Cucsat.G12278 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G12278
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	ras-related protein RABC2a
Location	ctg1837: 3278306 .. 3279855 (-)
RNA-Seq Expression	Cucsat.G12278
Synteny	Cucsat.G12278

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTACTAAAAAACATAAGAAAGATTTCAACTTTATTCCAAGAAAAATCTTAGTTTACAAGAAACTCCTTTGCTGAAACAGCAACCCAAGGCAGTAGAGTTAGGACAAAACCATGGACTTCACCCAAAAAAAGGTATAACATAATATTTGATAACAAAAACATAACATCTAAGAAAAGAGAAATAAAAGAGAGAGGGCAAAGAACAAATACGTTGTTGTCTCAGTTGGTGCTCACTTAGCCGTTTTCTTGGAAGTTATTCTTCTCTTTTTCTTTCATCAATAAAAACGGGCGTATAGAATTTTGTGTATTACTTTCTTCAAAATCCTACTTCTCCCCTTTTCCGTTCTCTGTTCTTCTGTTTGATTCTTGAAGAAGATCATCATCAAAATGGGATCTTCTTCTGGACAGAGTAGCAATTACGATCTGTCGTTTAAGGTCTTGTTGATCGGCGATTCAGGTGTCGGCAAAAGTAGTCTTCTTCTCAGCTTCATCTCTACTAATGCTGATAATCTTGCCCCTACGATTGGTAAGTTTTTGCTTTCCTCTCACCAACCAAACCCCACTTTTCCTTTTGCTTAAAGGAAGTGTTTGTCTGTTCATAATCTGTTTGAGGGAAGTGCTTTTCTGCTTATAACCTGTTTGGTTGTGGAGAAAATGAAGGAAAATGATGAACAGGAGATGCCCTTCTCGTCTTTTTCTTCTTTGTTGTGTTTTGGTTTCTATGTTTGGATCTGTTTTGTTTTTTGGCTTTTCTTTAATTAGTTTGTTTCTCTTTAGGTGTGGATTTTAAGATCAAGCTACTTAAGGTTGGTGGGAAAAGATTGAAGCTCACAATCTGGGATACTGGTAATGAATAAGCTTTAAACGGTTCTTTTATCTGCCTTTTTTTGTTGTTCAAATTCTGGAGATTTTTACTTCATTTATCTAATTTTTTTTAGTTTTGGCTCAAACTGTTTCTGTTTTGTTCCCTTTCTAAAATATGTGTGAAGAAGAAAGTTTGTACAAATTCATTGGAATCTCAATTTGTTTCTCTTCTTCCAATATCAATTCCTTTGCTTTTCACTTCATCTGAATTGTTTCTGAACTTGTGTAAGCCTTGGTTTCTTGCAGCTGGACAAGAGAGATTCAGAACGTTAACAAGCTCTTATTATAGAGGTGCCCAAGGGATCATTCTTGGTATGCTTCAAACTTTGAGCTCATCCTTCAAAGCTTGCTGAAGATTGTTTCACTGGCATTTTGTTGTCTTCTGAGCTAATATTTTTTTCTGGGTTTGTGGTGTTCATTTATCTTGAAATGCTCTACTTTTATCTTGAACCGAAATGGTGGACAATTGTTGAGGGTGGGGGAAATATTGGTTTGATTCAAATTAGAATTTCGTTACAACCTAAAACAGCAGTCGCTATTGGAAGTTTATCACATTTTGTTTGTTTCATTTGTCAATCAGTACATTCAATATAGTTATGTTCATTATCTTGTTGTAGTCTATGATGTCACGCGGAGAGAAACATTCACAAACTTATCCGACGTATGGGCTAAAGAAGTGGAACTCTACTCGACGAATAAGGACTGTGTCAAGATGCTTATTGGCAATAAAGTTGACAGAGTAAGTTTCCATCTTTCTCTGGTAGTCTCAACAGCAGTCCTCAAGATGTCTAAATTGAATGTTTGCATCTTCATTTGCAAATGATTTGTTGACTAACGCATGGAGGAGCGATCATCATTTAGGGAATGTTTCTAAGATCTATGTTATACAGCTTTAAGCTTTGTTCTACCATTCACATCTCAGAATTTTTCACGTACTTCTAAGTTGTCTTGAAAAAAATGATAGAACTTAATGTGTGTTTTACAAATAGGAATCTGAAAGGGCTGTGAGCAGAGAGGAGGGAATTGCTCTAGCAAAGGTGCTTGGATCCTATTTTCTTGAATGCAGTGCTAAAACTAGAGAGAATGTGGAGAAATGCTTTGAAGATTTGGCATTGAAGGTAGATTTCTTTCAAACCAACTTCGAGTATTGGAATCGAGAAACCAATCAACTTATTCTTTGTATAATCCGTTTCTTTTGTTCTCCACAGATAATGGAGGCTCCTAGTCTGATTGAAGAGGGTTCCACTGTTGTAAAAAGAAACATTCTGAAGCAGCAAGAGTTCCAGCCTGCATCAACTACAAGTTGCTGCCTTTGAAAACTCCAGTACGAAACATCGATCGATACCACGATTCTCCTCATCGAAAGTTCCTGTACATGTCTCCTACTGCTCCTTCTTGTCATTAAGTTGTTTGTTTGCTTAAATGACTGTAATTGGGAGTTGAAAAAGAAAATGAAATACATCCTTCCATCCACTTGTGTAATTTTTTCTTTCTTTCAGTTTTTTTCCCCTTATCTTTTGGCTTGTTTGGCATTGTATTGTATCTATCTATACTAACAAATTCGGCTTGTATCATATGATCAAACACATTACTCACTCGATATATGGAAGACTTGCATGGATTTCAAAATGGGAAGTCGTAATTCTGGAACAACAGTTACAAATTTGAATAAAATGAAAGATTAAGTGTG

Coding sequence (CDS)

ATGGGATCTTCTTCTGGACAGAGTAGCAATTACGATCTGTCGTTTAAGGTCTTGTTGATCGGCGATTCAGGTGTCGGCAAAAGTAGTCTTCTTCTCAGCTTCATCTCTACTAATGCTGATAATCTTGCCCCTACGATTGGTGTGGATTTTAAGATCAAGCTACTTAAGGTTGGTGGGAAAAGATTGAAGCTCACAATCTGGGATACTGCTGGACAAGAGAGATTCAGAACGTTAACAAGCTCTTATTATAGAGGTGCCCAAGGGATCATTCTTGTCTATGATGTCACGCGGAGAGAAACATTCACAAACTTATCCGACGTATGGGCTAAAGAAGTGGAACTCTACTCGACGAATAAGGACTGTGTCAAGATGCTTATTGGCAATAAAGTTGACAGAGAATCTGAAAGGGCTGTGAGCAGAGAGGAGGGAATTGCTCTAGCAAAGGTGCTTGGATCCTATTTTCTTGAATGCAGTGCTAAAACTAGAGAGAATGTGGAGAAATGCTTTGAAGATTTGGCATTGAAGATAATGGAGGCTCCTAGTCTGATTGAAGAGGGTTCCACTGTTGTAAAAAGAAACATTCTGAAGCAGCAAGAGTTCCAGCCTGCATCAACTACAAGTTGCTGCCTTTGA

Protein sequence

MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNADNLAPTIGVDFKIKLLKVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNKVDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIEEGSTVVKRNILKQQEFQPASTTSCCL

Homology

[Close]

BLAST of Cucsat.G12278 vs. ExPASy Swiss-Prot
Match: O49841 (Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-58
Identity = 112/141 (79.43%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 55  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 114
           AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNL DVW KE+ELYSTN++CV+ML+GNK
Sbjct: 69  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQECVRMLVGNK 128

Query: 115 VDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIEEGSTV 174
           VDRESER VSREEGIALAK L   FLECSA+TR+NVE+CFE+LALKIME PSL+EEGS+ 
Sbjct: 129 VDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVPSLLEEGSSA 188

Query: 175 VKRNILKQQ-EFQPASTTSCC 195
           VKRNILKQ+ E Q  + + CC
Sbjct: 189 VKRNILKQKPEHQTNTQSGCC 209

[Close]

BLAST of Cucsat.G12278 vs. ExPASy Swiss-Prot
Match: O23657 (Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.9e-54
Identity = 103/142 (72.54%), Postives = 121/142 (85.21%), Query Frame = 0


Query: 55  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 114
           AGQERFRTLTSSYYRGAQGII+VYDVTRR+TFTNLSD+WAKE++LYSTN+DC+KML+GNK
Sbjct: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIKMLVGNK 128

Query: 115 VDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIEEGSTV 174
           VD+ESERAVS++EGI  A+  G  FLECSAKTR NVE+CFE+L LKI+E PSL  EGS+ 
Sbjct: 129 VDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLTAEGSSG 188

Query: 175 VKRNILKQQEFQPASTTS--CC 195
            K+NI KQ   Q  ST+S  CC
Sbjct: 189 GKKNIFKQNPAQTTSTSSSYCC 210

[Close]

BLAST of Cucsat.G12278 vs. ExPASy Swiss-Prot
Match: Q9SF92 (Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 4.1e-51
Identity = 97/123 (78.86%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 55  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 114
           AGQE+FRTLTSSY+RG+QGIILVYDVT+RETF NL+D+WAKE+ELYSTN DC+KML+GNK
Sbjct: 69  AGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHDCIKMLVGNK 128

Query: 115 VDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIEEGSTV 174
           VDRESER VSREEG+ALAK L   F ECSA+TRENV  CFE+LALKIME PSL+EEGS+ 
Sbjct: 129 VDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVPSLLEEGSSS 188

Query: 175 VKR 178
           VKR
Sbjct: 189 VKR 191

[Close]

BLAST of Cucsat.G12278 vs. ExPASy Swiss-Prot
Match: Q6DHC1 (Ras-related protein Rab-18-B OS=Danio rerio OX=7955 GN=rab18b PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.0e-30
Identity = 66/115 (57.39%), Postives = 84/115 (73.04%), Query Frame = 0


Query: 55  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 114
           AGQERFRTLT SYYRGAQG+ILVYDVT+R+TFT L + W  E+E Y T  D VKML+GNK
Sbjct: 65  AGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN-WLNELETYCTRNDLVKMLVGNK 124

Query: 115 VDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIE 170
           +D+++ R V R EG+  A+     F+E SAKTR+ V+  FE+L  KI++ P L E
Sbjct: 125 IDKDN-REVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTPGLWE 177

[Close]

BLAST of Cucsat.G12278 vs. ExPASy Swiss-Prot
Match: Q5ZLG1 (Ras-related protein Rab-18 OS=Gallus gallus OX=9031 GN=RAB18 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-29
Identity = 68/118 (57.63%), Postives = 83/118 (70.34%), Query Frame = 0


Query: 55  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 114
           AGQERFRTLT SYYRGAQG+ILVYDVTRR+TF  L D W  E+E Y T  D VKML+GNK
Sbjct: 65  AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVKMLVGNK 124

Query: 115 VDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIEEGS 173
           +D+E+ R V R EG+  A+     F+E SAKT + V+  FE+L  KI++ P L E  S
Sbjct: 125 IDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESES 180

[Close]

BLAST of Cucsat.G12278 vs. NCBI nr
Match: KAG7017389.1 (Ras-related protein RABC2a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 284 bits (726), Expect = 2.52e-94
Identity = 143/159 (89.94%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 37  LFTSSELFLNLCKPWFLAAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKE 96
           ++ +  L LNL KPWFLAAGQERFRTLTSSYYRGAQGIILVYDVTRRETF NLSDVWAKE
Sbjct: 66  IWDTDGLILNLFKPWFLAAGQERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWAKE 125

Query: 97  VELYSTNKDCVKMLIGNKVDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFED 156
           VELYSTNKDCVKMLIGNKVDRESERAVSREEG ALAK LGS+FLECSAKTRENVEKCFE+
Sbjct: 126 VELYSTNKDCVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEE 185

Query: 157 LALKIMEAPSLIEEGSTVVKRNILKQQEFQPASTTSCCL 195
           LALKIMEAPSLIE+GSTVVKRNILKQQEFQ ASTT CCL
Sbjct: 186 LALKIMEAPSLIEQGSTVVKRNILKQQEFQAASTTGCCL 224

[Close]

BLAST of Cucsat.G12278 vs. NCBI nr
Match: XP_004137847.1 (ras-related protein RABC2a [Cucumis sativus] >KGN59006.1 hypothetical protein Csa_001955 [Cucumis sativus])

HSP 1 Score: 280 bits (717), Expect = 3.66e-93
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 55  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 114
           AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK
Sbjct: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 129

Query: 115 VDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIEEGSTV 174
           VDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIEEGSTV
Sbjct: 130 VDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIEEGSTV 189

Query: 175 VKRNILKQQEFQPASTTSCCL 195
           VKRNILKQQEFQPASTTSCCL
Sbjct: 190 VKRNILKQQEFQPASTTSCCL 210

[Close]

BLAST of Cucsat.G12278 vs. NCBI nr
Match: KAG7028043.1 (Ras-related protein RABC2a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277 bits (708), Expect = 1.61e-92
Identity = 138/146 (94.52%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 50  PWFLAAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKM 109
           PWFLAAGQERFRTLTSSYYRGAQGIILVYDVTRRETF NLSDVWAKEVELYSTNK+CVKM
Sbjct: 16  PWFLAAGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKM 75

Query: 110 LIGNKVDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIE 169
           LIGNKVDRESERAVSREEGIALAK LGS+FLECSAKTRENVEKCFE+LALKIMEAPSLIE
Sbjct: 76  LIGNKVDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIE 135

Query: 170 EGSTVVKRNILKQQEFQPASTTSCCL 195
           EGSTVVKRNILKQQE QPA T SCCL
Sbjct: 136 EGSTVVKRNILKQQELQPAPTASCCL 161

[Close]

BLAST of Cucsat.G12278 vs. NCBI nr
Match: XP_008442732.1 (PREDICTED: ras-related protein RABC2a [Cucumis melo] >KAA0043972.1 ras-related protein RABC2a [Cucumis melo var. makuwa] >TYK25168.1 ras-related protein RABC2a [Cucumis melo var. makuwa])

HSP 1 Score: 275 bits (704), Expect = 3.49e-91
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 55  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 114
           AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK
Sbjct: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 129

Query: 115 VDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIEEGSTV 174
           VDRESERAVSREEGIALAKVLGS FLECSAKTRENVEKCFE+LALKIMEAPSLIEEGSTV
Sbjct: 130 VDRESERAVSREEGIALAKVLGSCFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 189

Query: 175 VKRNILKQQEFQPASTTSCCL 195
           VKRNILKQQEFQPASTTSCCL
Sbjct: 190 VKRNILKQQEFQPASTTSCCL 210

[Close]

BLAST of Cucsat.G12278 vs. NCBI nr
Match: XP_038905103.1 (ras-related protein RABC2a-like [Benincasa hispida])

HSP 1 Score: 268 bits (685), Expect = 2.71e-88
Identity = 134/141 (95.04%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 55  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 114
           AGQERFRTLTSSYYRGAQGIILVYDVTRRETF NLSDVWAKEVELYSTNKDCVKMLIGNK
Sbjct: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFANLSDVWAKEVELYSTNKDCVKMLIGNK 129

Query: 115 VDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIEEGSTV 174
           VDRESER VSREEGIALAK LGSYFLECSAKTRENVEKCFE+LALKIMEAPSLIEEGSTV
Sbjct: 130 VDRESERVVSREEGIALAKELGSYFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 189

Query: 175 VKRNILKQQEFQPASTTSCCL 195
           VKRNILKQQEFQPA++ SCCL
Sbjct: 190 VKRNILKQQEFQPAASPSCCL 210

[Close]

BLAST of Cucsat.G12278 vs. ExPASy TrEMBL
Match: A0A0A0LGE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G743430 PE=4 SV=1)

HSP 1 Score: 280 bits (717), Expect = 1.77e-93
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 55  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 114
           AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK
Sbjct: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 129

Query: 115 VDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIEEGSTV 174
           VDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIEEGSTV
Sbjct: 130 VDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIEEGSTV 189

Query: 175 VKRNILKQQEFQPASTTSCCL 195
           VKRNILKQQEFQPASTTSCCL
Sbjct: 190 VKRNILKQQEFQPASTTSCCL 210

[Close]

BLAST of Cucsat.G12278 vs. ExPASy TrEMBL
Match: A0A5A7TKX7 (Ras-related protein RABC2a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002940 PE=4 SV=1)

HSP 1 Score: 275 bits (704), Expect = 1.69e-91
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 55  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 114
           AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK
Sbjct: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 129

Query: 115 VDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIEEGSTV 174
           VDRESERAVSREEGIALAKVLGS FLECSAKTRENVEKCFE+LALKIMEAPSLIEEGSTV
Sbjct: 130 VDRESERAVSREEGIALAKVLGSCFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 189

Query: 175 VKRNILKQQEFQPASTTSCCL 195
           VKRNILKQQEFQPASTTSCCL
Sbjct: 190 VKRNILKQQEFQPASTTSCCL 210

[Close]

BLAST of Cucsat.G12278 vs. ExPASy TrEMBL
Match: A0A1S3B6E7 (ras-related protein RABC2a OS=Cucumis melo OX=3656 GN=LOC103486521 PE=4 SV=1)

HSP 1 Score: 275 bits (704), Expect = 1.69e-91
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 55  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 114
           AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK
Sbjct: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 129

Query: 115 VDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIEEGSTV 174
           VDRESERAVSREEGIALAKVLGS FLECSAKTRENVEKCFE+LALKIMEAPSLIEEGSTV
Sbjct: 130 VDRESERAVSREEGIALAKVLGSCFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 189

Query: 175 VKRNILKQQEFQPASTTSCCL 195
           VKRNILKQQEFQPASTTSCCL
Sbjct: 190 VKRNILKQQEFQPASTTSCCL 210

[Close]

BLAST of Cucsat.G12278 vs. ExPASy TrEMBL
Match: A0A6J1KU45 (ras-related protein RABC2a-like OS=Cucurbita maxima OX=3661 GN=LOC111498270 PE=4 SV=1)

HSP 1 Score: 265 bits (677), Expect = 2.16e-87
Identity = 133/141 (94.33%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 55  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 114
           AGQERFRTLTSSYYRGAQGIILVYDVTRRETF NLSDVWAKEVELYSTNK+CVKMLIGNK
Sbjct: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 129

Query: 115 VDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIEEGSTV 174
           VDRESERAVSREEGIALAK LGS+FLECSAKTRENVEKCFE+LALKIMEAPSLIEEGSTV
Sbjct: 130 VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 189

Query: 175 VKRNILKQQEFQPASTTSCCL 195
           VKRNILKQQE QPA T SCCL
Sbjct: 190 VKRNILKQQELQPAPTASCCL 210

[Close]

BLAST of Cucsat.G12278 vs. ExPASy TrEMBL
Match: A0A6J1FET8 (ras-related protein RABC2a-like OS=Cucurbita moschata OX=3662 GN=LOC111443418 PE=4 SV=1)

HSP 1 Score: 265 bits (677), Expect = 2.16e-87
Identity = 133/141 (94.33%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 55  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 114
           AGQERFRTLTSSYYRGAQGIILVYDVTRRETF NLSDVWAKEVELYSTNK+CVKMLIGNK
Sbjct: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 129

Query: 115 VDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIEEGSTV 174
           VDRESERAVSREEGIALAK LGS+FLECSAKTRENVEKCFE+LALKIMEAPSLIEEGSTV
Sbjct: 130 VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 189

Query: 175 VKRNILKQQEFQPASTTSCCL 195
           VKRNILKQQE QPA T SCCL
Sbjct: 190 VKRNILKQQELQPAPTASCCL 210

The following BLAST results are available for this feature:

BLAST of Cucsat.G12278 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49841	1.2e-58	79.43	Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1	[more]
O23657	3.9e-54	72.54	Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1	[more]
Q9SF92	4.1e-51	78.86	Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1	[more]
Q6DHC1	3.0e-30	57.39	Ras-related protein Rab-18-B OS=Danio rerio OX=7955 GN=rab18b PE=2 SV=1	[more]
Q5ZLG1	1.2e-29	57.63	Ras-related protein Rab-18 OS=Gallus gallus OX=9031 GN=RAB18 PE=2 SV=1	[more]

BLAST of Cucsat.G12278 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017389.1	2.52e-94	89.94	Ras-related protein RABC2a [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_004137847.1	3.66e-93	100.00	ras-related protein RABC2a [Cucumis sativus] >KGN59006.1 hypothetical protein Cs...	[more]
KAG7028043.1	1.61e-92	94.52	Ras-related protein RABC2a, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008442732.1	3.49e-91	98.58	PREDICTED: ras-related protein RABC2a [Cucumis melo] >KAA0043972.1 ras-related p...	[more]
XP_038905103.1	2.71e-88	95.04	ras-related protein RABC2a-like [Benincasa hispida]	[more]

BLAST of Cucsat.G12278 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGE4	1.77e-93	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G743430 PE=4 SV=1	[more]
A0A5A7TKX7	1.69e-91	98.58	Ras-related protein RABC2a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3B6E7	1.69e-91	98.58	ras-related protein RABC2a OS=Cucumis melo OX=3656 GN=LOC103486521 PE=4 SV=1	[more]
A0A6J1KU45	2.16e-87	94.33	ras-related protein RABC2a-like OS=Cucurbita maxima OX=3661 GN=LOC111498270 PE=4...	[more]
A0A6J1FET8	2.16e-87	94.33	ras-related protein RABC2a-like OS=Cucurbita moschata OX=3662 GN=LOC111443418 PE...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 154..176 score: 43.21 coord: 37..53 score: 29.45 coord: 15..36 score: 52.24 coord: 55..77 score: 50.87 coord: 119..132 score: 40.01
None	No IPR available	SMART	SM00177	arf_sub_2	coord: 1..180 e-value: 0.0062 score: -1.7
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 20..210 e-value: 2.4E-4 score: 13.0
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 12..179 e-value: 5.3E-28 score: 109.0
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 15..179 e-value: 5.1E-92 score: 321.7
None	No IPR available	PANTHER	PTHR24073:SF1138	SMALL MONOMERIC GTPASE-RELATED	coord: 1..209
None	No IPR available	PANTHER	PTHR24073	DRAB5-RELATED	coord: 1..209
None	No IPR available	PROSITE	PS51419	RAB	coord: 10..210 score: 31.374886
None	No IPR available	PROSITE	PS51420	RHO	coord: 8..179 score: 9.745193
None	No IPR available	CDD	cd01863	Rab18	coord: 15..176 e-value: 1.17336E-94 score: 271.107
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 17..180 e-value: 3.3E-13 score: 49.0
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 16..177 e-value: 2.8E-53 score: 179.8
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 7..210 score: 16.393459
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 15..170 e-value: 6.6E-27 score: 92.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 5..207 e-value: 9.1E-62 score: 209.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G12278.T1	Cucsat.G12278.T1	mRNA
Cucsat.G12278.T4	Cucsat.G12278.T4	mRNA
Cucsat.G12278.T5	Cucsat.G12278.T5	mRNA
Cucsat.G12278.T6	Cucsat.G12278.T6	mRNA
Cucsat.G12278.T3	Cucsat.G12278.T3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0012505	endomembrane system
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding