Cucsat.G12698 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G12698
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	50S ribosomal protein L25
Location	ctg1838: 2634836 .. 2636306 (-)
RNA-Seq Expression	Cucsat.G12698
Synteny	Cucsat.G12698

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCCAAATCAAAATTAGACCAAAATGGAAAAGGCCTATTAGCCCAGCCCACTAAAAAAGAAAGAGAAAACAGAAACACACCCGTGAGAATTCCAGCCGCCTCACCTTCAACTCTCGCTCTTACTTCACTCCAACCGCGACGGCGACGGCGACGGCAACGACAGCCGGCGGCCAATTTTCTGTCCCTTCAACCTCTCCAGCTTCCTTCCATCGGAGTCCTCACTGGAGACAACTTGTATGAATTGAGCAAAAATCGGTCAAATATCCGTTTAAAATTCTGAACTAAAACCCTTTCTTAACCCCTTCCGATCATTCTTTTCCGCCCAATGCTACGCTTCTACCGCTCCCCCACACTCTCCCGAGTCCTCCTCCGGCGGTACTCCGCCGCCACCGCCCCCGCCACTGCCCCCGCCTTCGATTCCGTTTCCGAACCTCTATTTTCGTACTTGGAGGGATTTCCAAAACCAGATCCCAAATACGCCGAGACGATCCTCGCCATTCCTCGCTCCATCTCCGGCAAGAGCATTTCCGCTAAAGAGCGCAAGGCTGGCCGCGTTCCAAGCATCGTATTCGAGCAAGAGGACGGCCAACATGGCGGTAATAAGCGTCTGATATCTGTACGGACTAACCAGATCGTGAAGCTTGTCAAAAATCTCGGTCGCTCCTTCTTCCTCTCCAGGCTTTTCGATCTTGAGGTTCTGTCCGACTTCGAGTCCGGGGATATTGTCGAGAAGGTTCGGGTTTTACCTCGGAAGGTACTCTATTATCATGTTTTAGGAAGAATCAGTAGTTCTTCTCATATTAGATACGATTTCTGTAAATTGCTTTTAGGAAGTTGTATGATATTTCCAACTTACTGAGTTTGGGAAGTGATTTACAAGAAGGCTTGAAATAATTACGATTGTTTCATGGGGGAGAAAGATTATGTTTTGTACTTTGGGGTACATATTCTTGCACCATTAGATATTTCATATGCTTAAATGAGGAACCCATCTATTTTAGCCTTTTGCTTTGTGCTGAGAGAATTATGCCCCTACTTTGGGAACTCTAATGTCTAACTCTAATGTCATGATCATTATGTTTCATCTCTATGTTTTGATTAATCAGAATATAAAAAGATGGGTTTAGTTTAGTTTTGATTACAAGTTAGTGTAAGTTCTTGTGAGACTGTATTTGAGTTAGATAATAGCCATTTTGAACTTGCACCGTCCATGTTTTTTCAGATTCATCTTCATGCGGGAACAGATGCTCCACTTAACGTTACTTTCATAAGGGCACCTTCACATGCTGTATTAAAAGTTGATGTACCTCTTGTGTTCAGAGGGGAAGATGTATGTCCTGGATTGCGAAAAGGTACTACTACAAGACTAAGTTCCTTGTATTCTATTTTCTGTAGTCTGGTAATATTATGTAGTAATAGGCAGCTATAGTAGTTTATGGGTTGGATTCTTAAATTCTCAAGCTAGACGGGGATATGGATCTAAATGTGTTAACATTTCCAGAATAGCTAGTACTAGATTGGAGGATCAGGTTGGTTTTCTGTTAGATTGAGTGGAAAGGATCTAGTTTCTGTTTTTGCAATGTACTTAAATCTTTCCAAAGAAGAATAAAACCGCACCTGAAAGAAAGTGTTGGAAGTATTTTTTGTTTTCTTTGTAGCTTGTAGTTTTCATTTGTACTCTTTTTGAAGTTTCTGATCTACTTGGAAATAGTTTGTGTTCCAATAGAGAATCACAGGATGTGATCCTGATATGTAGTTTCAGAAGGGAATAATTATATTTTTACTCCTCTGATGACCATTTTTCTAATGTTTAACAAATTCTACAGGATCTTATTTGAATACAATTAAGAGGACTGTTAAATACCTTTGCCCTGCTGATATTATTCCCCCATATATCGATGTGGATCTGAGTGAGTTAGATGTTGGCCAAAAGTTGGTTATGGGTGACCTCAAGGTTCATCCTGCGTTAAAGCTTGTTAAGTCAAAGGACGAGCCTGTTTGTAAGATTGCGGGAGCCAGAGTTTCTGATCAACAAAAGAAATCAAAATAGAGTCCATTGGATTATCAAGTTGATTCGGCATAATAGCTTCTTTAGTTCAGGACGGCGAGTCTGTTTGTAAGATTATGGGAGCCTGGATTTTCTGAACAGCCAAAGAAATCTAAATAAAACCCTCCAGATTTTGATATTCCTTGATTTATAAATTTTCTCCCAATATTTTAGCTGTTCCTTGGGAAGCACATTGCTTTTTTTATGGTTCATTAGCATTTATTGGATTTTTCTCTGTTCATGGAATGCTTGAACTCTGCTAAGTGACAAAATATTCTCTCTTTATTGTTATTATTTTTTTAGAAGGGGAGGAAGTGTTAAGTTTATAATTGAAAGAAGCATTTGTAACATATTATGCGTCTTCTCCTTGCCTTGTATAATGTTATTCAGGGTGCAATTGGAGATTTGGGCAAAAGGGTTGAGAGAAAACAGTATACAAAAAGATGTGGAAAGATAGTTGCCAACAGAGTTTTGCTTTGTCGTAGAATGATATAA

Coding sequence (CDS)

ATGCTACGCTTCTACCGCTCCCCCACACTCTCCCGAGTCCTCCTCCGGCGGTACTCCGCCGCCACCGCCCCCGCCACTGCCCCCGCCTTCGATTCCGTTTCCGAACCTCTATTTTCGTACTTGGAGGGATTTCCAAAACCAGATCCCAAATACGCCGAGACGATCCTCGCCATTCCTCGCTCCATCTCCGGCAAGAGCATTTCCGCTAAAGAGCGCAAGGCTGGCCGCGTTCCAAGCATCGTATTCGAGCAAGAGGACGGCCAACATGGCGGTAATAAGCGTCTGATATCTGTACGGACTAACCAGATCGTGAAGCTTGTCAAAAATCTCGGTCGCTCCTTCTTCCTCTCCAGGCTTTTCGATCTTGAGGTTCTGTCCGACTTCGAGTCCGGGGATATTGTCGAGAAGGTTCGGGTTTTACCTCGGAAGATTCATCTTCATGCGGGAACAGATGCTCCACTTAACGTTACTTTCATAAGGGCACCTTCACATGCTGTATTAAAAGTTGATGTACCTCTTGTGTTCAGAGGGGAAGATGTATGTCCTGGATTGCGAAAAGGATCTTATTTGAATACAATTAAGAGGACTGTTAAATACCTTTGCCCTGCTGATATTATTCCCCCATATATCGATGTGGATCTGAGTGAGTTAGATGTTGGCCAAAAGTTGGTTATGGGTGACCTCAAGGTTCATCCTGCGTTAAAGCTTGTTAAGTCAAAGGACGAGCCTGTTTGTAAGATTGCGGGAGCCAGAGTTTCTGATCAACAAAAGAAATCAAAATAG

Protein sequence

MLRFYRSPTLSRVLLRRYSAATAPATAPAFDSVSEPLFSYLEGFPKPDPKYAETILAIPRSISGKSISAKERKAGRVPSIVFEQEDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKGSYLNTIKRTVKYLCPADIIPPYIDVDLSELDVGQKLVMGDLKVHPALKLVKSKDEPVCKIAGARVSDQQKKSK

Homology

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BLAST of Cucsat.G12698 vs. ExPASy Swiss-Prot
Match: B2IG64 (50S ribosomal protein L25 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIMB 8712) OX=395963 GN=rplY PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11
Identity = 45/140 (32.14%), Postives = 69/140 (49.29%), Query Frame = 0


Query: 29  ETILAIPRSISGKSISAKERKAGRVPSIVFEQEDGQHGGNKRLISVRTNQIVKLVKNLGR 88
           +T+ A  R  +GK  +   R+ GR+P +++   D         I++   ++ KL+     
Sbjct: 5   KTLAATVRGGTGKGAARSIRREGRIPGVIYGGGDAPEP-----ITLDYRELNKLIY---A 64

Query: 89  SFFLSRLFDLEVLSDFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHAVLKVDVP 148
             FL+ +FD+EV           K RV+PR   L      PL+V F+R    A LKV VP
Sbjct: 65  GHFLTTIFDIEVEG--------AKQRVVPRDYQLDPVKGQPLHVDFLRLKPGATLKVSVP 124

Query: 149 LVFRGEDVCPGLRKGTTTRL 169
           + F   D+CPGL+KG T  +
Sbjct: 125 IHFINADICPGLKKGGTLNI 128

[Close]

BLAST of Cucsat.G12698 vs. ExPASy Swiss-Prot
Match: Q2G6G9 (50S ribosomal protein L25 OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=rplY PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.2e-11
Identity = 40/128 (31.25%), Postives = 66/128 (51.56%), Query Frame = 0


Query: 36  RSISGKSISAKERKAGRVPSIVFEQEDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRL 95
           R  +GK  S   R+ GR P++++       GGN+  +++   +   LVK LG   F + +
Sbjct: 12  RDRAGKGASRALRREGRTPAVIY-------GGNEEPVAIHLEE-KALVKALGTGHFFNSV 71

Query: 96  FDLEVLSDFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGED 155
            +L V          + VR LP+ +  H  TD P +  F+R    +V+ V+VP++F  E+
Sbjct: 72  VELTVGG--------QTVRTLPKDVAFHPVTDRPEHADFLRVSKDSVVHVNVPVIFANEE 123

Query: 156 VCPGLRKG 164
             PGL+KG
Sbjct: 132 KSPGLKKG 123

[Close]

BLAST of Cucsat.G12698 vs. ExPASy Swiss-Prot
Match: Q3SPM6 (50S ribosomal protein L25 OS=Nitrobacter winogradskyi (strain ATCC 25391 / DSM 10237 / CIP 104748 / NCIMB 11846 / Nb-255) OX=323098 GN=rplY PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.7e-11
Identity = 44/136 (32.35%), Postives = 70/136 (51.47%), Query Frame = 0


Query: 33  AIPRSISGKSISAKERKAGRVPSIVFEQEDGQHGGNKRLISVRTNQIVKLVKNLGRSFFL 92
           A  R  SGK  +  ER+AGRVP++++        GNK+     + +  +L + +    FL
Sbjct: 9   ATARPKSGKGAARAERRAGRVPAVIY--------GNKQPPQPISVEEPELRQRILAGRFL 68

Query: 93  SRLFDLEVLSDFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFR 152
           + +FD+ +          +K RV+PR  HL    D P++V F+R    A ++V VPL   
Sbjct: 69  TTIFDINLDG--------KKHRVIPRDFHLDPVKDFPIHVDFMRLGEGATIRVSVPLRLL 128

Query: 153 GEDVCPGLRKGTTTRL 169
             DV PG+++G T  L
Sbjct: 129 KADVAPGVKRGGTVNL 128

[Close]

BLAST of Cucsat.G12698 vs. ExPASy Swiss-Prot
Match: Q219F9 (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain BisB18) OX=316056 GN=rplY PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.7e-11
Identity = 41/136 (30.15%), Postives = 70/136 (51.47%), Query Frame = 0


Query: 33  AIPRSISGKSISAKERKAGRVPSIVFEQEDGQHGGNKRLISVRTNQIVKLVKNLGRSFFL 92
           A  R   GK  +  ER+AGRVP +++       G NK  +++  +   +L   +    FL
Sbjct: 9   ATARPAGGKGAARAERRAGRVPGVIY-------GDNKPPVTISVDD-TELRARILAGRFL 68

Query: 93  SRLFDLEVLSDFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFR 152
           + +FD+E+          +K RV+PR  HL    D P++V F+R    A+++V VPL  +
Sbjct: 69  TTIFDVELDG--------QKHRVIPRDFHLDPVRDFPIHVDFLRLGEGALIRVSVPLHLK 128

Query: 153 GEDVCPGLRKGTTTRL 169
             +  PG+++G T  +
Sbjct: 129 NAEGAPGVKRGGTVNI 128

[Close]

BLAST of Cucsat.G12698 vs. ExPASy Swiss-Prot
Match: B8EK41 (50S ribosomal protein L25 OS=Methylocella silvestris (strain DSM 15510 / CIP 108128 / LMG 27833 / NCIMB 13906 / BL2) OX=395965 GN=rplY PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 43/140 (30.71%), Postives = 70/140 (50.00%), Query Frame = 0


Query: 29  ETILAIPRSISGKSISAKERKAGRVPSIVFEQEDGQHGGNKRLISVRTNQIVKLVKNLGR 88
           +T+ A  R  +GK  +   R+ GR+P +++       GG      + T    +L K +  
Sbjct: 5   KTLAAAARHGTGKGAARSVRREGRIPGVIY-------GGGDPAEPI-TLDYRELNKLIYA 64

Query: 89  SFFLSRLFDLEVLSDFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHAVLKVDVP 148
             FL+ LF+++V           K RV+PR   L    D PL+V F+R    A LKV+VP
Sbjct: 65  GHFLTTLFEIDVAG--------TKQRVIPRDYQLDPIKDLPLHVDFLRLKPGASLKVEVP 124

Query: 149 LVFRGEDVCPGLRKGTTTRL 169
           + F  ++ CPG++KG +  +
Sbjct: 125 VHFLNQETCPGVKKGGSVNI 128

[Close]

BLAST of Cucsat.G12698 vs. NCBI nr
Match: XP_004136661.1 (uncharacterized protein LOC101205251 [Cucumis sativus] >KGN59487.1 hypothetical protein Csa_001495 [Cucumis sativus])

HSP 1 Score: 324 bits (830), Expect = 9.34e-110
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   ATAPAFDSVSEPLFSYLEGFPKPDPKYAETILAIPRSISGKSISAKERKAGRVPSIVFEQ 60
           ATAPAFDSVSEPLFSYLEGFPKPDPKYAETILAIPRSISGKSISAKERKAGRVPSIVFEQ
Sbjct: 25  ATAPAFDSVSEPLFSYLEGFPKPDPKYAETILAIPRSISGKSISAKERKAGRVPSIVFEQ 84

Query: 61  EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRKI 120
           EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRKI
Sbjct: 85  EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRKI 144

Query: 121 HLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKGT 164
           HLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKG+
Sbjct: 145 HLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKGS 188

[Close]

BLAST of Cucsat.G12698 vs. NCBI nr
Match: XP_008443303.1 (PREDICTED: 50S ribosomal protein L25 [Cucumis melo] >TYK25557.1 50S ribosomal protein L25 [Cucumis melo var. makuwa])

HSP 1 Score: 310 bits (794), Expect = 3.01e-104
Identity = 155/164 (94.51%), Postives = 159/164 (96.95%), Query Frame = 0


Query: 1   ATAPAFDSVSEPLFSYLEGFPKPDPKYAETILAIPRSISGKSISAKERKAGRVPSIVFEQ 60
           AT PA DSVSEPLFSYLEGFPKPDPKYAETILAIPRS SGK+I AKERK GRVPSI+FEQ
Sbjct: 27  ATDPALDSVSEPLFSYLEGFPKPDPKYAETILAIPRSTSGKTICAKERKVGRVPSILFEQ 86

Query: 61  EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRKI 120
           EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPR+I
Sbjct: 87  EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRQI 146

Query: 121 HLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKGT 164
           HLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKG+
Sbjct: 147 HLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKGS 190

[Close]

BLAST of Cucsat.G12698 vs. NCBI nr
Match: XP_022975178.1 (uncharacterized protein LOC111474218, partial [Cucurbita maxima])

HSP 1 Score: 300 bits (769), Expect = 1.93e-101
Identity = 150/170 (88.24%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 1   ATAPAFDSVSEPLFSYLEGFPKPDPKYAETILAIPRSISGKSISAKERKAGRVPSIVFEQ 60
           ATAP  DS  EP FSYLEGFP+PDPK+AETILAIPRSISGK+IS KERK GR PSIVFEQ
Sbjct: 25  ATAPPLDSDPEPSFSYLEGFPRPDPKFAETILAIPRSISGKNISVKERKVGRTPSIVFEQ 84

Query: 61  EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRKI 120
           EDGQHGGNKRLISVRTNQ+ KLV +LGRSFFLSRLFDLEV S+FESGDIVEKVRVLPRKI
Sbjct: 85  EDGQHGGNKRLISVRTNQVRKLVNHLGRSFFLSRLFDLEVRSEFESGDIVEKVRVLPRKI 144

Query: 121 HLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKGTTTRLSS 170
           HLHAGTDAPLNVTFIRAPSHA+LKVDVPLVFRGEDVCPGLRKGT  RLSS
Sbjct: 145 HLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDVCPGLRKGTAARLSS 194

[Close]

BLAST of Cucsat.G12698 vs. NCBI nr
Match: KAA0053843.1 (50S ribosomal protein L25 [Cucumis melo var. makuwa])

HSP 1 Score: 300 bits (768), Expect = 4.50e-100
Identity = 155/179 (86.59%), Postives = 159/179 (88.83%), Query Frame = 0


Query: 1   ATAPAFDSVSEPLFSYLEGFPKPDPKYAETILAIPRSISGKSISAKERKAGRVPSIVFEQ 60
           AT PA DSVSEPLFSYLEGFPKPDPKYAETILAIPRS SGK+I AKERK GRVPSI+FEQ
Sbjct: 27  ATDPALDSVSEPLFSYLEGFPKPDPKYAETILAIPRSTSGKTICAKERKVGRVPSILFEQ 86

Query: 61  EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRK- 120
           EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPR+ 
Sbjct: 87  EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRQL 146

Query: 121 --------------IHLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKGT 164
                         IHLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKG+
Sbjct: 147 DNSHFELAPFMFVQIHLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKGS 205

[Close]

BLAST of Cucsat.G12698 vs. NCBI nr
Match: XP_022950760.1 (uncharacterized protein LOC111453766 [Cucurbita moschata] >KAG6596970.1 hypothetical protein SDJN03_10150, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028444.1 rplY [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298 bits (764), Expect = 1.03e-99
Identity = 150/164 (91.46%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 1   ATAPAFDSVSEPLFSYLEGFPKPDPKYAETILAIPRSISGKSISAKERKAGRVPSIVFEQ 60
           ATAP  DS  EP FSYLEGFPKPDPKYAETILAIPRSISGK+ISAKERK GRVPSIVFEQ
Sbjct: 25  ATAPPLDSDPEPSFSYLEGFPKPDPKYAETILAIPRSISGKNISAKERKVGRVPSIVFEQ 84

Query: 61  EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRKI 120
           EDGQHGGNKRLISVRTNQI KLV +LGRSFFLSRLFDLEV S+FESGDIVEKVRVLPRKI
Sbjct: 85  EDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLFDLEVRSEFESGDIVEKVRVLPRKI 144

Query: 121 HLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKGT 164
           HLHAGTDAPLNVTFIRAPSHA+LKVDVPLVFRGEDVCPGLRKG+
Sbjct: 145 HLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDVCPGLRKGS 188

[Close]

BLAST of Cucsat.G12698 vs. ExPASy TrEMBL
Match: A0A0A0LFM4 (Ribosomal_TL5_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G822380 PE=4 SV=1)

HSP 1 Score: 324 bits (830), Expect = 4.52e-110
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   ATAPAFDSVSEPLFSYLEGFPKPDPKYAETILAIPRSISGKSISAKERKAGRVPSIVFEQ 60
           ATAPAFDSVSEPLFSYLEGFPKPDPKYAETILAIPRSISGKSISAKERKAGRVPSIVFEQ
Sbjct: 25  ATAPAFDSVSEPLFSYLEGFPKPDPKYAETILAIPRSISGKSISAKERKAGRVPSIVFEQ 84

Query: 61  EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRKI 120
           EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRKI
Sbjct: 85  EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRKI 144

Query: 121 HLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKGT 164
           HLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKG+
Sbjct: 145 HLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKGS 188

[Close]

BLAST of Cucsat.G12698 vs. ExPASy TrEMBL
Match: A0A5D3DPH9 (50S ribosomal protein L25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007100 PE=4 SV=1)

HSP 1 Score: 310 bits (794), Expect = 1.46e-104
Identity = 155/164 (94.51%), Postives = 159/164 (96.95%), Query Frame = 0


Query: 1   ATAPAFDSVSEPLFSYLEGFPKPDPKYAETILAIPRSISGKSISAKERKAGRVPSIVFEQ 60
           AT PA DSVSEPLFSYLEGFPKPDPKYAETILAIPRS SGK+I AKERK GRVPSI+FEQ
Sbjct: 27  ATDPALDSVSEPLFSYLEGFPKPDPKYAETILAIPRSTSGKTICAKERKVGRVPSILFEQ 86

Query: 61  EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRKI 120
           EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPR+I
Sbjct: 87  EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRQI 146

Query: 121 HLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKGT 164
           HLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKG+
Sbjct: 147 HLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKGS 190

[Close]

BLAST of Cucsat.G12698 vs. ExPASy TrEMBL
Match: A0A1S3B7N9 (50S ribosomal protein L25 OS=Cucumis melo OX=3656 GN=LOC103486925 PE=4 SV=1)

HSP 1 Score: 310 bits (794), Expect = 1.46e-104
Identity = 155/164 (94.51%), Postives = 159/164 (96.95%), Query Frame = 0


Query: 1   ATAPAFDSVSEPLFSYLEGFPKPDPKYAETILAIPRSISGKSISAKERKAGRVPSIVFEQ 60
           AT PA DSVSEPLFSYLEGFPKPDPKYAETILAIPRS SGK+I AKERK GRVPSI+FEQ
Sbjct: 27  ATDPALDSVSEPLFSYLEGFPKPDPKYAETILAIPRSTSGKTICAKERKVGRVPSILFEQ 86

Query: 61  EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRKI 120
           EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPR+I
Sbjct: 87  EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRQI 146

Query: 121 HLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKGT 164
           HLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKG+
Sbjct: 147 HLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKGS 190

[Close]

BLAST of Cucsat.G12698 vs. ExPASy TrEMBL
Match: A0A6J1III2 (uncharacterized protein LOC111474218 OS=Cucurbita maxima OX=3661 GN=LOC111474218 PE=4 SV=1)

HSP 1 Score: 300 bits (769), Expect = 9.33e-102
Identity = 150/170 (88.24%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 1   ATAPAFDSVSEPLFSYLEGFPKPDPKYAETILAIPRSISGKSISAKERKAGRVPSIVFEQ 60
           ATAP  DS  EP FSYLEGFP+PDPK+AETILAIPRSISGK+IS KERK GR PSIVFEQ
Sbjct: 25  ATAPPLDSDPEPSFSYLEGFPRPDPKFAETILAIPRSISGKNISVKERKVGRTPSIVFEQ 84

Query: 61  EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRKI 120
           EDGQHGGNKRLISVRTNQ+ KLV +LGRSFFLSRLFDLEV S+FESGDIVEKVRVLPRKI
Sbjct: 85  EDGQHGGNKRLISVRTNQVRKLVNHLGRSFFLSRLFDLEVRSEFESGDIVEKVRVLPRKI 144

Query: 121 HLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKGTTTRLSS 170
           HLHAGTDAPLNVTFIRAPSHA+LKVDVPLVFRGEDVCPGLRKGT  RLSS
Sbjct: 145 HLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDVCPGLRKGTAARLSS 194

[Close]

BLAST of Cucsat.G12698 vs. ExPASy TrEMBL
Match: A0A5A7UD34 (50S ribosomal protein L25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G002340 PE=4 SV=1)

HSP 1 Score: 300 bits (768), Expect = 2.18e-100
Identity = 155/179 (86.59%), Postives = 159/179 (88.83%), Query Frame = 0


Query: 1   ATAPAFDSVSEPLFSYLEGFPKPDPKYAETILAIPRSISGKSISAKERKAGRVPSIVFEQ 60
           AT PA DSVSEPLFSYLEGFPKPDPKYAETILAIPRS SGK+I AKERK GRVPSI+FEQ
Sbjct: 27  ATDPALDSVSEPLFSYLEGFPKPDPKYAETILAIPRSTSGKTICAKERKVGRVPSILFEQ 86

Query: 61  EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRK- 120
           EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPR+ 
Sbjct: 87  EDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRQL 146

Query: 121 --------------IHLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKGT 164
                         IHLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKG+
Sbjct: 147 DNSHFELAPFMFVQIHLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKGS 205

The following BLAST results are available for this feature:

BLAST of Cucsat.G12698 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B2IG64	2.3e-11	32.14	50S ribosomal protein L25 OS=Beijerinckia indica subsp. indica (strain ATCC 9039...	[more]
Q2G6G9	5.2e-11	31.25	50S ribosomal protein L25 OS=Novosphingobium aromaticivorans (strain ATCC 700278...	[more]
Q3SPM6	6.7e-11	32.35	50S ribosomal protein L25 OS=Nitrobacter winogradskyi (strain ATCC 25391 / DSM 1...	[more]
Q219F9	6.7e-11	30.15	50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain BisB18) OX=31605...	[more]
B8EK41	1.5e-10	30.71	50S ribosomal protein L25 OS=Methylocella silvestris (strain DSM 15510 / CIP 108...	[more]

BLAST of Cucsat.G12698 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136661.1	9.34e-110	99.39	uncharacterized protein LOC101205251 [Cucumis sativus] >KGN59487.1 hypothetical ...	[more]
XP_008443303.1	3.01e-104	94.51	PREDICTED: 50S ribosomal protein L25 [Cucumis melo] >TYK25557.1 50S ribosomal pr...	[more]
XP_022975178.1	1.93e-101	88.24	uncharacterized protein LOC111474218, partial [Cucurbita maxima]	[more]
KAA0053843.1	4.50e-100	86.59	50S ribosomal protein L25 [Cucumis melo var. makuwa]	[more]
XP_022950760.1	1.03e-99	91.46	uncharacterized protein LOC111453766 [Cucurbita moschata] >KAG6596970.1 hypothet...	[more]

BLAST of Cucsat.G12698 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFM4	4.52e-110	99.39	Ribosomal_TL5_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G82...	[more]
A0A5D3DPH9	1.46e-104	94.51	50S ribosomal protein L25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3B7N9	1.46e-104	94.51	50S ribosomal protein L25 OS=Cucumis melo OX=3656 GN=LOC103486925 PE=4 SV=1	[more]
A0A6J1III2	9.33e-102	88.24	uncharacterized protein LOC111474218 OS=Cucurbita maxima OX=3661 GN=LOC111474218...	[more]
A0A5A7UD34	2.18e-100	86.59	50S ribosomal protein L25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020057	Ribosomal protein L25, beta domain	PFAM	PF14693	Ribosomal_TL5_C	coord: 41..124 e-value: 9.7E-22 score: 77.1
IPR037121	Ribosomal protein L25, C-terminal	GENE3D	2.170.120.20	Ribosomal protein L25, beta domain	coord: 38..130 e-value: 1.3E-18 score: 69.0
None	No IPR available	PANTHER	PTHR33284:SF4	BNAA01G13300D PROTEIN	coord: 17..132
None	No IPR available	PANTHER	PTHR33284	RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN	coord: 17..132
IPR011035	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily	SUPERFAMILY	50715	Ribosomal protein L25-like	coord: 10..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G12698.T1	Cucsat.G12698.T1	mRNA
Cucsat.G12698.T2	Cucsat.G12698.T2	mRNA
Cucsat.G12698.T3	Cucsat.G12698.T3	mRNA
Cucsat.G12698.T4	Cucsat.G12698.T4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity
molecular_function	GO:0003735	structural constituent of ribosome