Cucsat.G12346 (gene) Cucumber (B10) v3

Overview
NameCucsat.G12346
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionRibosomal protein
Locationctg1837: 728978 .. 731856 (+)
RNA-Seq ExpressionCucsat.G12346
SyntenyCucsat.G12346
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAAAAAAAAAAGAGTTAAAATGGTTGAATTTACAAGTTAAAGAAAAAGAGGCAAAATTAATGGCCACAAAAATTCCAACAATCCAATCGAACAAATTGGCCCCATTTCTACCTCTTATCATCTCCACAATGTATGGATAGAGAGACCCATTTCCAAATCCAAATCCAAAACCCCAACTTCATGCGGTAGAAGAAGAAGAACATCCCAACTTCACTCTCCATCAATGGCAGCCTGTACTTCCACTCCTCCTTCTTCCCTAATGCTCACTTCTGCTTCTTCTTCTGTACATCCCCCCCAAGACCTAGCTTCCTCTCTCGTTTCTTTCAAGGCCAAACTACAAATTTCCACCATCAAATCCTTCTCTTCTTCTAACTTCCTCTGCAGATCTAGGAGATCACCCGATTGGGTATTTCTTAATTTTCAGAGACGAGCGAGGCAGCATGTGATCGTTGCAGCTTTTGCCGCTGAAGCGAATGTCGCCGAGGTGGAAGCCGAGGAAGAGGAAGGGGTGGCCGCGGCGCCGACGGCTACTGCGCCTAAACCTAAGAAGGGGAAAGCCGCCTTGCCCCTTAAAAGAGATAGGGTATGTTCCAAAATCTTTTTCATGGCTACTCTTCGATTTGTTTTTCGATTTGGGTATGGTGATTGGGTTGTGGGTCGTGTTCTATTTCATGGGTTGTGCTTGGAGGAGCTTGTTTTTCAAGCTTAGAAATGGAGGGTGTTTAATGATCATTTCGGTGGTCTATTGGCTTCATTTTCTTTGGTTTTCCATGTCGTTATTTCATTGTTGATGTCTGAATTCAATTTGTTGCATGATATGTCAGAGGAGATCAAAGAGATTCTTGGAAATTCAAAAACTGAGGGAAAACAAAAAAGAGTATGACCTCACGACAGCAATATCTCTGCTCAAGGAAATGAGTAGCACGAAGTTTATAGAATCAGCTGAAGCTCATTTCCGGCTCAACATTGATCCCAAATACAATGATCAACAGCTGAGAGCAACTGTGAGTTTTGTTTTATGATCCATTTACTGTTGAGGGAAGTTGTAACTTACAAAGAATATGGATATCATTACGTTATTTTGCTTTAATGCTTTTATGCAGGTAAATTTGCCTAAAGGAACTGGCCAAACTGTAAAAGTAGCTGTTCTTACTCAAGGTAGTTACTAGTTACTTTTAATACTTGATGGACTCTATCTCTCTCAAACTATGCTATGTTCTTACATTTTAACTAAATCCACCAAGTGGAGTCTCTGTCTGTGGCTAAAGCCTTGTTTGAGAGTTGGGTTTGAAACAGTTTTATGTTTTTTTAACAATAAGTAGTGTAAATGTGTTCCAATAACTATTTCCAAAACTTTTTTTTTCTTTACACTGATGACTTGATTTTTTTCAAATAAATGAAAAATCAATCACGAATAAAACTAATCTGTACGTTCCCTTTGATCACTGTTCTTAAAAATAGTTTTATGATCAAGAAACTTTTTGGAGTTATCTTCATGGTGAATTCTAAGCTAAGTTTGGGATGATTGTACCATAATTTGAAGTTCGCACCCTCGAGTTGAGGCCCCCATGAATCTAGACTAGGGTAAAGTTCAGTCTTGTGGCCTTTGATCTTGGTCGAACTGAATTTTATGTTTTTATACATTTAGATTCCTTTATGCATAATTTGAAGGTTGCACCCTCGAATTCGGCCCTAGGAGTAAAGTTGGAACGATGAGTTGTTAACCCCGCTATTTGTTTAGCCCAAGGTGTTCATGGGGCCCACAGCTAAAAGATATCAATTTCATGACTTATTAACTCCTTATAGGCCACATGCCTAAACAATTTCGCAGACTACATAACTCAGCTCTGTGCCCCAATAGTTGCTTGTTAAAAGGATTTTACTGTTTAGGGTGTGATCCTAAAAAGTTCAAAGAAATACACAGGTGAGAGATTCGATGAAGCAAAAAATGCTGGAGCAGATTTGGTTGGTGGGGAGGACTTAATAGAACAGATAAAAGGAGGATTTATGGATTTTGACAAATTGATTGCTTCCCCAGATATGATGCCTAAGGTATTCCTCAGACTGCTTTACTTCAATCGTTATTTCAATTATTTTATCATTGATGTCAATTACTGATTACCTGTATTACAAAGAGTAATAAAACAATATACTTGATTTTCATATTTTAAGTCTTCTCTGCTCATGTCAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGGGGCCTGATGCCTAATCCAAAAGCCGGTACTGTGGCGACCAATTTGCCTCAGGTATCAATGATCTTCTTCCTGTACCTGCATTACATCCAGATTTCATATCTATTGATTAGAAAAATAAATTCAGAAATTTAGTTGAACCATTGGGCATCACTGATTTCAGGCAATAGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGTATAGTTCATTTACCATTTGGAAAAGCCAACTTCAGCGAAGAGGACCTTCTCATAAACTTGCTTGCTGCCATAGTATGTTCTTGCCTTCTCTCTGTAGCTGTTAGTCTCTAGAGAACAGGTCTCACTCATTTTTTATAAATCATTTTCTTCCAACTCTGACAGAAATCAATAGAAACCAATAAGCCATCAGGTGCAAAAGGTGTATACTGGAGAAGTGCTCACATATGCTCGTCGATGGGGCCTTCAATTCGGTTAAATATAAGGGATATGCTGGACTTCAAACTTCCCTCGAGCGCTTGACGAATAACAGACCTGTAAATTCCTTCTGTTTGTTGAATCAGCCTCAGGTGGACCCACTGGGTTATAATGATGCCCAAATGTGAGCAGCATTGGAACCACTATGATAGAAGAAACTAGGAAGAAGAGCGAGGAGACATCAGATAATTATGATTACACAGCAACAGGCAATACTGCATAGTCTTCTATACTGACTCACTTTGTATTGATGGTGTTAAGTTCATATCGATCTACTACACTTTGATTGACCTCTCTTGGGTTTTAAGGGGAAAAAATGATGAATGTACTGAATTGTATTGACCAGTTGCTGCTCTTTTCTGTGGCATATTTGGAAAGTGGTGGTTCTTGTTGGTTCTGTCATAAAGGGTCATTTGCAAATACAGTTCTATCGATCTAAGTTAATTTCATATTTTGACATGCAAATATGGATGACACATGTGATCAAATTCTAAATTCTATTCTTGTTTACGTGCTTTCCATATGTAAATATGGACTTAGATCATCCCAAATTTTGATAAATCATATTCTCAGGCTTCTAGTTTTCTATTTTTGAGCCTTGAAACTTTCTTGCCGTCAAATATTGACTTCTCTCAATAATTTTACTATGGAACAACAAGCCCT

