Cucsat.G12708 (gene) Cucumber (B10) v3

Overview
NameCucsat.G12708
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionGag-pol polyprotein
Locationctg1838: 2817059 .. 2819826 (-)
RNA-Seq ExpressionCucsat.G12708
SyntenyCucsat.G12708
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAATTTCTACCACTTTTAAGTTTCATTAAGTTGGAATTTGATTTTGATATTTAAATCAAATTAAGTTCTGTTTTAGTTTTATCTCAATTTTTTTCTTCGTAAAAGACTTGAATTCTTCACCATACTTTTTTTAAGCAAAGGACTCAAGTAGAAGTCAAATGGTTATCAACGGTTCTGAGATAAGATGTAAGTTTCTTGCTATTTCTATACGGTCAATTAAAATGAAGCCTGGTTTGTCAATTTGGTATCATCTTCGATGACACTTAGGCTATGAAAAGCTGTTTTGATTCAAGAAATGAAAAGAGGAAGTTCTTGTACTATGTAAGATTTGTAGTTCTGGGAAAATAAAAAATGTTTGTTTGAATTTTAACATAATATATAGTTGGTAACTACATTACAATGATATCTTTATAAAAATGTATTACCCAACATACATCTTTGAAATTTCATTACTAAATTTGATGCAAAATGCAAAATACTAACTCTAGTCTTGATGGATCCATTGTCTCACTCCACTCTAACTTATACACAGTCTTGCATTATTCAAAAACCATTCTGCCACGAACAAATGAGCAATCTCACATGTTCAAGCTTCGAAGTGTACACCACTCAACGTTCCCCAGCTGCTCAAACCTCCATTTTGCTAAGAACTTGATCGATGTGAAATCAATACTGCCACAAAAGAAACATTTTCATTGATTGGAAAAGGCTGAGAAAAGGCAACTTCAAACACTACAAAAGAATCTTTACTTTGCTCACAATTACATCAACTATCAAACTATTTAGGTACTTCTAAGTTCCCACATTATGAACAGACATATCAGGAATTTTGAATGCTAAATCTCCACCCACACGCTGAGAGGATATACTTGAAAAGGTAAAACAAAGAGCAGACAATAGAGTAAATGAGGAAAGGTGAAAAACAAAAAGATGGCTAAAATATTGAGAAAGGAAAGGAAGTGTGGCCGAGAATTAGTGAAGAAATGAGGAAAAGGTGAAATGTGAGTAAGTTAAATACCCTTTAGCTACCACGTTTTCCTATTATGAGTTTGTTTCCTTCTTATGTGGAAGAAGGTATCTCCATAAAATATTTTGGGAACATATATATATACCAAGATCGGTGGTTGTTACGGAAGTACGAAGAAATCCGATTCTCGAAAGAATTATACGAACTCGTCTGATCAAGTTGTTCAAGGTGAATGTTTAATGAATATATCATATTGATCTTGACATTGTAGACTGTGTTGTTGATATGTGAATTATGAGAAGATAAGAAATATATTTATATGAAGACCATTGAATTGAGGGATCAATTCACGAAGTCAAGGGGAGTCTGGACTAGTTTTAGAAGAGATTTTTTGTACCTTCAGAGGGAGCCTGAGTTTACTATTAGTTTTCATTATGACTATCTAATGTAACTAGTGAGATAAGTTACATATGATGAATCTCAATAATATTTCTTATCTGAGCAAAGAAACTCTCCAGATGTAGGCCGTATTTGCCGAACTGGGTAACCAAAGTGCACTGTGTTACTTATTTTCAGTGTGTTTTAGTTATTCGTATAGTTAGATACTTGTGATATAGCTAAAGAGTATTTAACTTACTCACTTTTCAATTGGTATCATAACGGGTTCGATATAAAAGGAAACGCTAGGAGAAGTTGTTGTCGCTACAAGACCACCCATATTGGATGGAAAAAACTATTCTTATTGGAAGACTCGCATGACGTCATACCTAAAGTCTCTGGATGCAAAGGCCTGGAAAGCAGTTAAAATTGGATGGAAACCACCTACGGTTACTGTTGATGGTAAGCCTGTGCCAAAACCAGAGGAAGCCTGGACTGATGCAGAGGAGCAGGAATCCTTGAGAAATTCTCGAGCTCTCAATGCCATACATAATGGAGTCGACCTGAACATGTTCAAATTAATCAACTCCCGTGTTACAGCAAAAGACGCATGGAAAAGCCTTGAAGTAGCATTTGAGGGAACATCTAAAGTAAAGACCTCTCGTCTACTGCTGTTGACTACTAAGTTTGAATCACTAAGAATAATGGAAGAAGAAACCATAACTGAGTACAATGTACGGGTTCTGGAAATTGCCAATGATTCTTTGATCTTGGTGAAGGAATTCCAGAAGCAAAGCTAGTCAGGAAAGTCTTACAATCTCTCTCCAGAAGATTAGAAGCACATGATGTCATACTCTCTCTAGATGAATTGTTTGGTTCCTTACTCACATTTGAAATCTCCTTAGCAGATAGAGTAGAAAGTAAATGTAAAGGTGTTTCGTTCCAATCAATTCATGAAGATGAATCCCTTGAGAAAGGAAAAGCACTCTATGGTCAAGTAAATGAGTCCATTGCCATGCTAACAAACCAGTTTTCCAACGTGATCAAGAAAATCAGCAGTTCCAACAATTATGGATCGAATAATCGATTTCAAAACAATTTTAGAAGAAGAGAGTTCCAACAATTTAGTCTCTGACATTTGGTCTATTAAACTCTCTTCTTTTGATTTCAAAATAATGTTTTGGAAAAATAACACTAGAAAAAAAGAATAATTGTGTTGTTTCCAAACTTTTAATTAGAAATGCTTATGAAGAATAAAAAATATATAAGAAATAAGAATAGTTCATTGCCAAAAAATTTATTTCTAAAAATTGAAAACTAAGCAAATAAATTTAAGGGTTACTTTTGAAACTTCGTAGACGAATATAGACACAATCACCCAACCCAAAATCCATAAACCAAATAAACACCAACTCCAAATTAT

Coding sequence (CDS)

ATGACGTCATACCTAAAGTCTCTGGATGCAAAGGCCTGGAAAGCAGTTAAAATTGGATGGAAACCACCTACGGTTACTGTTGATGGTAAGCCTGTGCCAAAACCAGAGGAAGCCTGGACTGATGCAGAGGAGCAGGAATCCTTGAGAAATTCTCGAGCTCTCAATGCCATACATAATGGAGTCGACCTGAACATGTTCAAATTAATCAACTCCCGTGTTACAGCAAAAGACGCATGGAAAAGCCTTGAAGTAGCATTTGAGGGAACATCTAAAGTAAAGACCTCTCGTCTACTGCTGTTGACTACTAAGTTTGAATCACTAAGAATAATGGAAGAAGAAACCATAACTGAGTACAATGTACGGGTTCTGGAAATTGCCAATGATTCTTTGATCTTGGTGAAGGAATTCCAGAAGCAAAGCTAG

Protein sequence

MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLLTTKFESLRIMEEETITEYNVRVLEIANDSLILVKEFQKQS
Homology
BLAST of Cucsat.G12708 vs. NCBI nr
Match: KAA0038891.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (441), Expect = 1.91e-52
Identity = 88/138 (63.77%), Postives = 112/138 (81.16%), Query Frame = 0

Query: 1   MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNG 60
           M  ++K+LD KAW+A+  G++PP VTV+G  V KPE  WTDAEEQ S+ N+RA+NAI NG
Sbjct: 1   MIFFIKTLDGKAWRALVGGYEPPMVTVNGVSVSKPEIDWTDAEEQASVGNARAINAIFNG 60

Query: 61  VDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLLTTKFESLRIMEEETITEYNV 120
           VDLN+FKLINS  TAK AWK LEVA+EGTSKVK SRL L+T+KFE+L++ E+ET++ YN 
Sbjct: 61  VDLNVFKLINSCTTAKKAWKILEVAYEGTSKVKISRLQLITSKFEALKMTEDETVSIYNE 120

Query: 121 RVLEIANDSLILVKEFQK 138
           RVLEIANDSL+L ++  K
Sbjct: 121 RVLEIANDSLLLGEKISK 138

BLAST of Cucsat.G12708 vs. NCBI nr
Match: TYJ96033.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 173 bits (439), Expect = 3.85e-52
Identity = 88/138 (63.77%), Postives = 112/138 (81.16%), Query Frame = 0

Query: 1   MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNG 60
           M  ++K+LD KAW+A+  G++PP VTV+G  V KPE  WTDAEEQ S+ N+RA+NAI NG
Sbjct: 1   MIFFIKTLDGKAWRALVGGYEPPMVTVNGVSVLKPEIDWTDAEEQASVGNARAINAIFNG 60

Query: 61  VDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLLTTKFESLRIMEEETITEYNV 120
           VDLN+FKLINS  TAK AWK LEVA+EGTSKVK SRL L+T+KFE+L++ E+ET++ YN 
Sbjct: 61  VDLNVFKLINSCTTAKKAWKILEVAYEGTSKVKISRLQLITSKFEALKMTEDETVSIYNE 120

Query: 121 RVLEIANDSLILVKEFQK 138
           RVLEIANDSL+L ++  K
Sbjct: 121 RVLEIANDSLLLGEKISK 138

BLAST of Cucsat.G12708 vs. NCBI nr
Match: KAA0053604.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (434), Expect = 3.96e-51
Identity = 83/132 (62.88%), Postives = 109/132 (82.58%), Query Frame = 0

Query: 1   MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNG 60
           M  ++K+LD KAW+A+  G+ PP +TV+G  VPKPE  WT+AEEQ S+ N+RALNAI NG
Sbjct: 28  MIFFIKTLDGKAWRALMAGYNPPMITVNGVSVPKPEVDWTNAEEQASVGNARALNAIFNG 87

Query: 61  VDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLLTTKFESLRIMEEETITEYNV 120
           VDLN+FKLIN  +TAK+AWK+LEVA+EGTSKVK SRL L+T KFE++R+ E+E +++YN 
Sbjct: 88  VDLNVFKLINFCITAKEAWKTLEVAYEGTSKVKISRLQLITFKFEAMRMTEDELVSDYNK 147

Query: 121 RVLEIANDSLIL 132
           RVLE AN+SL+L
Sbjct: 148 RVLENANESLLL 159

BLAST of Cucsat.G12708 vs. NCBI nr
Match: TYK19191.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (433), Expect = 5.61e-51
Identity = 83/132 (62.88%), Postives = 109/132 (82.58%), Query Frame = 0

Query: 1   MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNG 60
           M  ++K+LD KAW+A+  G+ PP +TV+G  VPKPE  WT+AEEQ S+ N+RALNAI NG
Sbjct: 28  MIFFIKTLDGKAWRALVAGYNPPMITVNGVSVPKPEVDWTNAEEQASVGNARALNAIFNG 87

Query: 61  VDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLLTTKFESLRIMEEETITEYNV 120
           VDLN+FKLIN  +TAK+AWK+LEVA+EGTSKVK SRL L+T KFE++R+ E+E +++YN 
Sbjct: 88  VDLNVFKLINFCITAKEAWKTLEVAYEGTSKVKISRLQLITFKFEAMRMTEDELVSDYNK 147

Query: 121 RVLEIANDSLIL 132
           RVLE AN+SL+L
Sbjct: 148 RVLENANESLLL 159

BLAST of Cucsat.G12708 vs. NCBI nr
Match: KAA0060333.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK22082.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (433), Expect = 6.53e-51
Identity = 82/132 (62.12%), Postives = 110/132 (83.33%), Query Frame = 0

Query: 1   MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNG 60
           M  ++K+LD KAW+A+  G+ PP +TV+G  VPKPE  WTDAEEQ S+ N++ALN+I NG
Sbjct: 28  MIFFIKTLDGKAWRALVAGYNPPMITVNGVSVPKPEVDWTDAEEQASVGNAKALNSIFNG 87

Query: 61  VDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLLTTKFESLRIMEEETITEYNV 120
           VDLN+FKLINS  T K+AWK+LEVA+EGTSKVK S L L+T+KFE+LR+ ++E++++YN 
Sbjct: 88  VDLNIFKLINSSSTTKEAWKTLEVAYEGTSKVKISILQLITSKFEALRMTKDESVSDYNK 147

Query: 121 RVLEIANDSLIL 132
           RVLEIAN+SL+L
Sbjct: 148 RVLEIANESLLL 159

BLAST of Cucsat.G12708 vs. ExPASy TrEMBL
Match: A0A5A7TB93 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1170G00550 PE=4 SV=1)

HSP 1 Score: 174 bits (441), Expect = 9.26e-53
Identity = 88/138 (63.77%), Postives = 112/138 (81.16%), Query Frame = 0

Query: 1   MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNG 60
           M  ++K+LD KAW+A+  G++PP VTV+G  V KPE  WTDAEEQ S+ N+RA+NAI NG
Sbjct: 1   MIFFIKTLDGKAWRALVGGYEPPMVTVNGVSVSKPEIDWTDAEEQASVGNARAINAIFNG 60

Query: 61  VDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLLTTKFESLRIMEEETITEYNV 120
           VDLN+FKLINS  TAK AWK LEVA+EGTSKVK SRL L+T+KFE+L++ E+ET++ YN 
Sbjct: 61  VDLNVFKLINSCTTAKKAWKILEVAYEGTSKVKISRLQLITSKFEALKMTEDETVSIYNE 120

Query: 121 RVLEIANDSLILVKEFQK 138
           RVLEIANDSL+L ++  K
Sbjct: 121 RVLEIANDSLLLGEKISK 138

BLAST of Cucsat.G12708 vs. ExPASy TrEMBL
Match: A0A5D3B9Q8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2612G00480 PE=4 SV=1)

HSP 1 Score: 173 bits (439), Expect = 1.86e-52
Identity = 88/138 (63.77%), Postives = 112/138 (81.16%), Query Frame = 0

Query: 1   MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNG 60
           M  ++K+LD KAW+A+  G++PP VTV+G  V KPE  WTDAEEQ S+ N+RA+NAI NG
Sbjct: 1   MIFFIKTLDGKAWRALVGGYEPPMVTVNGVSVLKPEIDWTDAEEQASVGNARAINAIFNG 60

Query: 61  VDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLLTTKFESLRIMEEETITEYNV 120
           VDLN+FKLINS  TAK AWK LEVA+EGTSKVK SRL L+T+KFE+L++ E+ET++ YN 
Sbjct: 61  VDLNVFKLINSCTTAKKAWKILEVAYEGTSKVKISRLQLITSKFEALKMTEDETVSIYNE 120

Query: 121 RVLEIANDSLILVKEFQK 138
           RVLEIANDSL+L ++  K
Sbjct: 121 RVLEIANDSLLLGEKISK 138

BLAST of Cucsat.G12708 vs. ExPASy TrEMBL
Match: A0A5A7UEG1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G001800 PE=4 SV=1)

HSP 1 Score: 171 bits (434), Expect = 1.92e-51
Identity = 83/132 (62.88%), Postives = 109/132 (82.58%), Query Frame = 0

Query: 1   MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNG 60
           M  ++K+LD KAW+A+  G+ PP +TV+G  VPKPE  WT+AEEQ S+ N+RALNAI NG
Sbjct: 28  MIFFIKTLDGKAWRALMAGYNPPMITVNGVSVPKPEVDWTNAEEQASVGNARALNAIFNG 87

