Cucsat.G12151 (gene) Cucumber (B10) v3

Overview
NameCucsat.G12151
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionlarge ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X3
Locationctg1837: 1156657 .. 1164605 (-)
RNA-Seq ExpressionCucsat.G12151
SyntenyCucsat.G12151
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GACGTGTATAAATGCAAAATTATGAGAGTTGTAGCACAAGTAAAGAGGATGGTAGCTAACTTAGATACAAATAAAGATATATTTCCGAAGAGAAATTGGGGCCTCACATTGTATAGATAAGGTTCCAATTCCAATTACTTGCTTTATTCCACGTATTGTCATCTCTCACAAAGAGTGAAGAGACAAAAATGGCAGAAGCTGGGCACCTTGTTACAACAGCAAGAAATATCAACTCCATTTCAAGTGCATTCAACAAAGCTGCACCTAAATCTTCAACTCAAACATTCAAAATCAAAGCTTCTTCAAAGAGAAACGACATCTCCTTGGTAAAACACAATCTCCTACTTGTCATCTTTCAGATTTCTGCAGACATTCCCTCTTCTATTCATACAATTCTCTTCCATCTAAAGATTTTTTTTTTTTTTTCATTTTTCTTTTTTAAATGAAGAGAAGAAGCAACAAAACAACAAGGCGTCTAATTACAATATCAACAGCTGGAAGCAGATGGCAAGGAAAATGGACCGTTGATTACATGCTTTCCCTGCAAGACCTCAACTTAGAAGACTTGGTAGAAGATGAAAACAATAATGCACATGTCTTCATCAATCTCTGTATTGAGAAGGTAATTTCAATACTTTTCTCTCTCCAAAACTCTATTTTATGTATAACAACATTAATGAACGCACCTTGAATCTAACTCCAACAACATCTAACGATGGATTTGATCCATCTCCAATAGAATCTCAGTGTGGACTATTATTGGAGAGACCAAGATGGGTAAAGATATATTCTCCAACTTGTTTCTTTTTCTTTTTTCATTTTTTGTGGAGGAGCCTGCTGAAGAATCCGTTTCTCAGCTCAAGAGAATAGACATCGAACAATCACTTTTTAAGCAATTTAAAGAATTAAAACAGCACAAAATGAGAGCAATTCTACACAAAATGCTCTATTCGCTAACTATATCACTAACAGTTTCCCTTTGTTTTTACCAGCATGCAAGTTTCGGGTTCACTGTGGATGGAAGGATCAACACATCATTCACTCGAAAGTGTTGTGCCTGTTCTTCGCCATACTGCAGAGAGGTCACTGTTTAAATAATAAAAAAACGATTGAATCACATATGGCTTATTCTTAGTCATCCGTATCACATCTATCCATGAAGTTTCAATTTATAACACTCCAACCAGTGTTCTAACACACAATTATCGTAATCAAACAGATCAATGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAAATTCATCTTCCAGATATTGGAGGCGACGATCCTTCGGTAAGTTTTTGCATTTCTTCACTTCAACTACTTAGAAGTATGACAACCATCTTAAATTTAACAGGTAATTTATGTTAAACCCGGACTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACCAAGGTGAGAAGTTAGCAAACAGAATTAGCCTACTTATCAATAACTATTAATATAAAAAAAAACACTGCCAAGATTCAATTGGAATAAGTTAACAAAACAGCCTACCTCTTCCAGGACACTTGCTCAGAGATGTGTGAGAAATCTCAACCCACAGTGCAATGTAAGTGGTCAAGTGTCACTGACTCAAGCTTCCACTTGCAATTAACGTTGGGACTAATTGAGAAATGTTCATTGCAGATATTGGTGCACAGAACGCTGCATCTATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAGAAAATCTAATTCATAGATAACAAGCAATATGTATATATATTGATGGTTGCTCATCTAGGCTTCCGAAAACATGACTGCCCATTGATAAAATTAAATTGTTTATTAGTTTCTAAGTCAATATCATAATGGAAAAGTGGTTGACACCTGCAACTAAAATTGGTTTTGCCTGATCACCTATATTTCTCCTTTAAGTAGAAGAAGACTAATAAGAAATTATCCCTTTGACCAAACCATTCAACATAAGTTCAAAAATACATCCCGTAGTATATCAATCCCCCACCCCCCGACCCTAAAAAAAAAAATCATATATCGGCAGCAAGGAAATTTCCAGATAGTGACACCTGCATGCATGTAGAAAAGAAAAGAAAAAAAAAAAGAGGGAAACTTAGTAGTCAAGCAATTGTCAAGGCATATCTACTCCAGAGGCTGGAAGTTCAAATCCTCCCACCCTGTGATACATTATTCTCAAAACTATATCAAAATGGGAAGATAATCATAAAGATTCTGCCTACCTTCTCCCCAAGTTTAAATGCTGGTAGACCCTTGTATGGGCACATACTGCACCGAAAAGCATCTCCCAGGCCACACTGCAAGTTGTATTAACGTTAACATGTAGAACAGATAAATAATAAGGTGGATGAGTTGCAAGTGAAGAGCCAAAGTAAAAAAGACAGAACAGAGGTACAGCACTCATGGAAGAATGTCCATAAAAACACAAGGATAACCGACACTTTATGCCATTTCATATATCATAAAGCAAAAAACTATCCATAAACAAAAAACTGCACTCGATAACTATGATTCCATTTATTTTTTTTTCTTACGTTGCCACATGCAGATTGAGGGTTTTCCAACAAATCTGAAGTCAATCCCAGTTTCTCTACTTTCTCCTCTGCTTCGGCCCTACCACAAGTGCAGTTCTTGCAAGCTTTCCTTGTGCCTCTAACTTCACAATCACCAACTGTGCAACAAATTAAATAATAAACCGTAATCAATACTACCTTCCACTAAATAAAATCACAGTTAAATTACTAGTTTAATCTCAACTTTCAAAGTGTCTATTAGATCCTAAAGTCTGAAATTTCAAACTTGTGTCTAATAAAGTTTCTAAACTTTCAACTTTCCCCCTGATCCTTTCAATTTTGTGTCTAAATGATCCTAAACTTCCAATTTTATATGTAATAAATCTCTAATATATTAAAAAGAAAATTTTAAAACTAATAGATGATTGATCTTTTAGGTTAAAAGTTGAATTTTATGTTTAGTACAACTTTACAATCTAAACATATGTGATTTTTTTAAGAAAAATATGTCTAGGACCTATTACAAAACTGAAATTTAGAGATCCTATTGGGGAAATAAAGTTGAAGTTTAAGATCTATGAGATAATGGAACTTAATGGACAAAATGGAAAGTTTAAAAATCTGTTAGGTGATTTTTAAAGTTCAAGGACCTATTGGCACAAAATGAAAGCACAGACCTACGAGATATTTTTAAGAGTTCAGTGATCAAAGTGATCGAATTGACACGGACGTGAAAGTTAAGCAAATAACCTTATAACTTACCCAAGTTTAACATATAATATATGACAAGCCTTTCATTGTTTACCTGGTAGCTGAGGTTTCTTCAAATCCTCCTCAGTCAATAAACTATCTTCATCGATCAAATCAGAATCATCATCAAGCTGAATCCTTGGTAGAATTTTTGTAGGCTTCTTAATAGCTGTTGAAGGATATGCTGAAGAATATTCCCTCGTTTTGTTTATTGACCAAAGTTGTGTATTTATACAAGGGTAATTACCCAAAATAACTAAGCCTACTTTATTTACATTAACATCATTACCCAAATTAACTAAGCCTAATTTATTTACATTAATACCCTCCCTCAAACTCAAGGTGGTAGAGTAGCGATCAACTTGAGTTTGGTAAGTAAGTGACAAAATCGATTAGATGGCAAGGCTTTGGTGAAGATATCCGCAGGTTGTTCAATAGTAGAAACAGAACGTAAGAGGAGGGTGTTGCTTAAGAGGTGGTGACGAACAAAGTGACAGTCATTTTCAATGTGTTTTGTACGTTCATGAAACACATCATTGTGAGCAATCTGAATGGCACTACGATTGTCACAATGGAGGAGGGTAGGACCCTGTTGAGGGACACCCATATCGGCAAGGAGCCACCGAAGCCATATAAGTTCAGCTGTAGCATCAGCCAGAGCACGATATTCAGATTCCGTACTGGAACGAGATATAACACTTTGTTTCTTACTACGCCATGAGATGAGAGAATCACCTAAGTAAAAACAGTATCCTGTAGTGGATCGTCGATCAGTAGGATCCCCCGCCCAATCAGCATCAGAATATCCCGACAACACAAGGGAAGACTGAGATGAGAATTGAAGACCATGTCCCAAGGTGCCTTTGACATAGCGAAGTATGCGTAGAACAGCAGTGAAATGAATTGTTCGAGGAGCAGCCATAAATTGACTGACAATATGAACAGCATATGCAATATCTGGGCGAGTTACTGTTAGGTATATAAGACTGCCAACAAGTTGCCGATACAAGCTTGCATCGTCAAGAGGAACACCATCAAACGAAGTTAGATGGACATGAGGATCTAACGGTGTTGGAGATGTGGTGGAGTCTGTAATTCCTGAGCGTGCTATTAGATCAGATGCATATTTCGCTTGAGATAACAGATAACCATCTGAACGGGGAGAGACTTCAAGACCGAGAAAGTAATTGAGAGATCCAAGGTCTTTCATCTCAAAATGTTGACCAAGATATTGTTGTAGGTCGGATATGGCCTGTTGATCATTACCAGTAATAATCATATCATCAACATAAAGAAGGAGAAGAACAATACCATGAGTTGTCTGTCGTGTAAAAAGGGCATTGTCGTGAGAGCTGGAGGTAAATCCAAGTTGAGTAATGGTGGAGCTAAACGTGGCAAACCAAGCTCGTGGAGCCTGTTTTAGACCGTATAGAGCGCGACGAAGGAGACACACCTTGTTGGGAGGAGGAGAAGTTCCCTGAGGTGGCTTCATATACACTTCTTCAGATAGGTTGCCGTTAAGAAATGCATTTTTGACATCCATCTGAAAAAGAGGCCACTGTTTGGCAGCAGCAACAGCTAACAAGCTGCGAACAGATGTCATCCGGGCAACAGGGGCAAATGTTTCTTCATAGTCAATCCCATATTCTTGTGAGTATCCTTTTGCAACAAGCCGAGCTTTATAACGTTCAATAGTTCCATCAGAGTGAGTTTTGATTTTGTAAATCCATTTGCAACCAATGGGTCTTTTACCGGGAGGTAAATCAACATAGTCCCAAGTGTGCGTCTTTTCAAGAGCCTGTAATTCTTCATCCATTGCTTTCTGCCATACTGGGTTAATACTGGCCTCTTGATAAGAGGTGGGTTCAACAAGGGAAACAATGGTAGAAAAACAATGGTAATCAGTGAGATGAGGGGGAGGTTCTCTTACCCGGGTAGAGCGACGAAGAGGAGTAGCAGGTGGCGATTCAGGAACATCATCGGAGACAGACGGTGGATCCAGATTTGCAGTAGCAGGTGAAGATTGTGCAAGCTCAGTATCCAAGGTGGGTTCAGAGAGAGGAAAAAGGTCAACAGATGTGTTTGTAAAGAAAGATTGAGGACTAGAGAAGGAGGTGTGGAAGGAGGACAAACGAGAGAACATAGTGTGTTCCCAAAAAGTGACATGTCGAGATATCCGGAGTCGGTTGGAAAGAGGGTCCCAACAACGAAATCCTTTGTGTTCGGTACCATAGCCAAGGAAGCAACAGAGACGGGCACGTGGTTCAAGTTTATTGTGTTCATGAGGATGTAACAGAACGAAGCAGGCACTACCAAAAACTTTGAGTTTAGAATAGTCGGGAGAAATACCATATAGTTTTTCGAACGGAGAGGTATTTTGAAGGACAGAGGAAGGGAGACGATTGATTGTATATACTGATGTAAGGGCAGCTTCACCCCAGAATTTTTCTGGACAAGAGGCAGAAAGAAGGAGGGCACGTACTGAGTCAAGAATGTGACGATGTTTGCGCTCAGCACGTCCATTTTGTTGAGAGGTATGAGGGCAAGAGCGCTGAACAATAGTGCCCTGTTGGGAAAGAAAAGAAAGAAGGATGGAATCTTTATATTCCAAAGCATTATCAGTGCGAAGAATTTTGATGGGAGAGGAAAATTGAGTGCGAATCATGTTAGCAAACTCAATATATGTGCGAGATAATTCAGAACGATGTTTTAGAAAGTAAATCCATGTAAATCGAGAGTAGTCATCAATGAATAAAACATAGTAGCGATAACCATGAACAGTAGTAATTGGGGCAGGACCCCAAATATCAGAATGCACTAAATCAAAAGGTTTATCACAATTAGAGATGGATTGAGAAAAAGATAAGGCAGGTTGTTTAGCAAGTTTGCAATTCAAACAATTAAAAGGAACAAATTTAGTAAGATTAGTCAAATTGTTAACAGAAATTAAATGACGAAGTTTTTCAGAGGAAGCATGACCAAGACGAAGATGCCACTGATATGTGTCAGAATCAGTGACCGAAGCAGAGATGGAAGAAGGAGATGAAATCCGAAGTGATGTGAGCTCAAACAATCTTCCCACTTTGCGACCCGTTCCAATCGTCTGTCCCATCTGCGGATCCTGAACCTGACAACCATTGGGAGAAAATGAAACATTTAAGCCCAGATCACATAATTGACCAACAGACACTAGATTAAAGGTCAGGTTAGGAACACAGTAAGTATGGGGAAGATGTACACTGGGAGTATCAATGGTACCAGTATGAGAGATGTTCATACAATTACCATCAGCAGCATAAATAGGAGGTAAAGATTTTGTAGGGCTAGAAGTAGACATAAGAGAAGAGTCAGAGGTCATATGATTACAACAGGCAGAATCAAGAAGCCATCGATTACCTGATGAAACAGTCAGAGCGGAGGATGATGAAATTAGTTGATTCAATAAGCTCTGAAGATCACTTATCTGAATGAGGGATGAATCATCCGAGGTCGCAGCAACAACAGATGAGGAACCATGTTTGGTAAAAATTTTCTCTTTTGTGGAAGTGCTAGGAGGTCGGGGTGGTCTGGTAGGGCAGTTATCCAGAATGTGGCCATGTTTATGGCAGTACCTGCACTCTATTTTAGGACAGTTACTAAATTTGTGACCAGAGAGCTTACAATTCTTACAAAACATATTTGCGGCTCTGTTGGGAGTGTATGTGCTAGCAAGGACAACATCAGATTGTTTAGTAGAGTTGATGCCAAGACGCTTTTCTTCAAACAGAATTTCTTGAATAGCTGCATCTAATGAGGTAAGGGATTCCGGTGTAGTAAAGCAACTCTAACAGATTCATATTCTGGACGTAATCCCATAAGGACTTTAATAAGGCGAAGATGATCTTTGCTGATGTTCGCTTGGTCAAGTTGGGTCCAAATGGGTTGAAGAACTGCCAAATATTCATTAACAGACTAACCAATATCTTGATTTAGATTTACAAGTGTACTGTGCAGTTGGTAATAATGGGCTAAACCAATAGACTTGAAGCGTGTAGACAAAAAATCCCATAATATTTTAGCATCATCAAAGGCATCAAACTGTGCATGTATAGCGGGAATAGAGGTGTTACCAAGCCAGGTGATAATTTGATGATTTTTACTGTCCCAATCTTCGAGACGTTCAATGAATGTGTTATCCCCTTCCTTTGCCGTTGGTTTGGTGATGTCGCCAGTTACAATGCGCCATAGTTTTCTTCCAATAAGAAAACTTTTCATTTGATTTGCCCATGTGATATAATTTGTACCATCAAGTATTGTAGAAATGGGTCTAAAGATATGGTCTCTCTCCATTTTGATTTGAGTTTTACTGTATTTGGCGGCTGAGATTTGCCTTGACGGAGACAGAGATTGCGCAGCAGGTCTTCACGAACGGAGAGAAAAGGAATGGGCACGGCGACAGATCTAAAGCTCGGCTGCGGATGGAGACATCCAAGATGACGGATCTGGGTTGAAGAGCGGCGGCGAAGGAATGGGCGGCGATGCTTCACGAACCGACCGACGATTGCAGCGACGGATCTGGGTTGCGGAGCGGCGGCGAAGGAATGGGCACGACGACAGATCTAGAGCTCGGCTGCGGATGGAGACATCCAAGATGACGGATCTGGGTTG

Coding sequence (CDS)

ATGGCAGAAGCTGGGCACCTTGTTACAACAGCAAGAAATATCAACTCCATTTCAAGTGCATTCAACAAAGCTGCACCTAAATCTTCAACTCAAACATTCAAAATCAAAGCTTCTTCAAAGAGAAACGACATCTCCTTGAGAAGAAGCAACAAAACAACAAGGCGTCTAATTACAATATCAACAGCTGGAAGCAGATGGCAAGGAAAATGGACCGTTGATTACATGCTTTCCCTGCAAGACCTCAACTTAGAAGACTTGGTAGAAGATGAAAACAATAATGCACATGTCTTCATCAATCTCTGTATTGAGAAGCATGCAAGTTTCGGGTTCACTGTGGATGGAAGGATCAACACATCATTCACTCGAAAGTGTTGTGCCTGTTCTTCGCCATACTGCAGAGAGAGCCAACAGGGAAATTCATCTTCCAGATATTGGAGGCGACGATCCTTCGAGATTGCGCAGCAGGTCTTCACGAACGGAGAGAAAAGGAATGGGCACGGCGACAGATCTAAAGCTCGGCTGCGGATGGAGACATCCAAGATGACGGATCTGGGTTGA

Protein sequence

MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITISTAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCRESQQGNSSSRYWRRRSFEIAQQVFTNGEKRNGHGDRSKARLRMETSKMTDLG
Homology
[Close]
BLAST of Cucsat.G12151 vs. ExPASy Swiss-Prot
Match: Q9C5M1 (Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g19800 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.5e-18
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 0 

Query: 49  SNKTTRRLITISTAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASF 108
           S+KT +RLIT+S +  +W G W   Y +SL+DL L+DLVED   N+ V ++L +++HAS 
Sbjct: 49  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 108

Query: 109 GFTVDGRINTSFTRKCCACSSPYCR 134
           G +VDGRI TS  RKC  CSS Y R
Sbjct: 109 GLSVDGRIMTSIARKCSICSSLYPR 133

[Close]
BLAST of Cucsat.G12151 vs. NCBI nr
Match: XP_011651803.2 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 [Cucumis sativus] >KAE8650945.1 hypothetical protein Csa_002331 [Cucumis sativus])

HSP 1 Score: 263 bits (671), Expect = 5.00e-86
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60
           MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS
Sbjct: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60

Query: 61  TAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120
           TAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 121 TRKCCACSSPYCRE 134
           TRKCCACSSPYCRE
Sbjct: 121 TRKCCACSSPYCRE 134

[Close]
BLAST of Cucsat.G12151 vs. NCBI nr
Match: XP_031738565.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Cucumis sativus] >KAE8650911.1 hypothetical protein Csa_001037 [Cucumis sativus])

HSP 1 Score: 246 bits (629), Expect = 1.17e-79
Identity = 127/134 (94.78%), Postives = 130/134 (97.01%), Query Frame = 0 

Query: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60
           MAEAGHLVTTARNINSISS+FNKAAPK STQTFKIKASSKRNDISLR SNKTTRRLITIS
Sbjct: 1   MAEAGHLVTTARNINSISSSFNKAAPKPSTQTFKIKASSKRNDISLR-SNKTTRRLITIS 60

Query: 61  TAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120
           TAGSRWQGKWT DY+LSL+DLNLEDLVEDEN NAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TAGSRWQGKWTCDYLLSLRDLNLEDLVEDENKNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 121 TRKCCACSSPYCRE 134
           TRKCCACSSPYCRE
Sbjct: 121 TRKCCACSSPYCRE 133

[Close]
BLAST of Cucsat.G12151 vs. NCBI nr
Match: XP_008461873.1 (PREDICTED: uncharacterized protein LOC103500366 [Cucumis melo] >KAA0052757.1 DUF177 domain-containing protein [Cucumis melo var. makuwa] >TYK04199.1 DUF177 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 239 bits (609), Expect = 1.33e-76
Identity = 121/134 (90.30%), Postives = 126/134 (94.03%), Query Frame = 0 

Query: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60
           MAEAG LVTT RNINSISS+FNK APKS TQTFKIKASSKRNDISLRRSNKTTRRLITIS
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60

Query: 61  TAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120
           T+GSRWQGKWT DY+LSL+DLNLEDLVEDE+ NAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 121 TRKCCACSSPYCRE 134
           TRKCC CS PYCRE
Sbjct: 121 TRKCCTCSLPYCRE 134

[Close]
BLAST of Cucsat.G12151 vs. NCBI nr
Match: XP_038906104.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 225 bits (574), Expect = 2.74e-71
Identity = 118/135 (87.41%), Postives = 126/135 (93.33%), Query Frame = 0 

Query: 1   MAEAGHLVTTARNINSISSAFNKAA-PKSSTQTFKIKASSKRNDISLRRSNKTTRRLITI 60
           MAE GHLVT ARNINSISS+FNKAA PK +TQTFKI ASSKRNDISLRRSNKT+RRLITI
Sbjct: 1   MAETGHLVT-ARNINSISSSFNKAAAPKYATQTFKITASSKRNDISLRRSNKTSRRLITI 60

Query: 61  STAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTS 120
           ST+GSRWQGKWT DY+LSL+DLNLEDLVEDE+ NA VFINLCIEKHASFGFTVDG+INTS
Sbjct: 61  STSGSRWQGKWTSDYLLSLRDLNLEDLVEDEHKNARVFINLCIEKHASFGFTVDGKINTS 120

Query: 121 FTRKCCACSSPYCRE 134
           FTRKCC CSSPYCRE
Sbjct: 121 FTRKCCTCSSPYCRE 134

[Close]
BLAST of Cucsat.G12151 vs. NCBI nr
Match: XP_022983270.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4 [Cucurbita maxima])

HSP 1 Score: 220 bits (560), Expect = 3.65e-69
Identity = 115/135 (85.19%), Postives = 123/135 (91.11%), Query Frame = 0 

Query: 1   MAEAGHLVTTARNINSISSAFNK-AAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITI 60
           MAEAGHLV  A N+NSISS+FNK AAPK +TQTFKIKASSKRNDISLRRS+K  RRLITI
Sbjct: 1   MAEAGHLVA-AGNVNSISSSFNKTAAPKFATQTFKIKASSKRNDISLRRSSKPPRRLITI 60

Query: 61  STAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTS 120
           STAGS WQGKW+ DY+LSLQD NLEDLVEDE+ NAHVFINLCIEKHASFGFTVDG+INTS
Sbjct: 61  STAGSMWQGKWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTS 120

Query: 121 FTRKCCACSSPYCRE 134
           FTRKCC CSSPYCRE
Sbjct: 121 FTRKCCTCSSPYCRE 134

[Close]
BLAST of Cucsat.G12151 vs. ExPASy TrEMBL
Match: A0A0A0L9K5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G703170 PE=4 SV=1)

HSP 1 Score: 259 bits (663), Expect = 7.93e-86
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0 

Query: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60
           MAEAGHLVTTARNINSISS+FNKAAPK STQTFKIKASSKRNDISLRRSNKTTRRLITIS
Sbjct: 1   MAEAGHLVTTARNINSISSSFNKAAPKPSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60

Query: 61  TAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120
           TAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 121 TRKCCACSSPYCRE 134
           TRKCCACSSPYCRE
Sbjct: 121 TRKCCACSSPYCRE 134

[Close]
BLAST of Cucsat.G12151 vs. ExPASy TrEMBL
Match: A0A5D3C1F8 (DUF177 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00270 PE=4 SV=1)

HSP 1 Score: 239 bits (609), Expect = 6.42e-77
Identity = 121/134 (90.30%), Postives = 126/134 (94.03%), Query Frame = 0 

Query: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60
           MAEAG LVTT RNINSISS+FNK APKS TQTFKIKASSKRNDISLRRSNKTTRRLITIS
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60

Query: 61  TAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120
           T+GSRWQGKWT DY+LSL+DLNLEDLVEDE+ NAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 121 TRKCCACSSPYCRE 134
           TRKCC CS PYCRE
Sbjct: 121 TRKCCTCSLPYCRE 134

[Close]
BLAST of Cucsat.G12151 vs. ExPASy TrEMBL
Match: A0A1S3CFK7 (uncharacterized protein LOC103500366 OS=Cucumis melo OX=3656 GN=LOC103500366 PE=4 SV=1)

HSP 1 Score: 239 bits (609), Expect = 6.42e-77
Identity = 121/134 (90.30%), Postives = 126/134 (94.03%), Query Frame = 0 

Query: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60
           MAEAG LVTT RNINSISS+FNK APKS TQTFKIKASSKRNDISLRRSNKTTRRLITIS
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60

Query: 61  TAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120
           T+GSRWQGKWT DY+LSL+DLNLEDLVEDE+ NAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 121 TRKCCACSSPYCRE 134
           TRKCC CS PYCRE
Sbjct: 121 TRKCCTCSLPYCRE 134

[Close]
BLAST of Cucsat.G12151 vs. ExPASy TrEMBL
Match: A0A0A0L9P4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656510 PE=4 SV=1)

HSP 1 Score: 230 bits (586), Expect = 6.72e-73
Identity = 126/172 (73.26%), Postives = 130/172 (75.58%), Query Frame = 0 

Query: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSN---------- 60
           MAEAGHLVTTARNINSISS+FNKAAPK STQTFKIKASSKRNDISL + N          
Sbjct: 1   MAEAGHLVTTARNINSISSSFNKAAPKPSTQTFKIKASSKRNDISLVKHNLLLVIFQISA 60

Query: 61  ----------------------------KTTRRLITISTAGSRWQGKWTVDYMLSLQDLN 120
                                       KTTRRLITISTAGSRWQGKWT DY+LSL+DLN
Sbjct: 61  DIPSSIHTFLFHLMIFSFSSLNEAQIRNKTTRRLITISTAGSRWQGKWTCDYLLSLRDLN 120

Query: 121 LEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCRE 134
           LEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCRE
Sbjct: 121 LEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCRE 172

[Close]
BLAST of Cucsat.G12151 vs. ExPASy TrEMBL
Match: A0A6J1J5E3 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111481900 PE=4 SV=1)

HSP 1 Score: 220 bits (560), Expect = 1.77e-69
Identity = 115/135 (85.19%), Postives = 123/135 (91.11%), Query Frame = 0 

Query: 1   MAEAGHLVTTARNINSISSAFNK-AAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITI 60
           MAEAGHLV  A N+NSISS+FNK AAPK +TQTFKIKASSKRNDISLRRS+K  RRLITI
Sbjct: 1   MAEAGHLVA-AGNVNSISSSFNKTAAPKFATQTFKIKASSKRNDISLRRSSKPPRRLITI 60

Query: 61  STAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTS 120
           STAGS WQGKW+ DY+LSLQD NLEDLVEDE+ NAHVFINLCIEKHASFGFTVDG+INTS
Sbjct: 61  STAGSMWQGKWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTS 120

Query: 121 FTRKCCACSSPYCRE 134
           FTRKCC CSSPYCRE
Sbjct: 121 FTRKCCTCSSPYCRE 134

The following BLAST results are available for this feature:
BLAST of Cucsat.G12151 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9C5M12.5e-1851.76Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic O... [more]
BLAST of Cucsat.G12151 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011651803.25.00e-86100.00large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i... [more]
XP_031738565.11.17e-7994.78large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [... [more]
XP_008461873.11.33e-7690.30PREDICTED: uncharacterized protein LOC103500366 [Cucumis melo] >KAA0052757.1 DUF... [more]
XP_038906104.12.74e-7187.41large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [... [more]
XP_022983270.13.65e-6985.19large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i... [more]
BLAST of Cucsat.G12151 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9K57.93e-8698.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G703170 PE=4 SV=1[more]
A0A5D3C1F86.42e-7790.30DUF177 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A1S3CFK76.42e-7790.30uncharacterized protein LOC103500366 OS=Cucumis melo OX=3656 GN=LOC103500366 PE=... [more]
A0A0A0L9P46.72e-7373.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656510 PE=4 SV=1[more]
A0A6J1J5E31.77e-6985.19large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044985Large ribosomal RNA subunit accumulation protein YceD homologue 2, chloroplasticPANTHERPTHR37734LARGE RIBOSOMAL RNA SUBUNIT ACCUMULATION PROTEIN YCED HOMOLOG 2, CHLOROPLASTICcoord: 1..136

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G12151.T13Cucsat.G12151.T13mRNA
Cucsat.G12151.T15Cucsat.G12151.T15mRNA
Cucsat.G12151.T12Cucsat.G12151.T12mRNA
Cucsat.G12151.T6Cucsat.G12151.T6mRNA
Cucsat.G12151.T4Cucsat.G12151.T4mRNA
Cucsat.G12151.T5Cucsat.G12151.T5mRNA
Cucsat.G12151.T3Cucsat.G12151.T3mRNA
Cucsat.G12151.T1Cucsat.G12151.T1mRNA
Cucsat.G12151.T11Cucsat.G12151.T11mRNA
Cucsat.G12151.T8Cucsat.G12151.T8mRNA
Cucsat.G12151.T7Cucsat.G12151.T7mRNA
Cucsat.G12151.T2Cucsat.G12151.T2mRNA
Cucsat.G12151.T14Cucsat.G12151.T14mRNA
Cucsat.G12151.T10Cucsat.G12151.T10mRNA
Cucsat.G12151.T9Cucsat.G12151.T9mRNA