
Cucsat.G12750.T31Cucsat.G12750.T31mRNA
Cucsat.G12750.T43Cucsat.G12750.T43mRNA
Cucsat.G12750.T35Cucsat.G12750.T35mRNA
Cucsat.G12750.T36Cucsat.G12750.T36mRNA
Cucsat.G12750.T45Cucsat.G12750.T45mRNA
Cucsat.G12750.T29Cucsat.G12750.T29mRNA
Cucsat.G12750.T46Cucsat.G12750.T46mRNA
Cucsat.G12750.T48Cucsat.G12750.T48mRNA
Cucsat.G12750.T39Cucsat.G12750.T39mRNA
Cucsat.G12750.T49Cucsat.G12750.T49mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity