Cucsat.G12350 (gene) Cucumber (B10) v3

Overview
NameCucsat.G12350
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionCellulose synthase
Locationctg1837: 851572 .. 853431 (+)
RNA-Seq ExpressionCucsat.G12350
SyntenyCucsat.G12350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACGTGTCCTTCCAGAATCCCCCATCTCTTTTTCTTTTTTATTTAACCCTTCAAATTAAATACACACAAAAAGGAAAAGCTGTTTGATTCAGTGAAAACGAAATTGTTAAAATGGCTGTTGCTGAAGAACCCATTCTCTCTCGTTTGGACCGGCTGGATGTGATGGTGAGTTTAGTTACTTTTATTTTCAGCTCCAATGGTTAACTCATTTTTTTCTTTTTCTTTTTTTAATATGTTCTTGGTGTGGTGTACTAGACAAGGTGGGGGAAAACGATGGGGGTTTTGCTGTTTGTTTCTCGGGGAATTGACTGGGAAAATTACAAGGGTTTGGTTGGTGAGAGATTCGTGGCTTAGCTACATGGGCTGTCTACTTCTTTTTCTTTCATTATTTTAAAATATTATGATTCGCTTTGTAATTCTGATGTTGATGTTTTATTTCTTTCTATCTATTTATCTTTCGTTTTATTTCTAAATTATGGAGTACAATGGCTTCTTCTAATTTTTGGTCGGTGTAATTTTGAAAACGTCTATTTCAATCAATCTACTTTTTAAGAGTATGTATTGTTTTAAATGAAAGTTATAGTACCAAGTGAAGGACTTGAGAATATATATTAATTTCACACTAATTAACACAAATTCCAAATTAATAATTGTGCCATTTGATTTTTTTTAGTCCAAGTTTTTACGATGTTTATATGTACTTTAATTTGACAGCAAAGCCATTGATGGGTAAGCAAGGAAGAATTATATTAGTTCAATTGAGTTGCATATTAACTATATATTTTTTAAGGTTAATGTTTGATTATTTGGTTTTATGCTTGAGATTATTATTATAATTTAATTTATACATGATTCATCTTACAATTTGACTATTTTCTCCTTTATTATAAAATTAAGCAAAAAAAAATATTAATATCATAAGGTGCATAATTTCACCGACTACAAATTTAAGTATCCTCTCGAGTAGAGGAAAATTGGAAATAATTGGGTTTATATATATATATATAAATGTTATTATGAACGAAATAATAAAGAAATATAAATGTTTGTTGTAATAGTTGAGGCGGCTGGAGGAAATTAGAGGGTGCGGTAAGTCTCCAAAAAGTTCGTGTGCATCCACTCCATCAAGTGGGACCCTAACGAGCGACTATCACACATCGTCCGTTGATCTGTCCCCAAAAAGCCTGGAGAAGCACTGTCGTCCGATCAACCACGTCGTCAAAGTCGCTGAACTCAAAGGAAGCCTCGTTGAGAGAATGGATAATCTCGAGGATAGAGTCCTCAAGGTAGAAAAAATAATTAATTATTAGAATATTGTTGATAGATTTATGCATTAATTCATTCATATTGCTATGCTGTTAATACTCTCTTCTGACATGGAGTGGAACTTTTTGAAACAGCTTTGTATACAAGTAGAGGGAGATTTAGAAAGGGAGAAGGATATGATAATGGTCGAGAAGAAGGAGAGGAAACCCAAGAGAAGCTTTAAACAACTTGTTCAACGGTGCATGACTGGGCAGGGAACAAGACGCGACTCGTGGTCTTGATCTTGACCATGTTTGTTTATTCGTTTTTCTTGTTTGTAGGACTTAATTTTCTTTTTAGTACGTAATTTCTTGAGTTGCTAAAGTTAATTATGTTTTTGTTCCTCTTAACCACTTGTACAACCTTTTAGGTCTCTTGTTGAAGATGTTTATAAAATTTTGTTGGGCAGTATATGTGGCACATCCATCATTTTCTTTTTTTCACTTTTGAGATGTGGATGAAGATGAAAAAGCTGCTTTAATTTGAGGGAGGACTGGTATTGTGAGTTTCCTTACATTGAATGACTTTTTAATCAACTGTTGATATTTCTTTTT

Coding sequence (CDS)

ATGGCTGTTGCTGAAGAACCCATTCTCTCTCGTTTGGACCGGCTGGATGTGATGTTGAGGCGGCTGGAGGAAATTAGAGGGTGCGGTAAGTCTCCAAAAAGTTCGTGTGCATCCACTCCATCAAGTGGGACCCTAACGAGCGACTATCACACATCGTCCGTTGATCTGTCCCCAAAAAGCCTGGAGAAGCACTGTCGTCCGATCAACCACGTCGTCAAAGTCGCTGAACTCAAAGGAAGCCTCGTTGAGAGAATGGATAATCTCGAGGATAGAGTCCTCAAGCTTTGTATACAAGTAGAGGGAGATTTAGAAAGGGAGAAGGATATGATAATGGTCGAGAAGAAGGAGAGGAAACCCAAGAGAAGCTTTAAACAACTTGTTCAACGGTGCATGACTGGGCAGGGAACAAGACGCGACTCGTGGTCTTGA

Protein sequence

MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPKRSFKQLVQRCMTGQGTRRDSWS
Homology
[Close]
BLAST of Cucsat.G12350 vs. NCBI nr
Match: XP_004151057.1 (uncharacterized protein LOC101205386 [Cucumis sativus] >KGN58589.1 hypothetical protein Csa_001276 [Cucumis sativus])

HSP 1 Score: 278 bits (710), Expect = 4.96e-94
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60
           MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS
Sbjct: 1   MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60

Query: 61  LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPK 120
           LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPK
Sbjct: 61  LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPK 120

Query: 121 RSFKQLVQRCMTGQGTRRDSWS 142
           RSFKQLVQRCMTGQGTRRDSWS
Sbjct: 121 RSFKQLVQRCMTGQGTRRDSWS 142

[Close]
BLAST of Cucsat.G12350 vs. NCBI nr
Match: XP_008461800.1 (PREDICTED: uncharacterized protein LOC103500315 [Cucumis melo] >KAA0048356.1 uncharacterized protein E6C27_scaffold264G00740 [Cucumis melo var. makuwa])

HSP 1 Score: 254 bits (649), Expect = 1.03e-84
Identity = 129/143 (90.21%), Postives = 139/143 (97.20%), Query Frame = 0 

Query: 1   MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60
           MAVAEEPILSRLDRLD MLRRLEEI+GC KSPKSSCASTPSSGTLTSDYHTSSVDLSPKS
Sbjct: 1   MAVAEEPILSRLDRLDNMLRRLEEIKGCAKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60

Query: 61  LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVE-KKERKP 120
           LEKHCRPINHVV+VAELKGSLVERMDNLEDRVLKLCIQVEG++EREKDM+MV+ KK++KP
Sbjct: 61  LEKHCRPINHVVRVAELKGSLVERMDNLEDRVLKLCIQVEGEMEREKDMVMVDQKKKKKP 120

Query: 121 KRSFKQLVQRCMTGQGTRRDSWS 142
           K+SFKQLVQ+CMTGQGT RDSWS
Sbjct: 121 KKSFKQLVQQCMTGQGTTRDSWS 143

[Close]
BLAST of Cucsat.G12350 vs. NCBI nr
Match: XP_038905600.1 (uncharacterized protein LOC120091575 [Benincasa hispida])

HSP 1 Score: 237 bits (604), Expect = 6.32e-78
Identity = 120/138 (86.96%), Postives = 132/138 (95.65%), Query Frame = 0 

Query: 1   MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60
           MAV EEPILSRLDRLD MLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPK 
Sbjct: 1   MAVGEEPILSRLDRLDNMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKC 60

Query: 61  LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPK 120
           LEKHCRPINHV+KVAELKGSLVERMDNLEDRVLKLC+QVEG++ERE++M++VEK  +K K
Sbjct: 61  LEKHCRPINHVIKVAELKGSLVERMDNLEDRVLKLCVQVEGEIEREREMMIVEKN-KKHK 120

Query: 121 RSFKQLVQRCMTGQGTRR 138
           +SFKQLVQ+CMTGQGTR+
Sbjct: 121 KSFKQLVQQCMTGQGTRK 137

[Close]
BLAST of Cucsat.G12350 vs. NCBI nr
Match: KAG6606879.1 (hypothetical protein SDJN03_00221, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 232 bits (592), Expect = 4.88e-76
Identity = 117/138 (84.78%), Postives = 130/138 (94.20%), Query Frame = 0 

Query: 1   MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60
           M VAEEPILSRL+RLD MLRRLEEIRGCGKSPKSSCASTPSSGTLTSDY TSSVDLSPK+
Sbjct: 1   MGVAEEPILSRLERLDNMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYQTSSVDLSPKT 60

Query: 61  LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPK 120
           LEKHCRPINHVVKV EL+GSLVERMDN+EDRVLKLC+Q+EG++EREK+MIMVEK ++KPK
Sbjct: 61  LEKHCRPINHVVKVTELRGSLVERMDNIEDRVLKLCLQIEGEIEREKEMIMVEK-DKKPK 120

Query: 121 RSFKQLVQRCMTGQGTRR 138
           +SFKQL+Q C TGQG RR
Sbjct: 121 KSFKQLIQLCATGQGIRR 137

[Close]
BLAST of Cucsat.G12350 vs. NCBI nr
Match: XP_022949377.1 (uncharacterized protein LOC111452747 [Cucurbita moschata])

HSP 1 Score: 231 bits (588), Expect = 1.98e-75
Identity = 117/138 (84.78%), Postives = 129/138 (93.48%), Query Frame = 0 

Query: 1   MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60
           M VAEEPILSRL+RLD MLRRLEEIRGCGKSPKSSCASTPSSGTLTSDY TSSVDLSPK+
Sbjct: 1   MGVAEEPILSRLERLDNMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYQTSSVDLSPKT 60

Query: 61  LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPK 120
           LEKHCRPINHVVKV EL+GSLVERMDN+EDRVLKLC+Q+EG++EREK+MIMVEK +RKPK
Sbjct: 61  LEKHCRPINHVVKVTELRGSLVERMDNIEDRVLKLCLQIEGEIEREKEMIMVEK-DRKPK 120

Query: 121 RSFKQLVQRCMTGQGTRR 138
           +SFKQL+Q C  GQG RR
Sbjct: 121 KSFKQLIQLCPMGQGIRR 137

[Close]
BLAST of Cucsat.G12350 vs. ExPASy TrEMBL
Match: A0A0A0LCD9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G695850 PE=4 SV=1)

HSP 1 Score: 278 bits (710), Expect = 2.40e-94
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60
           MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS
Sbjct: 1   MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60

Query: 61  LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPK 120
           LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPK
Sbjct: 61  LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPK 120

Query: 121 RSFKQLVQRCMTGQGTRRDSWS 142
           RSFKQLVQRCMTGQGTRRDSWS
Sbjct: 121 RSFKQLVQRCMTGQGTRRDSWS 142

[Close]
BLAST of Cucsat.G12350 vs. ExPASy TrEMBL
Match: A0A5A7U299 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00740 PE=4 SV=1)

HSP 1 Score: 254 bits (649), Expect = 4.99e-85
Identity = 129/143 (90.21%), Postives = 139/143 (97.20%), Query Frame = 0 

Query: 1   MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60
           MAVAEEPILSRLDRLD MLRRLEEI+GC KSPKSSCASTPSSGTLTSDYHTSSVDLSPKS
Sbjct: 1   MAVAEEPILSRLDRLDNMLRRLEEIKGCAKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60

Query: 61  LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVE-KKERKP 120
           LEKHCRPINHVV+VAELKGSLVERMDNLEDRVLKLCIQVEG++EREKDM+MV+ KK++KP
Sbjct: 61  LEKHCRPINHVVRVAELKGSLVERMDNLEDRVLKLCIQVEGEMEREKDMVMVDQKKKKKP 120

Query: 121 KRSFKQLVQRCMTGQGTRRDSWS 142
           K+SFKQLVQ+CMTGQGT RDSWS
Sbjct: 121 KKSFKQLVQQCMTGQGTTRDSWS 143

[Close]
BLAST of Cucsat.G12350 vs. ExPASy TrEMBL
Match: A0A1S3CFF4 (uncharacterized protein LOC103500315 OS=Cucumis melo OX=3656 GN=LOC103500315 PE=4 SV=1)

HSP 1 Score: 254 bits (649), Expect = 4.99e-85
Identity = 129/143 (90.21%), Postives = 139/143 (97.20%), Query Frame = 0 

Query: 1   MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60
           MAVAEEPILSRLDRLD MLRRLEEI+GC KSPKSSCASTPSSGTLTSDYHTSSVDLSPKS
Sbjct: 1   MAVAEEPILSRLDRLDNMLRRLEEIKGCAKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60

Query: 61  LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVE-KKERKP 120
           LEKHCRPINHVV+VAELKGSLVERMDNLEDRVLKLCIQVEG++EREKDM+MV+ KK++KP
Sbjct: 61  LEKHCRPINHVVRVAELKGSLVERMDNLEDRVLKLCIQVEGEMEREKDMVMVDQKKKKKP 120

Query: 121 KRSFKQLVQRCMTGQGTRRDSWS 142
           K+SFKQLVQ+CMTGQGT RDSWS
Sbjct: 121 KKSFKQLVQQCMTGQGTTRDSWS 143

[Close]
BLAST of Cucsat.G12350 vs. ExPASy TrEMBL
Match: A0A6J1GBV3 (uncharacterized protein LOC111452747 OS=Cucurbita moschata OX=3662 GN=LOC111452747 PE=4 SV=1)

HSP 1 Score: 231 bits (588), Expect = 9.61e-76
Identity = 117/138 (84.78%), Postives = 129/138 (93.48%), Query Frame = 0 

Query: 1   MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60
           M VAEEPILSRL+RLD MLRRLEEIRGCGKSPKSSCASTPSSGTLTSDY TSSVDLSPK+
Sbjct: 1   MGVAEEPILSRLERLDNMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYQTSSVDLSPKT 60

Query: 61  LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPK 120
           LEKHCRPINHVVKV EL+GSLVERMDN+EDRVLKLC+Q+EG++EREK+MIMVEK +RKPK
Sbjct: 61  LEKHCRPINHVVKVTELRGSLVERMDNIEDRVLKLCLQIEGEIEREKEMIMVEK-DRKPK 120

Query: 121 RSFKQLVQRCMTGQGTRR 138
           +SFKQL+Q C  GQG RR
Sbjct: 121 KSFKQLIQLCPMGQGIRR 137

[Close]
BLAST of Cucsat.G12350 vs. ExPASy TrEMBL
Match: A0A6J1KAC7 (uncharacterized protein LOC111493115 OS=Cucurbita maxima OX=3661 GN=LOC111493115 PE=4 SV=1)

HSP 1 Score: 228 bits (582), Expect = 7.39e-75
Identity = 116/138 (84.06%), Postives = 129/138 (93.48%), Query Frame = 0 

Query: 1   MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60
           M VA+EPILSRL+RLD MLRRLEEIRGCGKSPKSSCASTPSSGTLTSDY TSSVDLSPK+
Sbjct: 1   MGVADEPILSRLERLDNMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYLTSSVDLSPKT 60

Query: 61  LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPK 120
           LEKHCRPINHVVKV EL+GSLVERMDN+EDRVLKLC+Q EG++E+EK+MIMVEK ++KPK
Sbjct: 61  LEKHCRPINHVVKVTELRGSLVERMDNIEDRVLKLCLQTEGEIEKEKEMIMVEK-DKKPK 120

Query: 121 RSFKQLVQRCMTGQGTRR 138
           +SFKQLVQ CMTGQG  R
Sbjct: 121 KSFKQLVQLCMTGQGIHR 137

The following BLAST results are available for this feature:
BLAST of Cucsat.G12350 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G12350 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004151057.14.96e-94100.00uncharacterized protein LOC101205386 [Cucumis sativus] >KGN58589.1 hypothetical ... [more]
XP_008461800.11.03e-8490.21PREDICTED: uncharacterized protein LOC103500315 [Cucumis melo] >KAA0048356.1 unc... [more]
XP_038905600.16.32e-7886.96uncharacterized protein LOC120091575 [Benincasa hispida][more]
KAG6606879.14.88e-7684.78hypothetical protein SDJN03_00221, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022949377.11.98e-7584.78uncharacterized protein LOC111452747 [Cucurbita moschata][more]
BLAST of Cucsat.G12350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCD92.40e-94100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G695850 PE=4 SV=1[more]
A0A5A7U2994.99e-8590.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3CFF44.99e-8590.21uncharacterized protein LOC103500315 OS=Cucumis melo OX=3656 GN=LOC103500315 PE=... [more]
A0A6J1GBV39.61e-7684.78uncharacterized protein LOC111452747 OS=Cucurbita moschata OX=3662 GN=LOC1114527... [more]
A0A6J1KAC77.39e-7584.06uncharacterized protein LOC111493115 OS=Cucurbita maxima OX=3661 GN=LOC111493115... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..54
NoneNo IPR availablePANTHERPTHR34190:SF4EXPRESSED PROTEINcoord: 1..139
NoneNo IPR availablePANTHERPTHR34190EXPRESSED PROTEINcoord: 1..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G12350.T1Cucsat.G12350.T1mRNA