Coding sequence (CDS)

ATGGCAGCCTGTACTTCCACTCCTCCTTCTTCCCTAATGCTCACTTCTGCTTCTTCTTCTGTACATCCCCCCCAAGACCTAGCTTCCTCTCTCGTTTCTTTCAAGGCCAAACTACAAATTTCCACCATCAAATCCTTCTCTTCTTCTAACTTCCTCTGCAGATCTAGGAGATCACCCGATTGGGTATTTCTTAATTTTCAGAGACGAGCGAGGCAGCATGTGATCGTTGCAGCTTTTGCCGCTGAAGCGAATGTCGCCGAGGTGGAAGCCGAGGAAGAGGAAGGGGTGGCCGCGGCGCCGACGGCTACTGCGCCTAAACCTAAGAAGGGGAAAGCCGCCTTGCCCCTTAAAAGAGATAGGAGGAGATCAAAGAGATTCTTGGAAATTCAAAAACTGAGGGAAAACAAAAAAGAGTATGACCTCACGACAGCAATATCTCTGCTCAAGGAAATGAGTAGCACGAAGTTTATAGAATCAGCTGAAGCTCATTTCCGGCTCAACATTGATCCCAAATACAATGATCAACAGCTGAGAGCAACTGTAAATTTGCCTAAAGGAACTGGCCAAACTGTAAAAGTAGCTGTTCTTACTCAAGGTGAGAGATTCGATGAAGCAAAAAATGCTGGAGCAGATTTGGTTGGTGGGGAGGACTTAATAGAACAGATAAAAGGAGGATTTATGGATTTTGACAAATTGATTGCTTCCCCAGATATGATGCCTAAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGGGGCCTGATGCCTAATCCAAAAGCCGGTACTGTGGCGACCAATTTGCCTCAGGCAATAGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGTATAGTTCATTTACCATTTGGAAAAGCCAACTTCAGCGAAGAGGACCTTCTCATAAACTTGCTTGCTGCCATAGTATGTTCTTGCCTTCTCTCTGTAGCTGTTAGTCTCTAG

Protein sequence

MAACTSTPPSSLMLTSASSSVHPPQDLASSLVSFKAKLQISTIKSFSSSNFLCRSRRSPDWVFLNFQRRARQHVIVAAFAAEANVAEVEAEEEEGVAAAPTATAPKPKKGKAALPLKRDRRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFIESAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSEEDLLINLLAAIVCSCLLSVAVSL
Homology
[Close]
BLAST of Cucsat.G12346 vs. ExPASy Swiss-Prot
Match: Q9LY66 (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 6.0e-59
Identity = 105/129 (81.40%), Postives = 120/129 (93.02%), Query Frame = 0 

Query: 1   MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 60
           M+FDKLIASPDMM KVA LGK+LGPRGLMPNPKAGTV  N+PQAI EFK+GKVE+RADKT
Sbjct: 217 MEFDKLIASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKT 276

Query: 61  GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRD 120
           GIVH+PFGK NF+EEDLLIN LAA+KS+ETNKP GAKGVYW+SAHICSSMGPSI+LNIR+
Sbjct: 277 GIVHIPFGKVNFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIRE 336

Query: 121 MLDFKLPSS 130
           M+DFK P++
Sbjct: 337 MIDFKPPTA 345

[Close]
BLAST of Cucsat.G12346 vs. ExPASy Swiss-Prot
Match: Q9LE95 (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.8e-55
Identity = 102/130 (78.46%), Postives = 116/130 (89.23%), Query Frame = 0 

Query: 1   MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 60
           MDFDKLIA+ DMM KVASLG++LGPRGLMP PKAGTV  N+ QA+ EFK+GKVE+R DKT
Sbjct: 223 MDFDKLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKT 282

Query: 61  GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRD 120
           GIVH+PFGK NF EEDLLINL A IKS+ETNKP+GAKGVYW+SAHI SSMGPSIRLNIR+
Sbjct: 283 GIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIRE 342

Query: 121 MLDFKLPSSA 131
           MLD+K PS+A
Sbjct: 343 MLDYKPPSNA 352

[Close]
BLAST of Cucsat.G12346 vs. ExPASy Swiss-Prot
Match: Q8DM27 (50S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rplA PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.2e-44
Identity = 83/130 (63.85%), Postives = 109/130 (83.85%), Query Frame = 0 

Query: 1   MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 60
           MDFD LIA+PDMMP+VA +G++LGPRGLMP+PKAGTV  +LPQAI EFK GKVE+RAD++
Sbjct: 108 MDFDLLIATPDMMPQVAKVGRILGPRGLMPSPKAGTVTFDLPQAIQEFKAGKVEFRADRS 167

Query: 61  GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRD 120
           GIVH+ FGKA+FS EDLL+NL A  +SI+ N+PSGAKG YWRS ++ ++MGPSI+++I  
Sbjct: 168 GIVHVLFGKASFSAEDLLVNLKALQESIDRNRPSGAKGRYWRSVYVAATMGPSIQVDINA 227

Query: 121 MLDFKLPSSA 131
           + + KL  +A
Sbjct: 228 LRELKLAEAA 237

[Close]
BLAST of Cucsat.G12346 vs. ExPASy Swiss-Prot
Match: Q3MA18 (50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplA PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 5.5e-44
Identity = 82/130 (63.08%), Postives = 109/130 (83.85%), Query Frame = 0 

Query: 1   MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 60
           MDFDKLIA+PD+MP+VA LGK+LGPRGLMP+PK GTV  ++  AIAEFK GK+E+RAD+T
Sbjct: 109 MDFDKLIATPDVMPQVAKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRT 168

Query: 61  GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRD 120
           GIVH+ FGKA+FS EDLL+NL A  ++I+ N+PSGAKG YWR+ ++ ++MGPSIR++I  
Sbjct: 169 GIVHVMFGKASFSPEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINA 228

Query: 121 MLDFKLPSSA 131
           + D+KL  +A
Sbjct: 229 LRDYKLTEAA 238

[Close]
BLAST of Cucsat.G12346 vs. ExPASy Swiss-Prot
Match: Q8YLJ7 (50S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rplA PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 7.2e-44
Identity = 82/130 (63.08%), Postives = 109/130 (83.85%), Query Frame = 0 

Query: 1   MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 60
           MDFDKLIA+PD+MP+VA LGK+LGPRGLMP+PK GTV  ++  AIAEFK GK+E+RAD+T
Sbjct: 109 MDFDKLIATPDVMPQVAKLGKMLGPRGLMPSPKGGTVTFDVASAIAEFKAGKLEFRADRT 168

Query: 61  GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRD 120
           GIVH+ FGKA+FS EDLL+NL A  ++I+ N+PSGAKG YWR+ ++ ++MGPSIR++I  
Sbjct: 169 GIVHVMFGKASFSPEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINA 228

Query: 121 MLDFKLPSSA 131
           + D+KL  +A
Sbjct: 229 LRDYKLTEAA 238

[Close]
BLAST of Cucsat.G12346 vs. NCBI nr
Match: XP_004149726.1 (50S ribosomal protein L1, chloroplastic [Cucumis sativus] >KGN58572.1 hypothetical protein Csa_001857 [Cucumis sativus])

HSP 1 Score: 259 bits (662), Expect = 6.90e-84
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 60
           MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT
Sbjct: 227 MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 286

Query: 61  GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRD 120
           GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRD
Sbjct: 287 GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRD 346

Query: 121 MLDFKLPSSA 130
           MLDFKLPSSA
Sbjct: 347 MLDFKLPSSA 356

[Close]
BLAST of Cucsat.G12346 vs. NCBI nr
Match: XP_008461822.1 (PREDICTED: 50S ribosomal protein L1, chloroplastic [Cucumis melo] >TYJ99869.1 50S ribosomal protein L1 [Cucumis melo var. makuwa])

HSP 1 Score: 258 bits (659), Expect = 1.97e-83
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 60
           MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT
Sbjct: 227 MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 286

Query: 61  GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRD 120
           GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYW+SAHICSSMGPSIRLNIRD
Sbjct: 287 GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRD 346

Query: 121 MLDFKLPSSA 130
           MLDFKLPSSA
Sbjct: 347 MLDFKLPSSA 356

[Close]
BLAST of Cucsat.G12346 vs. NCBI nr
Match: KAA0048392.1 (50S ribosomal protein L1 [Cucumis melo var. makuwa])

HSP 1 Score: 258 bits (659), Expect = 2.03e-83
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 60
           MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT
Sbjct: 228 MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 287

Query: 61  GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRD 120
           GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYW+SAHICSSMGPSIRLNIRD
Sbjct: 288 GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRD 347

Query: 121 MLDFKLPSSA 130
           MLDFKLPSSA
Sbjct: 348 MLDFKLPSSA 357

[Close]
BLAST of Cucsat.G12346 vs. NCBI nr
Match: XP_038905945.1 (50S ribosomal protein L1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 254 bits (650), Expect = 3.89e-82
Identity = 127/130 (97.69%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 60
           MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT
Sbjct: 222 MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 281

Query: 61  GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRD 120
           GIVHLPFGKA+FSEEDLLINLLAAIKSIETNKPSGAKGVYW+SAHICSSMGPSIRLNIR+
Sbjct: 282 GIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRE 341

Query: 121 MLDFKLPSSA 130
           MLDFKLPSSA
Sbjct: 342 MLDFKLPSSA 351

[Close]
BLAST of Cucsat.G12346 vs. NCBI nr
Match: XP_022152718.1 (LOW QUALITY PROTEIN: 50S ribosomal protein L1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 253 bits (645), Expect = 2.92e-81
Identity = 125/130 (96.15%), Postives = 129/130 (99.23%), Query Frame = 0 

Query: 1   MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 60
           MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT
Sbjct: 231 MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 290

Query: 61  GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRD 120
           GIVHLPFGKA+FSEEDLLINLLAAIKS+ETNKPSGAKGVYW+S HICSSMGPSIRLNIR+
Sbjct: 291 GIVHLPFGKADFSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIRE 350

Query: 121 MLDFKLPSSA 130
           MLDFKLPSSA
Sbjct: 351 MLDFKLPSSA 360

[Close]
BLAST of Cucsat.G12346 vs. ExPASy TrEMBL
Match: A0A0A0LD08 (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_3G687730 PE=3 SV=1)

HSP 1 Score: 259 bits (662), Expect = 3.34e-84
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 60
           MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT
Sbjct: 227 MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 286

Query: 61  GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRD 120
           GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRD
Sbjct: 287 GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRD 346

Query: 121 MLDFKLPSSA 130
           MLDFKLPSSA
Sbjct: 347 MLDFKLPSSA 356

[Close]
BLAST of Cucsat.G12346 vs. ExPASy TrEMBL
Match: A0A5D3BLK6 (Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00110 PE=3 SV=1)

HSP 1 Score: 258 bits (659), Expect = 9.51e-84
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 60
           MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT
Sbjct: 227 MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 286

Query: 61  GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRD 120
           GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYW+SAHICSSMGPSIRLNIRD
Sbjct: 287 GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRD 346

Query: 121 MLDFKLPSSA 130
           MLDFKLPSSA
Sbjct: 347 MLDFKLPSSA 356

[Close]
BLAST of Cucsat.G12346 vs. ExPASy TrEMBL
Match: A0A1S3CFH3 (Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500332 PE=3 SV=1)

HSP 1 Score: 258 bits (659), Expect = 9.51e-84
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 60
           MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT
Sbjct: 227 MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 286

Query: 61  GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRD 120
           GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYW+SAHICSSMGPSIRLNIRD
Sbjct: 287 GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRD 346

Query: 121 MLDFKLPSSA 130
           MLDFKLPSSA
Sbjct: 347 MLDFKLPSSA 356

[Close]
BLAST of Cucsat.G12346 vs. ExPASy TrEMBL
Match: A0A5A7TXX7 (Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001120 PE=3 SV=1)

HSP 1 Score: 258 bits (659), Expect = 9.81e-84
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 60
           MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT
Sbjct: 228 MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 287

Query: 61  GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRD 120
           GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYW+SAHICSSMGPSIRLNIRD
Sbjct: 288 GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRD 347

Query: 121 MLDFKLPSSA 130
           MLDFKLPSSA
Sbjct: 348 MLDFKLPSSA 357

[Close]
BLAST of Cucsat.G12346 vs. ExPASy TrEMBL
Match: A0A6J1DFM3 (Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020374 PE=3 SV=1)

HSP 1 Score: 253 bits (645), Expect = 1.41e-81
Identity = 125/130 (96.15%), Postives = 129/130 (99.23%), Query Frame = 0 

Query: 1   MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 60
           MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT
Sbjct: 231 MDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKT 290

Query: 61  GIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRD 120
           GIVHLPFGKA+FSEEDLLINLLAAIKS+ETNKPSGAKGVYW+S HICSSMGPSIRLNIR+
Sbjct: 291 GIVHLPFGKADFSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIRE 350

Query: 121 MLDFKLPSSA 130
           MLDFKLPSSA
Sbjct: 351 MLDFKLPSSA 360

The following BLAST results are available for this feature:
BLAST of Cucsat.G12346 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LY666.0e-5981.4050S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 ... [more]
Q9LE951.8e-5578.4650S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=... [more]
Q8DM274.2e-4463.8550S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) OX=19722... [more]
Q3MA185.5e-4463.0850S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937)... [more]
Q8YLJ77.2e-4463.0850S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)... [more]
BLAST of Cucsat.G12346 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004149726.16.90e-84100.0050S ribosomal protein L1, chloroplastic [Cucumis sativus] >KGN58572.1 hypothetic... [more]
XP_008461822.11.97e-8399.23PREDICTED: 50S ribosomal protein L1, chloroplastic [Cucumis melo] >TYJ99869.1 50... [more]
KAA0048392.12.03e-8399.2350S ribosomal protein L1 [Cucumis melo var. makuwa][more]
XP_038905945.13.89e-8297.6950S ribosomal protein L1, chloroplastic-like [Benincasa hispida][more]
XP_022152718.12.92e-8196.15LOW QUALITY PROTEIN: 50S ribosomal protein L1, chloroplastic-like [Momordica cha... [more]
BLAST of Cucsat.G12346 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LD083.34e-84100.00Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_3G687730 PE=3 SV=1[more]
A0A5D3BLK69.51e-8499.23Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00... [more]
A0A1S3CFH39.51e-8499.23Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500332 PE=3 SV=1[more]
A0A5A7TXX79.81e-8499.23Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00... [more]
A0A6J1DFM31.41e-8196.15Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020374 PE=3 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.190.20coord: 137..183
e-value: 7.8E-16
score: 59.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..115
IPR023674Ribosomal protein L1-likeSUPERFAMILY56808Ribosomal protein L1coord: 125..183

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G12346.T6Cucsat.G12346.T6mRNA
Cucsat.G12346.T7Cucsat.G12346.T7mRNA
Cucsat.G12346.T1Cucsat.G12346.T1mRNA
Cucsat.G12346.T2Cucsat.G12346.T2mRNA
Cucsat.G12346.T8Cucsat.G12346.T8mRNA
Cucsat.G12346.T5Cucsat.G12346.T5mRNA
Cucsat.G12346.T3Cucsat.G12346.T3mRNA
Cucsat.G12346.T9Cucsat.G12346.T9mRNA
Cucsat.G12346.T4Cucsat.G12346.T4mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000470 maturation of LSU-rRNA
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding