Cucsat.G12684 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G12684
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	ribosomal RNA small subunit methyltransferase NEP1
Location	ctg1838: 2378760 .. 2381343 (-)
RNA-Seq Expression	Cucsat.G12684
Synteny	Cucsat.G12684

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGACGATAGAGCCCAGCCCATAAATCTGCTAATGCAAAAGGTTTCAACTACTCTACAATCAATCTATTCCAAGGGTTTTAGCACTAAGCTTCGACTACCGTCAAGGAAGTTCCTGCTCGGACGAACCATGGTTCGACCATTTGCGGCGAAGGGGAAGAAGAGAAAGAAGTCGGAGAAATACGACAGAGACGAAGATGCCGAAGAATCCACCTCTCCGTCCAAGAAAGTTATGTTGGAGAACGAACCTGATGAAGAACCAGCCAAGGAGGACTTTCATGAACTTGAAGGTATTCCTATTGCTCCGAAAGACCCCAAGAATGATAGCAATGCTGGTGTTATCTTCATCCTTGAAAGAGCTTCTCTGGAAGTTGCCAAAGTTGGGAAGGTAATGTATTGTTTTTCACTTACTGCTTTGAAGTTTTAGGATTTCCTTCATTTTGGGCGTTTAACAAAGTTATTTCATGCTTTTTATGAATTTTAAGAAGCTAATTATTGATTTTATATTCTTGGATTTCCATGTTTCGTGCTTATAGAATTACCAGCTGTTGAATTCTGATGACCACTCCAATTATTTGCGGAGGAATAACAGAAATCCTGGGGATTATAGACCTGATATCTTGCATCAAGTAAGTTGTTGTAGCTCATTGTTGTTTTTTCCCCAATGAAATAGGGAATTGTTTTATGGAATGAAAAATATAATTTTGTATGTTGATTATTTGGGTTTCAGTAGTGATATTAAATGTAAATGATTCAGGCGCTTTTGGCGATTTTCGATAGCCGAATTGCAAAGGCTGGAAGATTGAAAGTTGTTTATGTGAAAACTGAGAAAGGTTTATTAATTGAAATTAAACCATACGTTCGTCTTCCAAGGACGCAGAAACGATTTTATGGAGTTATGTGTAAGTGGATTTGCTTGTTCTAATTTTGCTGGACATCTCTGTTATTTGAGTGTGTTGTAATCAATGCAATTTCCCCTTTTATAGACCTTTCCATTGATCTTTTGACAAATGCTTCGCAGTGCAATTGCTACAAAAGTTAAGCATCACAGCTGCGGGTAAGCGTGAGAAACTCTTTCGGGTGATAAAGAACCCTGTAACTCAGTACTTACCTGCCAATTGTCGTAAAATGGGTAAGCCAATGCATGTCTTCCTCTTTTGTGGGTTTTGGTAGAAACTTTTCATACTCTTTTCTTGCATACCAGGCTTCTCGCATAGTTCGGATAAGTTGGTCAAGGTGCGAAATTATCTGGATGCTGTCAAAGATGATGTAGACCTTGTTTTTGTGGTATCTTCAAACCTCCTAACTGAAAATTACACTTTTTAATGCTTCATTTTTAGATGTATAACGTATGACAACTTCCCTTTATTGCTATGTATTAGGTGGGTGCAATGGCTCATGGGAAAATTGAGACTGATTACACGGATGATCTATTAGCAAGTAAGTTCGTTTACTTTTGCGTGTTTATTCAAGTAATCACATGGGAGTAAATTACCACATAACTATATTTACCTTTAACTTGAAAGTTTTTGACACACTGCGCTCCAAATTACCCTGTCTAACCTATGTTAACCATGGGTTCCAACTACACTACGGAACTCATTGTCAAACTTAAAAACATAATAACACAACACTATTTTGGATATATTGTTGGTATGCCAGGTTAGTTTGGGGCGGAGTGTCTCAAAATTTTCAAGTACTTGTGATTTAGTTATTCATCTGCAGTATGAGATAGAAATTATCATTTAGAAAATGGGTATCAACAGATATTAGCTAGAAAAGGTCTGAGTAAGAGGAAAAAGTCTATAAAGTATCAACAGAGAGAAGTTCGGGGGGCAAAAGTCTATAAAGTAAGAGGAAAAGCAGTACGGTAGAAGGGTTTTAAAGTTCTAACTATTTAAAAAGCATTTCCCAAGATGTCATAGAGTGGATATTGCTTCATAATTGTAACATTTTTATTAGTTAGCAATTGCTCAAACTTCTACTGTTATTCTTGGGTAGTATAAATTTTGTATGAAGTTAAATCCATTGCCTTGGCCTTGGGAATCCTAAATTCTTCAATTTATGCTATATTTGTGCAGTTTCTGAATATCCTCTTAGTGCTAGTTGCTGTATTGCGGATATTTGCAAAGATTTGGCAGAGAAATGGAATGTAGGGTGAACTCTGCTTACAACTCCATCAAAATCAGTGCCTCAACTATCTTGTTTCATATGTTTAGTTATTATTTCAGAAAATATGATCCAGCAGAGTTTTTAGGTTTATTAGTGGAACCATAATAGATCAATATTCCATTTTTTAAATTAAAATATTAATACCTCTTCTAAATTTAATTGAAAGCATAGAACTTTTAGCTGTAAGAAGTGATTGTACTGAATTTTGTCTGAGTTCTTTGCTGTTATCACTTGTGAAGTAAAAGTTTCAACTTATTTATGTCCATTCAATAGGTTGAAATTGAAATCGAGGGTATGTAAGAATTGATCCACGAACTCAGTTTTTTTCCCCTTCCAATATTTGAGATTAGTTGTATTTCAATGGTAACAAAGTTTGATTTCAACTTGAAACTTACTTTGAATCACTCATGGCCT

Coding sequence (CDS)

GACGATAGAGCCCAGCCCATAAATCTGCTAATGCAAAAGGTTTCAACTACTCTACAATCAATCTATTCCAAGGGTTTTAGCACTAAGCTTCGACTACCGTCAAGGAAGTTCCTGCTCGGACGAACCATGGTTCGACCATTTGCGGCGAAGGGGAAGAAGAGAAAGAAGTCGGAGAAATACGACAGAGACGAAGATGCCGAAGAATCCACCTCTCCGTCCAAGAAAGTTATGTTGGAGAACGAACCTGATGAAGAACCAGCCAAGGAGGACTTTCATGAACTTGAAGGTATTCCTATTGCTCCGAAAGACCCCAAGAATGATAGCAATGCTGGTGTTATCTTCATCCTTGAAAGAGCTTCTCTGGAAGTTGCCAAAGTTGGGAAGAATTACCAGCTGTTGAATTCTGATGACCACTCCAATTATTTGCGGAGGAATAACAGAAATCCTGGGGATTATAGACCTGATATCTTGCATCAAGCGCTTTTGGCGATTTTCGATAGCCGAATTGCAAAGGCTGGAAGATTGAAAGTTGTTTATGTGAAAACTGAGAAAGGTTTATTAATTGAAATTAAACCATACGTTCGTCTTCCAAGGACGCAGAAACGATTTTATGGAGTTATGTTGCAATTGCTACAAAAGTTAAGCATCACAGCTGCGGGTAAGCGTGAGAAACTCTTTCGGGTGATAAAGAACCCTGTAACTCAGTACTTACCTGCCAATTGTCGTAAAATGGGCTTCTCGCATAGTTCGGATAAGTTGGTCAAGGTGCGAAATTATCTGGATGCTGTCAAAGATGATGTAGACCTTGTTTTTGTGGTGGGTGCAATGGCTCATGGGAAAATTGAGACTGATTACACGGATGATCTATTAGCAATTTCTGAATATCCTCTTAGTGCTAGTTGCTGTATTGCGGATATTTGCAAAGATTTGGCAGAGAAATGGAATGTAGGGTGA

Protein sequence

DDRAQPINLLMQKVSTTLQSIYSKGFSTKLRLPSRKFLLGRTMVRPFAAKGKKRKKSEKYDRDEDAEESTSPSKKVMLENEPDEEPAKEDFHELEGIPIAPKDPKNDSNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITAAGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVDLVFVVGAMAHGKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG

Homology

[Close]

BLAST of Cucsat.G12684 vs. ExPASy Swiss-Prot
Match: O35130 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus OX=10090 GN=Emg1 PE=1 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.2e-47
Identity = 98/205 (47.80%), Postives = 136/205 (66.34%), Query Frame = 0


Query: 112 VIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILHQALLAIFDSRIAK 171
           +I +LE ASLE  KVGK Y+LLN D H + L +N R+PG+ RPDI HQ+LL + DS + +
Sbjct: 43  LIVVLEGASLETVKVGKTYELLNCDRHKSMLLKNGRDPGEVRPDITHQSLLMLMDSPLNR 102

Query: 172 AGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITAAGKREKLFRVIKN 231
           AG L+ VY+ T+K +LIE+ P  R+PRT  RF G+M+QLL KLS+ AA   +KL +VIKN
Sbjct: 103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 162

Query: 232 PVTQYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVDLVFVVGAMAHGKIETDYTDDLLA 291
           PV+ + P  C K+G S S + +  +R   + V     +VFVVGA AHGK+  +YT+ +++
Sbjct: 163 PVSDHFPVGCMKIGTSFSVEDISDIR---ELVPSSDPVVFVVGAFAHGKVSVEYTEKMVS 222

Query: 292 ISEYPLSASCCIADICKDLAEKWNV 317
           IS YPLSA+   A +     E W V
Sbjct: 223 ISNYPLSAALTCAKVTTAFEEVWGV 243

[Close]

BLAST of Cucsat.G12684 vs. ExPASy Swiss-Prot
Match: Q92979 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens OX=9606 GN=EMG1 PE=1 SV=4)

HSP 1 Score: 189.5 bits (480), Expect = 5.8e-47
Identity = 106/241 (43.98%), Postives = 148/241 (61.41%), Query Frame = 0


Query: 81  EPDEEPAKEDFHELEGIPIAPKDPKNDSNAGV-----IFILERASLEVAKVGKNYQLLNS 140
           +P E    E   + + +P  PK P+  +   +     I +LE ASLE  KVGK Y+LLN 
Sbjct: 9   KPRERSGGEQAQDWDALP--PKRPRLGAGNKIGGRRLIVVLEGASLETVKVGKTYELLNC 68

Query: 141 DDHSNYLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVR 200
           D H + L +N R+PG+ RPDI HQ+LL + DS + +AG L+ VY+ T+K +LIE+ P  R
Sbjct: 69  DKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQ-VYIHTQKNVLIEVNPQTR 128

Query: 201 LPRTQKRFYGVMLQLLQKLSITAAGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVK 260
           +PRT  RF G+M+QLL KLS+ AA   +KL +VIKNPV+ + P  C K+G S S   +  
Sbjct: 129 IPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIPVVSD 188

Query: 261 VRNYLDAVKDDVDLVFVVGAMAHGKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWN 317
           VR   + V     +VFVVGA AHGK+  +YT+ +++IS YPLSA+   A +     E W 
Sbjct: 189 VR---ELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEVWG 243

[Close]

BLAST of Cucsat.G12684 vs. ExPASy Swiss-Prot
Match: Q9W4J5 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Drosophila melanogaster OX=7227 GN=CG3527 PE=3 SV=2)

HSP 1 Score: 188.0 bits (476), Expect = 1.7e-46
Identity = 97/216 (44.91%), Postives = 133/216 (61.57%), Query Frame = 0


Query: 106 NDSNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILHQALLAIF 165
           N +   +I +LE A LE  KV   ++LLN DDH+  +R+N R+PG  RPDI HQ LL +F
Sbjct: 37  NATEKRLIIVLEGAQLETVKVHNTFELLNCDDHAGIMRKNQRDPGSCRPDITHQCLLMLF 96

Query: 166 DSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITAAGKREKL 225
           DS + +AG L+ V+V+TE  +LIEI P  R+PRT KRF G+M+QLL K  I A     +L
Sbjct: 97  DSPLNRAGLLQ-VFVRTEHNVLIEINPQTRIPRTFKRFAGLMVQLLHKFQIRANDSSRRL 156

Query: 226 FRVIKNPVTQYLPANCRKMGFSHSSDKLVKVRNYL-----DAVKDDVDLVFVVGAMAHGK 285
             VIKNP+T ++P  C+K   S S   L   R+ +      +   D  +V V+GA AHG 
Sbjct: 157 MSVIKNPITDHVPVGCKKYAMSFSGKLLPNCRDLVPHGDETSASYDEPVVIVIGAFAHGV 216

Query: 286 IETDYTDDLLAISEYPLSASCCIADICKDLAEKWNV 317
           ++TDYT++L +IS YPLSA+   + IC    E W V
Sbjct: 217 LKTDYTEELFSISNYPLSAAIACSKICSAFEEVWGV 251

[Close]

BLAST of Cucsat.G12684 vs. ExPASy Swiss-Prot
Match: Q06287 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=EMG1 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.2e-45
Identity = 99/230 (43.04%), Postives = 141/230 (61.30%), Query Frame = 0


Query: 97  IPIAPK--DPKNDSNAGVIFILERASLEVAKVGKN------YQLLNSDDHSNYLRRNNRN 156
           +P AP     K+     +I +L  ASLE  K+  N      Y LLN DDH   L++  R+
Sbjct: 24  VPQAPPVLTSKDKITKRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRD 83

Query: 157 PGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVML 216
             + RPDI HQ LL + DS I KAG+L+ VY++T +G+LIE+ P VR+PRT KRF G+M+
Sbjct: 84  ISEARPDITHQCLLTLLDSPINKAGKLQ-VYIQTSRGILIEVNPTVRIPRTFKRFSGLMV 143

Query: 217 QLLQKLSITAAGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVD 276
           QLL KLSI +    EKL +VIKNP+T +LP  CRK+  S  +  +++V++Y++ + DD  
Sbjct: 144 QLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDA-PVIRVQDYIEKLDDDES 203

Query: 277 LVFVVGAMAHGK--IETDYTDDLLAISEYPLSASCCIADICKDLAEKWNV 317
           +   VGAMA GK     +Y D+ + +S YPLSAS   +  C    + WN+
Sbjct: 204 ICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI 251

[Close]

BLAST of Cucsat.G12684 vs. ExPASy Swiss-Prot
Match: Q9XX15 (Ribosomal RNA small subunit methyltransferase nep-1 OS=Caenorhabditis elegans OX=6239 GN=Y39A1A.14 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.1e-45
Identity = 95/202 (47.03%), Postives = 131/202 (64.85%), Query Frame = 0


Query: 115 ILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGR 174
           +LE  SLE AKVG  Y +L+SD H+N+LR+  ++P DYRPDILHQ LL + DS + +AG+
Sbjct: 31  VLEGCSLETAKVGGEYAILSSDKHANFLRKQKKDPADYRPDILHQCLLNLLDSPLNRAGK 90

Query: 175 LKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITAAGKREKLFRVIKNPVT 234
           L+ V+ +T K +L+++ P  R+PRT  RF G+M+QLL KLSI AA   +KL  V+KNPV+
Sbjct: 91  LR-VFFRTSKNVLVDVSPQCRIPRTFDRFCGLMVQLLHKLSIRAAETTQKLMSVVKNPVS 150

Query: 235 QYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVDLVFVVGAMAHGKIETDYTDDLLAISE 294
            +LP   RKM  S +  +L  + N L A + D  LV ++G +A GKI  DY D    IS 
Sbjct: 151 NHLPVGSRKMLMSFNVPELT-MANKLVAPETDEPLVLIIGGIARGKIVVDYNDSETKISN 210

Query: 295 YPLSASCCIADICKDLAEKWNV 317
           YPLSA+   A +   L E W +
Sbjct: 211 YPLSAALTCAKVTSGLEEIWGI 230

[Close]

BLAST of Cucsat.G12684 vs. NCBI nr
Match: XP_004136640.2 (ribosomal RNA small subunit methyltransferase nep-1 [Cucumis sativus] >KAE8651185.1 hypothetical protein Csa_001834 [Cucumis sativus])

HSP 1 Score: 537 bits (1383), Expect = 1.69e-191
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0


Query: 43  MVRPFAAKGKKRKKSEKYDRDEDAEESTSPSKKVMLENEPDEEPAKEDFHELEGIPIAPK 102
           MVRPFAAKGKKRKKSEKYDRDEDAEESTSPSKKVMLENEPDEEPAKEDFHELEGIPIAPK
Sbjct: 1   MVRPFAAKGKKRKKSEKYDRDEDAEESTSPSKKVMLENEPDEEPAKEDFHELEGIPIAPK 60

Query: 103 DPKNDSNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILHQALL 162
           DPKNDSNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILHQALL
Sbjct: 61  DPKNDSNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILHQALL 120

Query: 163 AIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITAAGKR 222
           AIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITAAGKR
Sbjct: 121 AIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITAAGKR 180

Query: 223 EKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVDLVFVVGAMAHGKIE 282
           EKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVDLVFVVGAMAHGKIE
Sbjct: 181 EKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVDLVFVVGAMAHGKIE 240

Query: 283 TDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG 317
           TDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG
Sbjct: 241 TDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG 275

[Close]

BLAST of Cucsat.G12684 vs. NCBI nr
Match: XP_008443268.1 (PREDICTED: ribosomal RNA small subunit methyltransferase NEP1 [Cucumis melo] >KAA0053876.1 ribosomal RNA small subunit methyltransferase NEP1 [Cucumis melo var. makuwa] >TYK25528.1 ribosomal RNA small subunit methyltransferase NEP1 [Cucumis melo var. makuwa])

HSP 1 Score: 522 bits (1345), Expect = 1.04e-185
Identity = 265/275 (96.36%), Postives = 271/275 (98.55%), Query Frame = 0


Query: 43  MVRPFAAKGKKRKKSEKYDRDEDAEESTSPSKKVMLENEPDEEPAKEDFHELEGIPIAPK 102
           MVRPFAAKGKKRKK+EKYDRDED EES+SP+KKVM+ENEPDEEP KEDFHELEGIPI PK
Sbjct: 1   MVRPFAAKGKKRKKAEKYDRDEDGEESSSPAKKVMVENEPDEEPPKEDFHELEGIPIVPK 60

Query: 103 DPKNDSNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILHQALL 162
           DPK D+NAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILHQALL
Sbjct: 61  DPKTDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILHQALL 120

Query: 163 AIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITAAGKR 222
           AIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITAAGKR
Sbjct: 121 AIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITAAGKR 180

Query: 223 EKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVDLVFVVGAMAHGKIE 282
           EKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVK+RNYLDAVKDDVDLVFVVGAMAHGKIE
Sbjct: 181 EKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKMRNYLDAVKDDVDLVFVVGAMAHGKIE 240

Query: 283 TDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG 317
           TDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG
Sbjct: 241 TDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG 275

[Close]

BLAST of Cucsat.G12684 vs. NCBI nr
Match: XP_038905075.1 (ribosomal RNA small subunit methyltransferase nep-1 [Benincasa hispida])

HSP 1 Score: 498 bits (1282), Expect = 4.13e-176
Identity = 252/275 (91.64%), Postives = 263/275 (95.64%), Query Frame = 0


Query: 43  MVRPFAAKGKKRKKSEKYDRDEDAEESTSPSKKVMLENEPDEEPAKEDFHELEGIPIAPK 102
           MVRPFAAKGKKRKKSEKYDRD+D  EST P+KK   ENEPDEEP KEDFHELEGIPI PK
Sbjct: 1   MVRPFAAKGKKRKKSEKYDRDDDDGESTVPAKKPTAENEPDEEPPKEDFHELEGIPIVPK 60

Query: 103 DPKNDSNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILHQALL 162
           DP +D +AGVIF+LERASLEVAKVGKNYQLLNSDDHSN+LR+NNRNPGDYRPDILHQALL
Sbjct: 61  DPNSDKHAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRKNNRNPGDYRPDILHQALL 120

Query: 163 AIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITAAGKR 222
           AIFDSRIAKAGRLK VYVKTEKGLLIE+KPYVRLPRTQKRFYGVMLQLLQKLSITAAGKR
Sbjct: 121 AIFDSRIAKAGRLKAVYVKTEKGLLIEVKPYVRLPRTQKRFYGVMLQLLQKLSITAAGKR 180

Query: 223 EKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVDLVFVVGAMAHGKIE 282
           EKLFRVIKNPVTQYLPAN RKMGFSHSSDKLVK+RNYLDAV+DDVDLVFVVGAMAHGKIE
Sbjct: 181 EKLFRVIKNPVTQYLPANSRKMGFSHSSDKLVKMRNYLDAVEDDVDLVFVVGAMAHGKIE 240

Query: 283 TDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG 317
           TDYTDDLLAISEYPLSASCCIADICKDLAEKWN+G
Sbjct: 241 TDYTDDLLAISEYPLSASCCIADICKDLAEKWNIG 275

[Close]

BLAST of Cucsat.G12684 vs. NCBI nr
Match: KAG7017643.1 (Ribosomal RNA small subunit methyltransferase NEP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 493 bits (1269), Expect = 4.57e-174
Identity = 252/279 (90.32%), Postives = 267/279 (95.70%), Query Frame = 0


Query: 43  MVRPFAAKGKKRKKSEKYDRDEDAEESTSPSKKVMLENEPDEEP----AKEDFHELEGIP 102
           MVRPFAAKGKKRKK+E+YDRD+D EEST+ +KK M+ENEPDE+P    A+E+FHELEGIP
Sbjct: 1   MVRPFAAKGKKRKKTERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIP 60

Query: 103 IAPKDPKNDSNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILH 162
           I PKDPK+DS AGVIF+LERASLEVAKVGKNYQLLNSDDHSN+LRRNNRNPGDYRPDILH
Sbjct: 61  IVPKDPKSDSKAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDILH 120

Query: 163 QALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITA 222
           QALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITA
Sbjct: 121 QALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITA 180

Query: 223 AGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVDLVFVVGAMAH 282
           AGKREKLFRVIKNPVTQYLP+N RKMGFSHSSDKLVKVR YLDAV+DDVDLVFVVGAMAH
Sbjct: 181 AGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAH 240

Query: 283 GKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG 317
           GKIET YTDDLLAISEYPLSASCCIADICKDLA+KWNVG
Sbjct: 241 GKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNVG 279

[Close]

BLAST of Cucsat.G12684 vs. NCBI nr
Match: XP_022935622.1 (ribosomal RNA small subunit methyltransferase nep-1 [Cucurbita moschata] >KAG6580885.1 Ribosomal RNA small subunit methyltransferase NEP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 493 bits (1269), Expect = 4.57e-174
Identity = 252/279 (90.32%), Postives = 267/279 (95.70%), Query Frame = 0


Query: 43  MVRPFAAKGKKRKKSEKYDRDEDAEESTSPSKKVMLENEPDEEP----AKEDFHELEGIP 102
           MVRPFAAKGKKRKK+E+YDRD+D EEST+ +KK M+ENEPDE+P    A+E+FHELEGIP
Sbjct: 1   MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIP 60

Query: 103 IAPKDPKNDSNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILH 162
           I PKDPK+DS AGVIF+LERASLEVAKVGKNYQLLNSDDHSN+LRRNNRNPGDYRPDILH
Sbjct: 61  IVPKDPKSDSKAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDILH 120

Query: 163 QALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITA 222
           QALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITA
Sbjct: 121 QALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITA 180

Query: 223 AGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVDLVFVVGAMAH 282
           AGKREKLFRVIKNPVTQYLP+N RKMGFSHSSDKLVKVR YLDAV+DDVDLVFVVGAMAH
Sbjct: 181 AGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAH 240

Query: 283 GKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG 317
           GKIET YTDDLLAISEYPLSASCCIADICKDLA+KWNVG
Sbjct: 241 GKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNVG 279

[Close]

BLAST of Cucsat.G12684 vs. ExPASy TrEMBL
Match: A0A0A0LFI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821550 PE=3 SV=1)

HSP 1 Score: 596 bits (1537), Expect = 9.05e-215
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 0


Query: 11  MQKVSTTLQSIYSKGFSTKLRLPSRKFLLGRTMVRPFAAKGKKRKKSEKYDRDEDAEEST 70
           MQKVSTTLQSIYSKGFSTKLRLPSRKFLLGRTMVRPFAAKGKKRKKSEKYDRDEDAEEST
Sbjct: 1   MQKVSTTLQSIYSKGFSTKLRLPSRKFLLGRTMVRPFAAKGKKRKKSEKYDRDEDAEEST 60

Query: 71  SPSKKVMLENEPDEEPAKEDFHELEGIPIAPKDPKNDSNAGVIFILERASLEVAKVGKNY 130
           SPSKKVMLENEPDEEPAKEDFHELEGIPIAPKDPKNDSNAGVIFILERASLEVAKVGKNY
Sbjct: 61  SPSKKVMLENEPDEEPAKEDFHELEGIPIAPKDPKNDSNAGVIFILERASLEVAKVGKNY 120

Query: 131 QLLNSDDHSNYLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEI 190
           QLLNSDDHSNYLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEI
Sbjct: 121 QLLNSDDHSNYLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEI 180

Query: 191 KPYVRLPRTQKRFYGVMLQLLQKLSITAAGKREKLFRVIKNPVTQYLPANCRKMGFSHSS 250
           KPYVRLPRTQKRFYGVMLQLLQKLSITAAGKREKLFRVIKNPVTQYLPANCRKMGFSHSS
Sbjct: 181 KPYVRLPRTQKRFYGVMLQLLQKLSITAAGKREKLFRVIKNPVTQYLPANCRKMGFSHSS 240

Query: 251 DKLVKVRNYLDAVKDDVDLVFVVGAMAHGKIETDYTDDLLAISEYPLSASCCIADICKDL 310
           DKLVKVRNYLDAVKDDVDLVFVVGAMAHGKIETDYTDDLLAISEYPLSASCCIADICKDL
Sbjct: 241 DKLVKVRNYLDAVKDDVDLVFVVGAMAHGKIETDYTDDLLAISEYPLSASCCIADICKDL 300

Query: 311 AEKWNVG 317
           AEKWNVG
Sbjct: 301 AEKWNVG 307

[Close]

BLAST of Cucsat.G12684 vs. ExPASy TrEMBL
Match: A0A5D3DPQ6 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006800 PE=3 SV=1)

HSP 1 Score: 522 bits (1345), Expect = 5.05e-186
Identity = 265/275 (96.36%), Postives = 271/275 (98.55%), Query Frame = 0


Query: 43  MVRPFAAKGKKRKKSEKYDRDEDAEESTSPSKKVMLENEPDEEPAKEDFHELEGIPIAPK 102
           MVRPFAAKGKKRKK+EKYDRDED EES+SP+KKVM+ENEPDEEP KEDFHELEGIPI PK
Sbjct: 1   MVRPFAAKGKKRKKAEKYDRDEDGEESSSPAKKVMVENEPDEEPPKEDFHELEGIPIVPK 60

Query: 103 DPKNDSNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILHQALL 162
           DPK D+NAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILHQALL
Sbjct: 61  DPKTDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILHQALL 120

Query: 163 AIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITAAGKR 222
           AIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITAAGKR
Sbjct: 121 AIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITAAGKR 180

Query: 223 EKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVDLVFVVGAMAHGKIE 282
           EKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVK+RNYLDAVKDDVDLVFVVGAMAHGKIE
Sbjct: 181 EKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKMRNYLDAVKDDVDLVFVVGAMAHGKIE 240

Query: 283 TDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG 317
           TDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG
Sbjct: 241 TDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG 275

[Close]

BLAST of Cucsat.G12684 vs. ExPASy TrEMBL
Match: A0A1S3B7L0 (ribosomal RNA small subunit methyltransferase NEP1 OS=Cucumis melo OX=3656 GN=LOC103486891 PE=3 SV=1)

HSP 1 Score: 522 bits (1345), Expect = 5.05e-186
Identity = 265/275 (96.36%), Postives = 271/275 (98.55%), Query Frame = 0


Query: 43  MVRPFAAKGKKRKKSEKYDRDEDAEESTSPSKKVMLENEPDEEPAKEDFHELEGIPIAPK 102
           MVRPFAAKGKKRKK+EKYDRDED EES+SP+KKVM+ENEPDEEP KEDFHELEGIPI PK
Sbjct: 1   MVRPFAAKGKKRKKAEKYDRDEDGEESSSPAKKVMVENEPDEEPPKEDFHELEGIPIVPK 60

Query: 103 DPKNDSNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILHQALL 162
           DPK D+NAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILHQALL
Sbjct: 61  DPKTDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILHQALL 120

Query: 163 AIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITAAGKR 222
           AIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITAAGKR
Sbjct: 121 AIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITAAGKR 180

Query: 223 EKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVDLVFVVGAMAHGKIE 282
           EKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVK+RNYLDAVKDDVDLVFVVGAMAHGKIE
Sbjct: 181 EKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKMRNYLDAVKDDVDLVFVVGAMAHGKIE 240

Query: 283 TDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG 317
           TDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG
Sbjct: 241 TDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG 275

[Close]

BLAST of Cucsat.G12684 vs. ExPASy TrEMBL
Match: A0A6J1F634 (ribosomal RNA small subunit methyltransferase nep-1 OS=Cucurbita moschata OX=3662 GN=LOC111442430 PE=3 SV=1)

HSP 1 Score: 493 bits (1269), Expect = 2.21e-174
Identity = 252/279 (90.32%), Postives = 267/279 (95.70%), Query Frame = 0


Query: 43  MVRPFAAKGKKRKKSEKYDRDEDAEESTSPSKKVMLENEPDEEP----AKEDFHELEGIP 102
           MVRPFAAKGKKRKK+E+YDRD+D EEST+ +KK M+ENEPDE+P    A+E+FHELEGIP
Sbjct: 1   MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIP 60

Query: 103 IAPKDPKNDSNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILH 162
           I PKDPK+DS AGVIF+LERASLEVAKVGKNYQLLNSDDHSN+LRRNNRNPGDYRPDILH
Sbjct: 61  IVPKDPKSDSKAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDILH 120

Query: 163 QALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITA 222
           QALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITA
Sbjct: 121 QALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITA 180

Query: 223 AGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVDLVFVVGAMAH 282
           AGKREKLFRVIKNPVTQYLP+N RKMGFSHSSDKLVKVR YLDAV+DDVDLVFVVGAMAH
Sbjct: 181 AGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAH 240

Query: 283 GKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG 317
           GKIET YTDDLLAISEYPLSASCCIADICKDLA+KWNVG
Sbjct: 241 GKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNVG 279

[Close]

BLAST of Cucsat.G12684 vs. ExPASy TrEMBL
Match: A0A6J1J0G6 (ribosomal RNA small subunit methyltransferase nep-1 OS=Cucurbita maxima OX=3661 GN=LOC111482341 PE=3 SV=1)

HSP 1 Score: 491 bits (1263), Expect = 1.81e-173
Identity = 251/279 (89.96%), Postives = 266/279 (95.34%), Query Frame = 0


Query: 43  MVRPFAAKGKKRKKSEKYDRDEDAEESTSPSKKVMLENEPDEEP----AKEDFHELEGIP 102
           MVRPFAAKGKKRKK+E+YDRD+D EES + +KK M+ENEPDE+P    A+E+FHELEGIP
Sbjct: 1   MVRPFAAKGKKRKKTERYDRDDDGEESIASAKKAMVENEPDEQPENEAAEENFHELEGIP 60

Query: 103 IAPKDPKNDSNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDILH 162
           I PKDPK+DS AGVIF+LERASLEVAKVGKNYQLLNSDDHSN+LRRNNRNPGDYRPDILH
Sbjct: 61  IVPKDPKSDSKAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDILH 120

Query: 163 QALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITA 222
           QALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITA
Sbjct: 121 QALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSITA 180

Query: 223 AGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVDLVFVVGAMAH 282
           AGKREKLFRVIKNPVTQYLP+N RKMGFSHSSDKLVKVR YLDAV+DDVDLVFVVGAMAH
Sbjct: 181 AGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAH 240

Query: 283 GKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG 317
           GKIET YTDDLLAISEYPLSASCCIADICKDLA+KWNVG
Sbjct: 241 GKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNVG 279

The following BLAST results are available for this feature:

BLAST of Cucsat.G12684 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O35130	1.2e-47	47.80	Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus OX=10090 GN=E...	[more]
Q92979	5.8e-47	43.98	Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens OX=9606 GN=EM...	[more]
Q9W4J5	1.7e-46	44.91	Ribosomal RNA small subunit methyltransferase NEP1 OS=Drosophila melanogaster OX...	[more]
Q06287	4.2e-45	43.04	Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces cerevisiae (...	[more]
Q9XX15	7.1e-45	47.03	Ribosomal RNA small subunit methyltransferase nep-1 OS=Caenorhabditis elegans OX...	[more]

BLAST of Cucsat.G12684 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136640.2	1.69e-191	100.00	ribosomal RNA small subunit methyltransferase nep-1 [Cucumis sativus] >KAE865118...	[more]
XP_008443268.1	1.04e-185	96.36	PREDICTED: ribosomal RNA small subunit methyltransferase NEP1 [Cucumis melo] >KA...	[more]
XP_038905075.1	4.13e-176	91.64	ribosomal RNA small subunit methyltransferase nep-1 [Benincasa hispida]	[more]
KAG7017643.1	4.57e-174	90.32	Ribosomal RNA small subunit methyltransferase NEP1, partial [Cucurbita argyrospe...	[more]
XP_022935622.1	4.57e-174	90.32	ribosomal RNA small subunit methyltransferase nep-1 [Cucurbita moschata] >KAG658...	[more]

BLAST of Cucsat.G12684 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFI3	9.05e-215	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821550 PE=3 SV=1	[more]
A0A5D3DPQ6	5.05e-186	96.36	Ribosomal RNA small subunit methyltransferase NEP1 OS=Cucumis melo var. makuwa O...	[more]
A0A1S3B7L0	5.05e-186	96.36	ribosomal RNA small subunit methyltransferase NEP1 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1F634	2.21e-174	90.32	ribosomal RNA small subunit methyltransferase nep-1 OS=Cucurbita moschata OX=366...	[more]
A0A6J1J0G6	1.81e-173	89.96	ribosomal RNA small subunit methyltransferase nep-1 OS=Cucurbita maxima OX=3661 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005304	Ribosomal biogenesis, methyltransferase, EMG1/NEP1	PFAM	PF03587	EMG1	coord: 90..265 e-value: 5.2E-59 score: 199.3
IPR005304	Ribosomal biogenesis, methyltransferase, EMG1/NEP1	PANTHER	PTHR12636	NEP1/MRA1	coord: 26..265
IPR005304	Ribosomal biogenesis, methyltransferase, EMG1/NEP1	CDD	cd18088	Nep1-like	coord: 88..267 e-value: 1.57157E-85 score: 252.836
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	3.40.1280.10		coord: 88..273 e-value: 1.8E-71 score: 241.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..68
IPR029028	Alpha/beta knot methyltransferases	SUPERFAMILY	75217	alpha/beta knot	coord: 80..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G12684.T1	Cucsat.G12684.T1	mRNA
Cucsat.G12684.T2	Cucsat.G12684.T2	mRNA
Cucsat.G12684.T3	Cucsat.G12684.T3	mRNA
Cucsat.G12684.T4	Cucsat.G12684.T4	mRNA
Cucsat.G12684.T5	Cucsat.G12684.T5	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070475	rRNA base methylation
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0032040	small-subunit processome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0070037	rRNA (pseudouridine) methyltransferase activity