Query: 61  VDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLLTTKFESLRIMEEETITEYNV 120
           VDLN+FKLIN  +TAK+AWK+LEVA+EGTSKVK SRL L+T KFE++R+ E+E +++YN 
Sbjct: 88  VDLNVFKLINFCITAKEAWKTLEVAYEGTSKVKISRLQLITFKFEAMRMTEDELVSDYNK 147

Query: 121 RVLEIANDSLIL 132
           RVLE AN+SL+L
Sbjct: 148 RVLENANESLLL 159

BLAST of Cucsat.G12708 vs. ExPASy TrEMBL
Match: A0A5D3D6K4 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G001280 PE=4 SV=1)

HSP 1 Score: 171 bits (433), Expect = 2.72e-51
Identity = 83/132 (62.88%), Postives = 109/132 (82.58%), Query Frame = 0

Query: 1   MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNG 60
           M  ++K+LD KAW+A+  G+ PP +TV+G  VPKPE  WT+AEEQ S+ N+RALNAI NG
Sbjct: 28  MIFFIKTLDGKAWRALVAGYNPPMITVNGVSVPKPEVDWTNAEEQASVGNARALNAIFNG 87

Query: 61  VDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLLTTKFESLRIMEEETITEYNV 120
           VDLN+FKLIN  +TAK+AWK+LEVA+EGTSKVK SRL L+T KFE++R+ E+E +++YN 
Sbjct: 88  VDLNVFKLINFCITAKEAWKTLEVAYEGTSKVKISRLQLITFKFEAMRMTEDELVSDYNK 147

Query: 121 RVLEIANDSLIL 132
           RVLE AN+SL+L
Sbjct: 148 RVLENANESLLL 159

BLAST of Cucsat.G12708 vs. ExPASy TrEMBL
Match: A0A5D3DER3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00670 PE=4 SV=1)

HSP 1 Score: 171 bits (433), Expect = 3.16e-51
Identity = 82/132 (62.12%), Postives = 110/132 (83.33%), Query Frame = 0

Query: 1   MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNG 60
           M  ++K+LD KAW+A+  G+ PP +TV+G  VPKPE  WTDAEEQ S+ N++ALN+I NG
Sbjct: 28  MIFFIKTLDGKAWRALVAGYNPPMITVNGVSVPKPEVDWTDAEEQASVGNAKALNSIFNG 87

Query: 61  VDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLLTTKFESLRIMEEETITEYNV 120
           VDLN+FKLINS  T K+AWK+LEVA+EGTSKVK S L L+T+KFE+LR+ ++E++++YN 
Sbjct: 88  VDLNIFKLINSSSTTKEAWKTLEVAYEGTSKVKISILQLITSKFEALRMTKDESVSDYNK 147

Query: 121 RVLEIANDSLIL 132
           RVLEIAN+SL+L
Sbjct: 148 RVLEIANESLLL 159

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0038891.11.91e-5263.77gag-pol polyprotein [Cucumis melo var. makuwa][more]
TYJ96033.13.85e-5263.77gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0053604.13.96e-5162.88gag-pol polyprotein [Cucumis melo var. makuwa][more]
TYK19191.15.61e-5162.88gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0060333.16.53e-5162.12gag-pol polyprotein [Cucumis melo var. makuwa] >TYK22082.1 gag-pol polyprotein [... [more]
Match NameE-valueIdentityDescription
A0A5A7TB939.26e-5363.77Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1170... [more]
A0A5D3B9Q81.86e-5263.77Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2612... [more]
A0A5A7UEG11.92e-5162.88Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G... [more]
A0A5D3D6K42.72e-5162.88Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G... [more]
A0A5D3DER33.16e-5162.12Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 49..128
e-value: 6.1E-10
score: 39.0
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 1..136
NoneNo IPR availablePANTHERPTHR34676:SF4OS06G0684500 PROTEINcoord: 1..136

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G12708.T1Cucsat.G12708.T1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding