Cucsat.G12328 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G12328
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	60S ribosomal protein L44
Location	ctg1837: 166809 .. 168858 (+)
RNA-Seq Expression	Cucsat.G12328
Synteny	Cucsat.G12328

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACATATATATAACTATCGCTTCTCTTTTCAATTCCTACTTTGCCACTAAATTAGGGTTTCTGGAGCAGGCCTCGTCGACGTCCAGCCGTCATGGTACTTCTTCTTCCTTCTCCGTTTTTCTGGAATTTCAATCTCTCCTACTCCTTCTCTTGATTCCCTTTGTGTTCCACTTGCCTGATTTATTTCTCTATTTGTTTTATTTGGTTGCGTCAGTTAGTTCTGTGATGGAAGCTGGAGTTACGTGCCTTTTGTTTTTTCGTAGTATCACTTGATCTAGGACTGTGTTAGAAGCAAACTGGTTTATCTGTTGTACTCGAGCATAGTTTGGCTTAGTTAGCGAGGTGAGGACGTAAGTTCTTTGGGGCTAGTTGTAGCATAAGCCATCTAAATCATCTTGCAGCTTGTGGGTGATCATGTTGATTTGGAAGTATTTTTGTTGCATAGACTGTAAGAGAATGAATCAGGATTACTGATATTTGTAGCTGATGGAAACTGGGTCCTGGATTTAGGATATGCATGATTGCTGTATGGAGTGAAATCTGTAGTGTCACTGAACTCTTATTGTTTTTTTGGATAATAAACAGTTTCATTGATGTTTGAAATTATAAAAGGGGAACCCCGATAAGCGTAATTACAAAAGGCTTCTCCAATAAGAGTGGAAGGAGGAATAATTATAGTGATGGCACTGAACTTTGAACGCTTTAGTATTGAGTGGGATTGGGATGTTTCATCAAAAAATTGCTTAAAAGAAGAATTTTCACGAGGTAAACATTGCACGTGGAATGGATTATAAATTCTGGAGCTTCGGTTGTAGTAAGTCTGTGGAGAAATTTTAAACCATGGATTCAAAAGGCAGTGGTGGGATTGTAGTATCTGTGTGTTTTTGTCATTACAGCTTTGTATCGTTGTGGTTTAATATTTGCTTTGCTGATATGGTTATGGCAAACAGGTGAACGTTCCTAAGACCAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGGAAGCATACCTTGCACAAGGTTACACAATATAAGAAGGGAAAAGATAGTCTTGCTGCACAGGGAAAGCGTAGGTACGATCGCAAGCAATCAGGATATGGAGGTCAAACCAAGCCCGTGTTTCACAAGAAGGTTAGTTAATTTTCTCAAAATTCTTACTTTATCTTTCTCCGAGGTGCTATTTAGATTAGAACTGAATTGAAACTCTTGAATCTCACAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTTCAGTGCCAAGGTTGCAAACACGTATCCCAGCACCCTATCAAGGTTAGAATGCGAAGTATTTTGTTTTTTCTCCGTTTAAGACCTCTCTCAATTAAGTATCTTGATCATTTTGCGAAAAATCTTTCAAACATATAGAACCGTTCTCATACTATATAAGGTTGTTGGTTCAATTAGTGTTAATAATATTAATATGTTTCCTTCCCGTAAAGTAAATACCCATTGCTATATTAGTGAAGGAAGTTCATACTTGATACCTGGTTTTAAAGTCATGACCTTTGGGGTAGTATTGTTTTCTCCATTCCGGTACTTGAGTACAGTTTCGTAATGAGCATCGAATTGGTACATGGTGAGAAAATGATATTTGAAGTAATTATTTGCTCTTTAAGACAAATATGCAAATCCAAGTGAGAAGCCTAATTGTTAGATGTTATCTGGTGTGGATATTGTGCGGTTTCCTTATCATCATATGTCTTGATTGTCAATTGCAGAGATGCAAGCACTTCGAAATTGGTGGAGACAAGAAAGGGAAGGGAACTTCTCTTTTCTAGACCCTTTTATCAGTTTTTTATCTTTTGTCACAAAGATTATTTGTTTTTGGAGTTCTTGCAGAATTGCTTTGTTTTGTTCAGCAATTAGATCTACCTGTCGTAATGATACTTTTTAGCTGAAACTTTCTCATCTTAATTAATGAATTACCATAATTTTGATGCTCTTTGATTGATATATCGAGTCTTCTCATTAGTTTGTTTGCCCGGTCAGTACCTATCAAGTTAATTTGAATGATTGCTCAAATTTTGTATCTTCTAAATATCATTGATAACTCATAGTTGTAATACATATTTGAAGGGAAATTATCATTTTAAATATTTAATTCCCAATTTTTTCAGAATAGGTGTTTGATTCTTAAGTT

Coding sequence (CDS)

ATGGTGAACGTTCCTAAGACCAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGGAAGCATACCTTGCACAAGGTTACACAATATAAGAAGGGAAAAGATAGTCTTGCTGCACAGGGAAAGCGTAGGTACGATCGCAAGCAATCAGGATATGGAGGTCAAACCAAGCCCGTGTTTCACAAGAAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTTCAGTGCCAAGGTTGCAAACACGTATCCCAGCACCCTATCAAGGTTAGAATGCGAAGTATTTTGTTTTTTCTCCGTTTAAGACCTCTCTCAATTAAGTATCTTGATCATTTTGCGAAAAATCTTTCAAACATATAG

Protein sequence

MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKVRMRSILFFLRLRPLSIKYLDHFAKNLSNI

Homology

[Close]

BLAST of Cucsat.G12328 vs. ExPASy Swiss-Prot
Match: Q96499 (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 217.2 bits (552), Expect = 9.5e-56
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 13  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 72
           VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 73  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 117
           AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Cucsat.G12328 vs. ExPASy Swiss-Prot
Match: O23290 (60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3)

HSP 1 Score: 205.3 bits (521), Expect = 3.7e-52
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 13  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 72
           VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 73  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 117
           AKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Cucsat.G12328 vs. ExPASy Swiss-Prot
Match: O59870 (60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 172.9 bits (437), Expect = 2.1e-42
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 13  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 72
           VNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 73  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 116
           AKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG ++
Sbjct: 62  AKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104

[Close]

BLAST of Cucsat.G12328 vs. ExPASy Swiss-Prot
Match: P0CQ51 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.5e-42
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 13  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 72
           VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 73  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 116
           AKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct: 62  AKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

[Close]

BLAST of Cucsat.G12328 vs. ExPASy Swiss-Prot
Match: P0CQ50 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.5e-42
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 13  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 72
           VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 73  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 116
           AKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct: 62  AKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

[Close]

BLAST of Cucsat.G12328 vs. NCBI nr
Match: KAA0052770.1 (60S ribosomal protein L44-like [Cucumis melo var. makuwa] >TYK04186.1 60S ribosomal protein L44-like [Cucumis melo var. makuwa])

HSP 1 Score: 226 bits (575), Expect = 2.62e-74
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MDSKGSGGIVVSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSG 60
           MDS+GS GIVV  NVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSG
Sbjct: 1   MDSRGSTGIVV--NVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSG 60

Query: 61  YGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 116
           YGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  YGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 114

[Close]

BLAST of Cucsat.G12328 vs. NCBI nr
Match: KAE9448121.1 (hypothetical protein C3L33_19980, partial [Rhododendron williamsianum])

HSP 1 Score: 219 bits (559), Expect = 7.23e-72
Identity = 105/110 (95.45%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 7   GGIVVSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 66
           G ++V VNVPKTKKTYCKSK+CRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK
Sbjct: 5   GNLLVQVNVPKTKKTYCKSKDCRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 64

Query: 67  PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 116
           PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 65  PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 114

[Close]

BLAST of Cucsat.G12328 vs. NCBI nr
Match: KAG5549369.1 (hypothetical protein RHGRI_014649 [Rhododendron griersonianum])

HSP 1 Score: 219 bits (558), Expect = 1.13e-71
Identity = 105/110 (95.45%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 7   GGIVVSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 66
           G ++V VNVPKTKKTYCKSK+CRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK
Sbjct: 8   GNMLVQVNVPKTKKTYCKSKDCRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 67

Query: 67  PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 116
           PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 68  PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 117

[Close]

BLAST of Cucsat.G12328 vs. NCBI nr
Match: TKS12319.1 (60S ribosomal protein L44-like [Populus alba])

HSP 1 Score: 218 bits (556), Expect = 2.29e-71
Identity = 106/117 (90.60%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MDSKGSGGIV-VSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQS 60
           M++ G+GG+V + VNVPKTKKTYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQS
Sbjct: 1   METIGNGGLVGLEVNVPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQS 60

Query: 61  GYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 116
           GYGGQTKPVFHKKAKTTKKIVLRLQCQ CKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  GYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 117

[Close]

BLAST of Cucsat.G12328 vs. NCBI nr
Match: KAF7152886.1 (hypothetical protein RHSIM_Rhsim01G0066500 [Rhododendron simsii] >KAF7153129.1 hypothetical protein RHSIM_Rhsim01G0065700 [Rhododendron simsii])

HSP 1 Score: 218 bits (555), Expect = 3.47e-71
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 9   IVVSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPV 68
           + V VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPV
Sbjct: 12  VFVQVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPV 71

Query: 69  FHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 116
           FHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 72  FHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 119

[Close]

BLAST of Cucsat.G12328 vs. ExPASy TrEMBL
Match: A0A5D3C196 (60S ribosomal protein L44-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00120 PE=3 SV=1)

HSP 1 Score: 226 bits (575), Expect = 1.27e-74
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MDSKGSGGIVVSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSG 60
           MDS+GS GIVV  NVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSG
Sbjct: 1   MDSRGSTGIVV--NVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSG 60

Query: 61  YGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 116
           YGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  YGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 114

[Close]

BLAST of Cucsat.G12328 vs. ExPASy TrEMBL
Match: A0A6A4KXJ7 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_19980 PE=3 SV=1)

HSP 1 Score: 219 bits (559), Expect = 3.50e-72
Identity = 105/110 (95.45%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 7   GGIVVSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 66
           G ++V VNVPKTKKTYCKSK+CRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK
Sbjct: 5   GNLLVQVNVPKTKKTYCKSKDCRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 64

Query: 67  PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 116
           PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 65  PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 114

[Close]

BLAST of Cucsat.G12328 vs. ExPASy TrEMBL
Match: A0A4U5QPS5 (60S ribosomal protein L44-like OS=Populus alba OX=43335 GN=D5086_0000064390 PE=3 SV=1)

HSP 1 Score: 218 bits (556), Expect = 1.11e-71
Identity = 106/117 (90.60%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MDSKGSGGIV-VSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQS 60
           M++ G+GG+V + VNVPKTKKTYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQS
Sbjct: 1   METIGNGGLVGLEVNVPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQS 60

Query: 61  GYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 116
           GYGGQTKPVFHKKAKTTKKIVLRLQCQ CKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  GYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 117

[Close]

BLAST of Cucsat.G12328 vs. ExPASy TrEMBL
Match: A0A1R3H6E5 (Ribosomal protein L44e OS=Corchorus olitorius OX=93759 GN=COLO4_30903 PE=3 SV=1)

HSP 1 Score: 216 bits (551), Expect = 4.64e-71
Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 10  VVSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF 69
           ++ VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF
Sbjct: 1   MLEVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF 60

Query: 70  HKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 116
           HKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  HKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 107

[Close]

BLAST of Cucsat.G12328 vs. ExPASy TrEMBL
Match: A0A0D2T6A8 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G148400 PE=3 SV=1)

HSP 1 Score: 216 bits (551), Expect = 4.79e-71
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 9   IVVSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPV 68
           +V  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPV
Sbjct: 1   MVPPVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPV 60

Query: 69  FHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 116
           FHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  FHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 108

The following BLAST results are available for this feature:

BLAST of Cucsat.G12328 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96499	9.5e-56	100.00	60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3	[more]
O23290	3.7e-52	93.27	60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3	[more]
O59870	2.1e-42	77.67	60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3	[more]
P0CQ51	3.5e-42	77.67	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]
P0CQ50	3.5e-42	77.67	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]

BLAST of Cucsat.G12328 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052770.1	2.62e-74	96.55	60S ribosomal protein L44-like [Cucumis melo var. makuwa] >TYK04186.1 60S riboso...	[more]
KAE9448121.1	7.23e-72	95.45	hypothetical protein C3L33_19980, partial [Rhododendron williamsianum]	[more]
KAG5549369.1	1.13e-71	95.45	hypothetical protein RHGRI_014649 [Rhododendron griersonianum]	[more]
TKS12319.1	2.29e-71	90.60	60S ribosomal protein L44-like [Populus alba]	[more]
KAF7152886.1	3.47e-71	97.22	hypothetical protein RHSIM_Rhsim01G0066500 [Rhododendron simsii] >KAF7153129.1 h...	[more]

BLAST of Cucsat.G12328 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C196	1.27e-74	96.55	60S ribosomal protein L44-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6A4KXJ7	3.50e-72	95.45	Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3...	[more]
A0A4U5QPS5	1.11e-71	90.60	60S ribosomal protein L44-like OS=Populus alba OX=43335 GN=D5086_0000064390 PE=3...	[more]
A0A1R3H6E5	4.64e-71	97.20	Ribosomal protein L44e OS=Corchorus olitorius OX=93759 GN=COLO4_30903 PE=3 SV=1	[more]
A0A0D2T6A8	4.79e-71	97.22	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G148400 PE=3 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000552	Ribosomal protein L44e	PFAM	PF00935	Ribosomal_L44	coord: 19..90 e-value: 3.3E-30 score: 104.4
IPR000552	Ribosomal protein L44e	PANTHER	PTHR10369	60S RIBOSOMAL PROTEIN L36A/L44	coord: 1..94
IPR000552	Ribosomal protein L44e	PROSITE	PS01172	RIBOSOMAL_L44E	coord: 63..74
None	No IPR available	GENE3D	3.10.450.80		coord: 1..94 e-value: 2.6E-43 score: 148.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..56
None	No IPR available	PANTHER	PTHR10369:SF40	60S RIBOSOMAL PROTEIN L44-LIKE	coord: 1..94
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 2..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G12328.T2	Cucsat.G12328.T2	mRNA
Cucsat.G12328.T1	Cucsat.G12328.T1	mRNA
Cucsat.G12328.T12	Cucsat.G12328.T12	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome