Cucsat.G12327 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G12327
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Growth-regulating factor
Location	ctg1837: 127242 .. 129861 (+)
RNA-Seq Expression	Cucsat.G12327
Synteny	Cucsat.G12327

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTATAGAGTAGAGAAGGATTTATGACTCCAAGGGAACCCACCCAGCACAAGGAACCCAGAGGGAAGGGTGAAAAAATATAATATAATGTAATGTAAATAAATTGAAGGAAAAGAGAAAAAGGCAAAAGATGGGGGAAGTTAATGTTATAAAAAGGGAGAAGGGTTTTGGTTAGATCCTTCAGCCTCCTGAGTGTTCAATAGGAGGAAGACAGGTGCCAGTGTTAATTTGTTTGGCATTGATAAAGGAGTTTGTGTAGGTACATCACACCACATTGTTTCAGCAGTAGTTTTTTGCAAAATCTCATGGCACAGTTTTCAAGGAATTGTGATGTGGAGAGAGCAAAATCAAGGGTGTGTCTATGATATTTTGTTTCTTTTTCTCTTTCTTTTATCCATTTGTATGTGAATTTCTGTAAGGACGTCAGAGACAAAAGCAGCAATGAAAGCAGAGGCAGAACCCAACAGAAGAGTAGTCATATAACTTCAGACTGCAACTGAGAGAAAGAGAAAGAGAAAGAGAAAGAGAGAAGGTATCAGTAAGCCATCATTTGACAGAAACAAGCTTTCACAACCTATGGACTTTGCAGAAATACCCATAAAAAACTAGCATCCCCCCAAGAACAACATACCCTCCTCTCTGTCTTTCAAGCCTTTCGAACTTGGTCCTTTTTAAAGATTTTTCTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTATATATATTTTTCCTATTTTTTTGTTCTACTTTCAAGAATAATGAATTCAAGTCCAAAGACCTGCACCTCTCCATTCACAGCAACTCAATGGCAAGAACTTGAACACCAAGCTCTGATCTTCAAACACATGGTTTCAGGAGTACCAATCCCTCCTGATCTAATCTTCTCTGTCAAAAGAAGCTTGGATTCCTCCATTTCTGCAAGACTCTTCCCTCACCAACCCAGTAAGTCGCCATTACATGACTTTTCAAAACAGTTCCCTCTCTTTCCATTTTCTTATCTCTGTTTTCAGATGCAAGCAGATTACTAATCTGACTGTTTGATTGTGTTTTTCAACAGTTGGATGGGGTTGTTTTGAGATGGGTTTTGGTCGGAAAACAGACCCAGAGCCAGGAAGATGCAGAAGAACCGATGGAAAAAAATGGAGATGTTCAAAAGAAGCTTATCCAGACTCCAAATACTGTGAGAGGCACATGCATAGAGGCAGAAATCGTTCAAGAAAGCCTGTGGAAATCTCTTCAACACCACCAATTCAAACCCCAACTCCTTTAATCCTCACTTCAACCAGAACCCTCTCTTCTTCTTCTTCCACTCCAACCTCCTCTTCCTATCCTCTCTCTACACTTTCTTCTTCTTCTTCTTCACTGACTTCTGAAACTCAATCCTATCACCAACCACCTCCTCCTGCTTATCACGAATCCTCCATTCATCCATTTCTGTATTCTCAATCATCCTCCAGAACTCCATGCTCTGATTTCTCTTCGAACATCACAAACCCTCAACTCTTCTTGTACTCAGGGACTCATTCTCAATCTGATAAAGACTACAGGTCGGTGAAAATGAAAAGTTTTATAAACGTTTCCTTTTTCTATGATGGGTTGTTTTTCTCTTTTTCTTGGAGTTTGATGATTAATATTATAAGTAATGTTGATATAAAGTATTGATTAACATGACATGTAGTTAAACCTTATTGTGTCTTGTGTTAAGTAGGGATATTAGTGGTTCAAGAGAGGGTGTGGGAATGCAGGCGTTCTTTCCCTCAGTTGCTGATTCTGCTAGAAGCATTGCTGAGGTTTATAGTCAGCCAATAGGGATGGATTCTTACAAAGGATGCTCACAATATGTCTCTCAAAACCATCAAATTTACAGTTCTAAACAGGCAAGGCAACAGCAAGAACAACACTGCTTTGTTTTGGGTACAGACTTCAATAAATCATCAAGATCAGCTAAAACAGAGGAAGAAGATGAAGATGCAGAAACCCAGAAGCCTCTACTCCACTTCTTTGAGGATTGCCCACCTAAAAGCTCAGATTCCTGGCTTGATTTAGCCTCAAATTCAAGTATACAAAGTGGAAATTTTATTGGGTTATGAATACTATTCCTGCTCTGCTTACTTCTTGAGCTGTAATCTGACACTTCTCACTTCACCTCTCTTTTTTCTCTCTCTGTTTCTGTGCAGATGGTTAAAGTTTCAATAATGGAGTTTTGGGTTATGGCCAAAAGAGTACTTGTCAGTGAGTGAAGTGTCCTCTTTTTTTTTCCTTCTTAGTTTGCGGTCAGGGAAGCTTTTCTTTTGCTAAAGTTTTGAATGTAAAACTGCAGGATTCTCAAGAGAGGTTTTCTGTCCTTTGCTTTCTTTTGATATTTTCCTTTTTTCCACTTGCTGTCTCTTTCTGTAAGAAACATGTTTCAAAGTATGCAGCCTTGCTTATTTGATTGGAAGCATGGAGAGTGCACAAATAAGCACTCTGACAATTTTCACCCTAAACAAACAGAAAATTTGCTAGATTCTGTCTTCCAACTCCATAACTAAATGCACTTTCCTTTTCCTGACTAATAGGTTGTTTCTTAGTATTCTCAAAAACAACTTAAGCTAAATCTTAATAAAAGTTAGCTGCTCCTTTTTTTAATAGTATCATCTGAGCATCATGTTTTGTTTTTGTTATGAATAATGATTTCAAATACTCAGCTACCTAAAAGTTTATGAATGTAAAGTTGTTCTTTACCAAAAGTCTGAAC

Coding sequence (CDS)

ATGAATTCAAGTCCAAAGACCTGCACCTCTCCATTCACAGCAACTCAATGGCAAGAACTTGAACACCAAGCTCTGATCTTCAAACACATGGTTTCAGGAGTACCAATCCCTCCTGATCTAATCTTCTCTGTCAAAAGAAGCTTGGATTCCTCCATTTCTGCAAGACTCTTCCCTCACCAACCCATTGGATGGGGTTGTTTTGAGATGGGTTTTGGTCGGAAAACAGACCCAGAGCCAGGAAGATGCAGAAGAACCGATGGAAAAAAATGGAGATGTTCAAAAGAAGCTTATCCAGACTCCAAATACTGTGAGAGGCACATGCATAGAGGCAGAAATCGTTCAAGAAAGCCTGTGGAAATCTCTTCAACACCACCAATTCAAACCCCAACTCCTTTAATCCTCACTTCAACCAGAACCCTCTCTTCTTCTTCTTCCACTCCAACCTCCTCTTCCTATCCTCTCTCTACACTTTCTTCTTCTTCTTCTTCACTGACTTCTGAAACTCAATCCTATCACCAACCACCTCCTCCTGCTTATCACGAATCCTCCATTCATCCATTTCTGTATTCTCAATCATCCTCCAGAACTCCATGCTCTGATTTCTCTTCGAACATCACAAACCCTCAACTCTTCTTGTACTCAGGGACTCATTCTCAATCTGATAAAGACTACAGGGATATTAGTGGTTCAAGAGAGGGTGTGGGAATGCAGGCGTTCTTTCCCTCAGTTGCTGATTCTGCTAGAAGCATTGCTGAGGTTTATAGTCAGCCAATAGGGATGGATTCTTACAAAGGATGCTCACAATATGTCTCTCAAAACCATCAAATTTACAGTTCTAAACAGGCAAGGCAACAGCAAGAACAACACTGCTTTGTTTTGGGTACAGACTTCAATAAATCATCAAGATCAGCTAAAACAGAGGAAGAAGATGAAGATGCAGAAACCCAGAAGCCTCTACTCCACTTCTTTGAGGATTGCCCACCTAAAAGCTCAGATTCCTGGCTTGATTTAGCCTCAAATTCAAGTATACAAAGTGGAAATTTTATTGGGTTATGA

Protein sequence

MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQPIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEISSTPPIQTPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQSYHQPPPPAYHESSIHPFLYSQSSSRTPCSDFSSNITNPQLFLYSGTHSQSDKDYRDISGSREGVGMQAFFPSVADSARSIAEVYSQPIGMDSYKGCSQYVSQNHQIYSSKQARQQQEQHCFVLGTDFNKSSRSAKTEEEDEDAETQKPLLHFFEDCPPKSSDSWLDLASNSSIQSGNFIGL

Homology

[Close]

BLAST of Cucsat.G12327 vs. ExPASy Swiss-Prot
Match: Q8L8A6 (Growth-regulating factor 5 OS=Arabidopsis thaliana OX=3702 GN=GRF5 PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 6.5e-52
Identity = 108/185 (58.38%), Postives = 137/185 (74.05%), Query Frame = 0


Query: 11  PFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQPIGWGCFEMG 70
           PFT TQW+ELEHQALI+K+MVSGVP+PP+LIFS++RSLD+S+ +RL PHQ +GWGC++MG
Sbjct: 16  PFTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRRSLDTSLVSRLLPHQSLGWGCYQMG 75

Query: 71  FGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEISSTPPIQTPT 130
           FGRK DPEPGRCRRTDGKKWRCS+EAYPDSKYCE+HMHRGRNR+RK ++ + T    T T
Sbjct: 76  FGRKPDPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLDQNQT----TTT 135

Query: 131 PLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQSYHQPPPPAYHESSIHPFLYS 190
           PL   S    ++++ +PT S       SSSSS+ +S T S       AY  S+      S
Sbjct: 136 PLTSPSLSFTNNNNPSPTLS-------SSSSSNSSSTTYSASSSSMDAYSNSNRFGLGGS 189

Query: 191 QSSSR 196
            S++R
Sbjct: 196 SSNTR 189

[Close]

BLAST of Cucsat.G12327 vs. ExPASy Swiss-Prot
Match: Q6AWY8 (Growth-regulating factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GRF1 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 6.9e-46
Identity = 112/233 (48.07%), Postives = 150/233 (64.38%), Query Frame = 0


Query: 11  PFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRS--LDSSIS---ARLFPHQP-IGW 70
           PFTA+QWQELEHQALI+K+M SG PIP DLI  ++RS  LDS+++   +  FP QP +GW
Sbjct: 18  PFTASQWQELEHQALIYKYMASGTPIPSDLILPLRRSFLLDSALATSPSLAFPPQPSLGW 77

Query: 71  GCFEMGFGRKT-DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEISST 130
           GCF MGFGRK  DPEPGRCRRTDGKKWRCSKEAYPDSKYCE+HMHRG+NRSRKPVE+S  
Sbjct: 78  GCFGMGFGRKAEDPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVEMS-- 137

Query: 131 PPIQTPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQSYHQPPPPAYHESS 190
             + TP P           SSS  +++S   + ++ ++++ +S   SY +P P   H+++
Sbjct: 138 --LATPPP----------PSSSATSAASNTSAGVAPTTTTTSSPAPSYSRPAP---HDAA 197

Query: 191 IHPFL----YSQSSSRTPCSDFSSNITNPQLFLYSGTHSQSDKDYRSVKMKSF 233
            +  L    Y+ +++RTP +       +P       TH      Y S+  K +
Sbjct: 198 PYQALYGGPYAAATARTPAAAAYHAQVSPFHLQLDTTHPHPPPSYYSMDHKEY 233

[Close]

BLAST of Cucsat.G12327 vs. ExPASy Swiss-Prot
Match: A2XA73 (Growth-regulating factor 1 OS=Oryza sativa subsp. indica OX=39946 GN=GRF1 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 9.1e-46
Identity = 112/233 (48.07%), Postives = 150/233 (64.38%), Query Frame = 0


Query: 11  PFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRS--LDSSIS---ARLFPHQP-IGW 70
           PFTA+QWQELEHQALI+K+M SG PIP DLI  ++RS  LDS+++   +  FP QP +GW
Sbjct: 18  PFTASQWQELEHQALIYKYMASGTPIPSDLILPLRRSFLLDSALATSPSLAFPPQPSLGW 77

Query: 71  GCFEMGFGRKT-DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEISST 130
           GCF MGFGRK  DPEPGRCRRTDGKKWRCSKEAYPDSKYCE+HMHRG+NRSRKPVE+S  
Sbjct: 78  GCFGMGFGRKAEDPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVEMS-- 137

Query: 131 PPIQTPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQSYHQPPPPAYHESS 190
             + TP P           SSS  +++S   + ++ ++++ +S   SY +P P   H+++
Sbjct: 138 --LATPPP----------PSSSATSAASNSSAGVAPTTTTTSSPAPSYSRPAP---HDAA 197

Query: 191 IHPFL----YSQSSSRTPCSDFSSNITNPQLFLYSGTHSQSDKDYRSVKMKSF 233
            +  L    Y+ +++RTP +       +P       TH      Y S+  K +
Sbjct: 198 PYQALYGGPYAAATARTPAAAAYHAQVSPFHLHIDTTHPHPPPSYYSMDHKEY 233

[Close]

BLAST of Cucsat.G12327 vs. ExPASy Swiss-Prot
Match: A0A060D764 (Growth-regulating factor 1 OS=Zea mays OX=4577 GN=GRF1 PE=1 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 6.3e-39
Identity = 80/141 (56.74%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 11  PFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQPIGWGCFEMG 70
           PFT  Q+QELE QALI+K++V+GVP+PPDL+  ++R LD S++ R +    +G+G +   
Sbjct: 59  PFTPAQYQELEQQALIYKYLVAGVPVPPDLVVPIRRGLD-SLATRFYGQPTLGYGPY--- 118

Query: 71  FGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEISSTPPIQTPT 130
            GRK DPEPGRCRRTDGKKWRCSKEA PDSKYCERHMHRGRNRSRKPVE    P  Q P 
Sbjct: 119 LGRKLDPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVETQLAPQSQPPA 178

Query: 131 PLILTSTRTLSSSSSTPTSSS 152
              +++   L+++++  T+ S
Sbjct: 179 AAAVSAAPPLAAAAAATTNGS 195

[Close]

BLAST of Cucsat.G12327 vs. ExPASy Swiss-Prot
Match: Q6AWY6 (Growth-regulating factor 3 OS=Oryza sativa subsp. japonica OX=39947 GN=GRF3 PE=3 SV=2)

HSP 1 Score: 159.1 bits (401), Expect = 6.9e-38
Identity = 81/143 (56.64%), Postives = 103/143 (72.03%), Query Frame = 0


Query: 11  PFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQPIGWGCFEMG 70
           PFTA Q++ELE QALI+K++V+GVP+P DL+  ++R LD S+++R + H  +G+G +   
Sbjct: 53  PFTAAQYEELEQQALIYKYLVAGVPVPADLLLPIRRGLD-SLASRFYHHPVLGYGSY--- 112

Query: 71  FGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEISSTPPIQTPT 130
           FG+K DPEPGRCRRTDGKKWRCSKEA PDSKYCERHMHRGRNRSRKPVE     P   P 
Sbjct: 113 FGKKLDPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEAQLVAPHSQPP 172

Query: 131 PLILTSTRTLSSSSSTPTSSSYP 154
               T+     +S++    S YP
Sbjct: 173 ---ATAPAAAVTSTAFQNHSLYP 188

[Close]

BLAST of Cucsat.G12327 vs. NCBI nr
Match: XP_011651737.1 (growth-regulating factor 5 isoform X2 [Cucumis sativus] >XP_031738669.1 growth-regulating factor 5 isoform X2 [Cucumis sativus] >KAE8650906.1 hypothetical protein Csa_001606 [Cucumis sativus])

HSP 1 Score: 450 bits (1158), Expect = 4.11e-157
Identity = 225/227 (99.12%), Postives = 226/227 (99.56%), Query Frame = 0


Query: 1   MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60
           MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ
Sbjct: 1   MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60

Query: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120
           PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI
Sbjct: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120

Query: 121 SSTPPIQTPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQSYHQPPPPAYH 180
           SSTPPIQTPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQSYHQPPPPAYH
Sbjct: 121 SSTPPIQTPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQSYHQPPPPAYH 180

Query: 181 ESSIHPFLYSQSSSRTPCSDFSSNITNPQLFLYSGTHSQSDKDYRSV 227
           ESSIHPFLYSQSSSRTPCSDFSSNITNPQLFLYSGTHSQSDKDYR +
Sbjct: 181 ESSIHPFLYSQSSSRTPCSDFSSNITNPQLFLYSGTHSQSDKDYRDI 227

[Close]

BLAST of Cucsat.G12327 vs. NCBI nr
Match: XP_004148588.1 (growth-regulating factor 5 isoform X1 [Cucumis sativus])

HSP 1 Score: 450 bits (1158), Expect = 5.46e-157
Identity = 225/227 (99.12%), Postives = 226/227 (99.56%), Query Frame = 0


Query: 1   MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60
           MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ
Sbjct: 1   MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60

Query: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120
           PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI
Sbjct: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120

Query: 121 SSTPPIQTPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQSYHQPPPPAYH 180
           SSTPPIQTPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQSYHQPPPPAYH
Sbjct: 121 SSTPPIQTPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQSYHQPPPPAYH 180

Query: 181 ESSIHPFLYSQSSSRTPCSDFSSNITNPQLFLYSGTHSQSDKDYRSV 227
           ESSIHPFLYSQSSSRTPCSDFSSNITNPQLFLYSGTHSQSDKDYR +
Sbjct: 181 ESSIHPFLYSQSSSRTPCSDFSSNITNPQLFLYSGTHSQSDKDYRDI 227

[Close]

BLAST of Cucsat.G12327 vs. NCBI nr
Match: XP_008463996.1 (PREDICTED: growth-regulating factor 5 isoform X2 [Cucumis melo] >KAA0058523.1 growth-regulating factor 5-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 437 bits (1124), Expect = 5.93e-152
Identity = 220/227 (96.92%), Postives = 222/227 (97.80%), Query Frame = 0


Query: 1   MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60
           MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ
Sbjct: 1   MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60

Query: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120
           PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI
Sbjct: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120

Query: 121 SSTPPIQTPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQSYHQPPPPAYH 180
           SSTPP QTPTPLILTSTRTLSSSS TPTSSSYPLSTLSSSSS LTSETQSYHQPPPPAYH
Sbjct: 121 SSTPPTQTPTPLILTSTRTLSSSSPTPTSSSYPLSTLSSSSS-LTSETQSYHQPPPPAYH 180

Query: 181 ESSIHPFLYSQSSSRTPCSDFSSNITNPQLFLYSGTHSQSDKDYRSV 227
           ESSIHPFLYSQSSSRTPCSDFSSN TNPQLFLYSGTHSQ+DKDYR +
Sbjct: 181 ESSIHPFLYSQSSSRTPCSDFSSNNTNPQLFLYSGTHSQADKDYRDI 226

[Close]

BLAST of Cucsat.G12327 vs. NCBI nr
Match: XP_008463995.1 (PREDICTED: growth-regulating factor 5 isoform X1 [Cucumis melo] >TYK07223.1 growth-regulating factor 5 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 437 bits (1124), Expect = 7.86e-152
Identity = 220/227 (96.92%), Postives = 222/227 (97.80%), Query Frame = 0


Query: 1   MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60
           MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ
Sbjct: 1   MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60

Query: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120
           PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI
Sbjct: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120

Query: 121 SSTPPIQTPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQSYHQPPPPAYH 180
           SSTPP QTPTPLILTSTRTLSSSS TPTSSSYPLSTLSSSSS LTSETQSYHQPPPPAYH
Sbjct: 121 SSTPPTQTPTPLILTSTRTLSSSSPTPTSSSYPLSTLSSSSS-LTSETQSYHQPPPPAYH 180

Query: 181 ESSIHPFLYSQSSSRTPCSDFSSNITNPQLFLYSGTHSQSDKDYRSV 227
           ESSIHPFLYSQSSSRTPCSDFSSN TNPQLFLYSGTHSQ+DKDYR +
Sbjct: 181 ESSIHPFLYSQSSSRTPCSDFSSNNTNPQLFLYSGTHSQADKDYRDI 226

[Close]

BLAST of Cucsat.G12327 vs. NCBI nr
Match: XP_038879726.1 (growth-regulating factor 5 isoform X2 [Benincasa hispida] >XP_038879734.1 growth-regulating factor 5 isoform X2 [Benincasa hispida])

HSP 1 Score: 411 bits (1057), Expect = 8.62e-142
Identity = 212/228 (92.98%), Postives = 217/228 (95.18%), Query Frame = 0


Query: 1   MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60
           MNSSPKTCTSPFTATQWQELEHQALIFK+MVSGVPIPPDLIFSVKRSLDSSISARLFPHQ
Sbjct: 1   MNSSPKTCTSPFTATQWQELEHQALIFKYMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60

Query: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120
           PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI
Sbjct: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120

Query: 121 SSTPPIQTPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSS-LTSETQSYHQPPPPAY 180
           SSTPP QTP+PLILTSTRTLSS   TPTSSSYPLSTLSSSSSS LT ETQSY+QPPP AY
Sbjct: 121 SSTPPTQTPSPLILTSTRTLSS---TPTSSSYPLSTLSSSSSSSLTCETQSYNQPPP-AY 180

Query: 181 HESSIHPFLYSQSSSRTPCSDFSSNITNPQLFLYSGTHSQSDKDYRSV 227
           HESSIHPFLY QSSSR PCSDFSSN TNPQLFLYSGTHSQ+DKDYR +
Sbjct: 181 HESSIHPFLYHQSSSRPPCSDFSSNNTNPQLFLYSGTHSQADKDYRDI 224

[Close]

BLAST of Cucsat.G12327 vs. ExPASy TrEMBL
Match: A0A0A0LCW4 (Growth-regulating factor OS=Cucumis sativus OX=3659 GN=Csa_3G651860 PE=3 SV=1)

HSP 1 Score: 450 bits (1158), Expect = 2.64e-157
Identity = 225/227 (99.12%), Postives = 226/227 (99.56%), Query Frame = 0


Query: 1   MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60
           MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ
Sbjct: 1   MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60

Query: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120
           PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI
Sbjct: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120

Query: 121 SSTPPIQTPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQSYHQPPPPAYH 180
           SSTPPIQTPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQSYHQPPPPAYH
Sbjct: 121 SSTPPIQTPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQSYHQPPPPAYH 180

Query: 181 ESSIHPFLYSQSSSRTPCSDFSSNITNPQLFLYSGTHSQSDKDYRSV 227
           ESSIHPFLYSQSSSRTPCSDFSSNITNPQLFLYSGTHSQSDKDYR +
Sbjct: 181 ESSIHPFLYSQSSSRTPCSDFSSNITNPQLFLYSGTHSQSDKDYRDI 227

[Close]

BLAST of Cucsat.G12327 vs. ExPASy TrEMBL
Match: A0A5A7URN0 (Growth-regulating factor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G001210 PE=3 SV=1)

HSP 1 Score: 437 bits (1124), Expect = 2.87e-152
Identity = 220/227 (96.92%), Postives = 222/227 (97.80%), Query Frame = 0


Query: 1   MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60
           MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ
Sbjct: 1   MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60

Query: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120
           PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI
Sbjct: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120

Query: 121 SSTPPIQTPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQSYHQPPPPAYH 180
           SSTPP QTPTPLILTSTRTLSSSS TPTSSSYPLSTLSSSSS LTSETQSYHQPPPPAYH
Sbjct: 121 SSTPPTQTPTPLILTSTRTLSSSSPTPTSSSYPLSTLSSSSS-LTSETQSYHQPPPPAYH 180

Query: 181 ESSIHPFLYSQSSSRTPCSDFSSNITNPQLFLYSGTHSQSDKDYRSV 227
           ESSIHPFLYSQSSSRTPCSDFSSN TNPQLFLYSGTHSQ+DKDYR +
Sbjct: 181 ESSIHPFLYSQSSSRTPCSDFSSNNTNPQLFLYSGTHSQADKDYRDI 226

[Close]

BLAST of Cucsat.G12327 vs. ExPASy TrEMBL
Match: A0A1S3CKH6 (Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103501987 PE=3 SV=1)

HSP 1 Score: 437 bits (1124), Expect = 2.87e-152
Identity = 220/227 (96.92%), Postives = 222/227 (97.80%), Query Frame = 0


Query: 1   MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60
           MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ
Sbjct: 1   MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60

Query: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120
           PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI
Sbjct: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120

Query: 121 SSTPPIQTPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQSYHQPPPPAYH 180
           SSTPP QTPTPLILTSTRTLSSSS TPTSSSYPLSTLSSSSS LTSETQSYHQPPPPAYH
Sbjct: 121 SSTPPTQTPTPLILTSTRTLSSSSPTPTSSSYPLSTLSSSSS-LTSETQSYHQPPPPAYH 180

Query: 181 ESSIHPFLYSQSSSRTPCSDFSSNITNPQLFLYSGTHSQSDKDYRSV 227
           ESSIHPFLYSQSSSRTPCSDFSSN TNPQLFLYSGTHSQ+DKDYR +
Sbjct: 181 ESSIHPFLYSQSSSRTPCSDFSSNNTNPQLFLYSGTHSQADKDYRDI 226

[Close]

BLAST of Cucsat.G12327 vs. ExPASy TrEMBL
Match: A0A5D3C5L5 (Growth-regulating factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001130 PE=3 SV=1)

HSP 1 Score: 437 bits (1124), Expect = 3.81e-152
Identity = 220/227 (96.92%), Postives = 222/227 (97.80%), Query Frame = 0


Query: 1   MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60
           MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ
Sbjct: 1   MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60

Query: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120
           PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI
Sbjct: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120

Query: 121 SSTPPIQTPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQSYHQPPPPAYH 180
           SSTPP QTPTPLILTSTRTLSSSS TPTSSSYPLSTLSSSSS LTSETQSYHQPPPPAYH
Sbjct: 121 SSTPPTQTPTPLILTSTRTLSSSSPTPTSSSYPLSTLSSSSS-LTSETQSYHQPPPPAYH 180

Query: 181 ESSIHPFLYSQSSSRTPCSDFSSNITNPQLFLYSGTHSQSDKDYRSV 227
           ESSIHPFLYSQSSSRTPCSDFSSN TNPQLFLYSGTHSQ+DKDYR +
Sbjct: 181 ESSIHPFLYSQSSSRTPCSDFSSNNTNPQLFLYSGTHSQADKDYRDI 226

[Close]

BLAST of Cucsat.G12327 vs. ExPASy TrEMBL
Match: A0A1S3CKJ2 (Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103501987 PE=3 SV=1)

HSP 1 Score: 437 bits (1124), Expect = 3.81e-152
Identity = 220/227 (96.92%), Postives = 222/227 (97.80%), Query Frame = 0


Query: 1   MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60
           MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ
Sbjct: 1   MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQ 60

Query: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120
           PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI
Sbjct: 61  PIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEI 120

Query: 121 SSTPPIQTPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQSYHQPPPPAYH 180
           SSTPP QTPTPLILTSTRTLSSSS TPTSSSYPLSTLSSSSS LTSETQSYHQPPPPAYH
Sbjct: 121 SSTPPTQTPTPLILTSTRTLSSSSPTPTSSSYPLSTLSSSSS-LTSETQSYHQPPPPAYH 180

Query: 181 ESSIHPFLYSQSSSRTPCSDFSSNITNPQLFLYSGTHSQSDKDYRSV 227
           ESSIHPFLYSQSSSRTPCSDFSSN TNPQLFLYSGTHSQ+DKDYR +
Sbjct: 181 ESSIHPFLYSQSSSRTPCSDFSSNNTNPQLFLYSGTHSQADKDYRDI 226

The following BLAST results are available for this feature:

BLAST of Cucsat.G12327 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L8A6	6.5e-52	58.38	Growth-regulating factor 5 OS=Arabidopsis thaliana OX=3702 GN=GRF5 PE=1 SV=1	[more]
Q6AWY8	6.9e-46	48.07	Growth-regulating factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GRF1 PE=3...	[more]
A2XA73	9.1e-46	48.07	Growth-regulating factor 1 OS=Oryza sativa subsp. indica OX=39946 GN=GRF1 PE=2 S...	[more]
A0A060D764	6.3e-39	56.74	Growth-regulating factor 1 OS=Zea mays OX=4577 GN=GRF1 PE=1 SV=1	[more]
Q6AWY6	6.9e-38	56.64	Growth-regulating factor 3 OS=Oryza sativa subsp. japonica OX=39947 GN=GRF3 PE=3...	[more]

BLAST of Cucsat.G12327 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651737.1	4.11e-157	99.12	growth-regulating factor 5 isoform X2 [Cucumis sativus] >XP_031738669.1 growth-r...	[more]
XP_004148588.1	5.46e-157	99.12	growth-regulating factor 5 isoform X1 [Cucumis sativus]	[more]
XP_008463996.1	5.93e-152	96.92	PREDICTED: growth-regulating factor 5 isoform X2 [Cucumis melo] >KAA0058523.1 gr...	[more]
XP_008463995.1	7.86e-152	96.92	PREDICTED: growth-regulating factor 5 isoform X1 [Cucumis melo] >TYK07223.1 grow...	[more]
XP_038879726.1	8.62e-142	92.98	growth-regulating factor 5 isoform X2 [Benincasa hispida] >XP_038879734.1 growth...	[more]

BLAST of Cucsat.G12327 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCW4	2.64e-157	99.12	Growth-regulating factor OS=Cucumis sativus OX=3659 GN=Csa_3G651860 PE=3 SV=1	[more]
A0A5A7URN0	2.87e-152	96.92	Growth-regulating factor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A1S3CKH6	2.87e-152	96.92	Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103501987 PE=3 SV=1	[more]
A0A5D3C5L5	3.81e-152	96.92	Growth-regulating factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CKJ2	3.81e-152	96.92	Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103501987 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014978	Glutamine-Leucine-Glutamine, QLQ	SMART	SM00951	QLQ_2	coord: 10..46 e-value: 2.4E-12 score: 57.0
IPR014978	Glutamine-Leucine-Glutamine, QLQ	PFAM	PF08880	QLQ	coord: 11..44 e-value: 2.8E-15 score: 55.8
IPR014978	Glutamine-Leucine-Glutamine, QLQ	PROSITE	PS51666	QLQ	coord: 11..46 score: 21.96147
IPR014977	WRC domain	PFAM	PF08879	WRC	coord: 77..119 e-value: 1.8E-21 score: 75.5
IPR014977	WRC domain	PROSITE	PS51667	WRC	coord: 76..120 score: 24.94142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 322..343
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..176
None	No IPR available	PANTHER	PTHR31602:SF60	GROWTH-REGULATING FACTOR 5	coord: 9..342
IPR031137	Growth-regulating factor	PANTHER	PTHR31602	FAMILY NOT NAMED	coord: 9..342

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G12327.T1	Cucsat.G12327.T1	mRNA
Cucsat.G12327.T5	Cucsat.G12327.T5	mRNA
Cucsat.G12327.T4	Cucsat.G12327.T4	mRNA
Cucsat.G12327.T3	Cucsat.G12327.T3	mRNA
Cucsat.G12327.T2	Cucsat.G12327.T2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0099402	plant organ development
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0032502	developmental process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding