Cucsat.G12143 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G12143
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	60S ribosomal protein L6
Location	ctg1837: 1031730 .. 1034302 (-)
RNA-Seq Expression	Cucsat.G12143
Synteny	Cucsat.G12143

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCAAATTCTCAGAAACTCATCAATGGCGCCGAAGACAGCAAGAGTTAGCCGAAACCCCGATCTCATTCGAGGGGTTGGCAAATACTCGAGGTCCAAGATGTACCACAAGCGAGGTCTCTGGGCAATCAAGGCCAAAAATGGAGGTGTCTTCCCTCGCCACGATGCCAAGCCTAAGGCCGAAGCTCCAGCTGAAAAGCCGCCGAAATTTTACCCTGCCGACGATGTTAAGAAACCCATTGTCAACAAACGTAAAGCTAAGCCCACCAAACTTAGGTAGATATTTCGCAATGTTCTTTCTTTACATCTGATATATAGTTCCCTGTTTTCGAACCTATATTGTATGCTATGGTTGGGAAATTGGGGAATTGGTGTTAACTGTGGAATGAATTAAGTAAAATGTCTTGTGTATTTGTGTTTTCTTTTTCTGGGTAAGGATTATTTTTTTTATTAATCGAGGAAAATTTGAGTTCATGCTGTAGCTGCGAATAAAGGGGGAATTTTTACACATAGGTGACTGCCATAATAGATGGATTTATTTCACACTTGATTTGAGTTTTCGGTTTTAAATTGCGTGAAGTGAATTAATGTTGCTCATTTTCCAAATAATAAACATTTGGTCCATTTCGATTAATTATTCTGCTTGCAGGTCTAGTATTACTCCTGGAACTGTGCTTATCATTCTTACTGGAAGATTCAAGGGAAAGAGAGTTGTGTTCTTGAAGCAACTTCCATCTGGGTTGCTTTTAGTGACTGGTGAGTTTTCAGCATTCCCTGTAATTGCCTGTCTTCATAATTTTTTATGTAGTAGCACATCGTGTTGGGGTTTGGGAGGTTTTATTATTTATACATGGGGATTAGGTTTTCTCTTCTTTACATTCATTGTGTACTTTGGATTAGATTTGCATTTGGCAGTGTCATTTTTTATGGCTTAGCGTCTTAGCAATTGTTGGCTTAAGCTTTACAAACTGATATTATCTTAATGTGTTGCCGGCATAGTGTTTACCATTGAGAAATTAGAAGTAGGATTCCTTGGGATTTAGATTTTGGTAGTATTAATAGCTTAACCTCGGAACCAATTAATATTGAAATGTCTCGTGCCTTGCATTCTGATTTCTGCCCATATCCCTTGCAATGGTCTTTACATACTACTGAAAATTTTCATGCCTCCAATTTGGCCCCAGAGACGAACATCAACGTTATAATGGGTGATTTCCTATTGCGTCTGGTCTTTTGTGAGAAAGGTTGCTTCTTGTGGTTGGCGAGGGTGTGTACTCTCATATGGAATCTTTGTGGGTAAAAAAACAATCTAGTGTTTGGTGGGCTGGATAAGGAGTCTAGTGATGTTTGGGCCCTTTTTAGGTTTTCCCTTTAGACTTCAAATTTGATTTATTTGTTTATCTACTATATGCACTATTTTGATCAATTGGGCCTTGTTTCTTTAATGAGTCTTTTGTGCTTGATTTTTTTGTTTTTCCTTGTATGCTTTCATTTTTTCCCTCAATTGGGCCTTGTTTTTTAATGAGCCTTGTTTCCTCAATTGAGCCTTAAGTGGTTTCTTGATCAAAGACATGTCTTAATTTCCTAAGCTTCATGTGCAATATCTGGGAGGGATTGGCTTGATGATGCGGATTGTATTGTATGTTTGGGAGAAGGGTTGCATATAAACTAATGATTAGATGTGGTCTGGGATTTTAGATCCGAAATTCTTGAACCTGCCGACTATCTGAATTTAACGGTTGTCATTTTAGGTCCATTCAAAGTCAATGGCGTTCCTTTAAGACGTGTGAATCAGTCATACGTGATTGCAACCTCCACCAAGGTGGACATTACAGGGGTCAGCGTGGAGAAGTTTGATGACAAATATTTCTCCAAGGAAGTTCAAAAGAAGAAAAAGAAGGGAGAAGGAGAATTTTTTGAGGCAGAGAAGGAGGTTCATAGTTTTTTCATTTTTTTTCCACTGTTCAAATATTTCAAATTTTATCATTTCTTTACCCTAATTTTTGGTCTCCGTTGTTGCAATATAGGAAAAAAGTGCACTTCCACAGGACAAAAAAGATGACCAGAAGGCAGTGGACTCAGCTCTGCTGAAGTCCATCGAGGCAGTCTCAGACTTAAAGACATACTTAGCTGCAAGGTTTTCTCTGAAGGCAGGCATGAAACCACATGAACTTGTTTTCTAAATATTTCTCTCTTGGGTGCTGAAACTTCTCGTGGAAGTTGATCCCTACAATCTTCTTGTTCATGTTTTGTTACAAGGATTCTAGATTTGATGTTATGTGTCTTGACGAATTTTGCAGTGAACTTTTATTCATCAATTTTTGCGTTATGTAGCTTCCTTTGACTACTGATAGTGATAAGATATGTACTTTTTTTTCAATTGTATCATTGTTTTCTAGTTGATGAAATACTTGAGAGAATCATTTGGAAAGAAGCCATGGTGGATAGCCAAATTGAGTTGGGCCATTTCTTCAATTGTATGCTTGAGTCTAAAAAGTATTCGTGGTTTCTTTTTCCATTTGGTAAATGGTTTTTTTTGGGGGCATCAAACAACAAAATGTCAGAATCACGTTAAAATAATTAACACGTGTCAAAATAGCCT

Coding sequence (CDS)

ATGTTGCTCATTTTCCAAATAATAAACATTTGGTCCATTTCGATTAATTATTCTGCTTGCAGGTCTAGTATTACTCCTGGAACTGTGCTTATCATTCTTACTGGAAGATTCAAGGGAAAGAGAGTTGTGTTCTTGAAGCAACTTCCATCTGGGTTGCTTTTAGTGACTGGTCCATTCAAAGTCAATGGCGTTCCTTTAAGACGTGTGAATCAGTCATACGTGATTGCAACCTCCACCAAGGTGGACATTACAGGGGTCAGCGTGGAGAAGTTTGATGACAAATATTTCTCCAAGGAAGTTCAAAAGAAGAAAAAGAAGGGAGAAGGAGAATTTTTTGAGGCAGAGAAGGAGGAAAAAAGTGCACTTCCACAGGACAAAAAAGATGACCAGAAGGCAGTGGACTCAGCTCTGCTGAAGTCCATCGAGGCAGTCTCAGACTTAAAGACATACTTAGCTGCAAGGTTTTCTCTGAAGGCAGGCATGAAACCACATGAACTTGTTTTCTAA

Protein sequence

MLLIFQIINIWSISINYSACRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKSALPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELVF

Homology

[Close]

BLAST of Cucsat.G12143 vs. ExPASy Swiss-Prot
Match: Q9FZ76 (60S ribosomal protein L6-1 OS=Arabidopsis thaliana OX=3702 GN=RPL6A PE=2 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 7.6e-81
Identity = 148/179 (82.68%), Postives = 165/179 (92.18%), Query Frame = 0


Query: 11  APKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPPK 70
           A +T +V+RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+PK +AP EKP K
Sbjct: 4   AKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAK 63

Query: 71  FYPADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTGP 130
           FYPA+DVKKP+VN+RK KPTKL++SITPGTVLIIL GRFKGKRVVFLKQL SGLLLVTGP
Sbjct: 64  FYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGP 123

Query: 131 FKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 190
           FK+NGVPLRRVNQ+YVI TSTK+DI+GV+ EKFDDKYF K  +KKKKK EGEFFEAEKE
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKE 182

[Close]

BLAST of Cucsat.G12143 vs. ExPASy Swiss-Prot
Match: Q9C9C6 (60S ribosomal protein L6-2 OS=Arabidopsis thaliana OX=3702 GN=RPL6B PE=2 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.2e-80
Identity = 148/177 (83.62%), Postives = 164/177 (92.66%), Query Frame = 0


Query: 13  KTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPPKFY 72
           +TA+V+RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAK K +AP EKPPKFY
Sbjct: 6   RTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 73  PADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTGPFK 132
           PA+DVKKP+ N+R AKP KLR+SITPGTVLIIL GRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 133 VNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 190
           +NGVPLRRVNQ+YVI TSTKVDI+GV+++KFDDKYF K  +KKKKK EGEFFEAEKE
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKE 182

[Close]

BLAST of Cucsat.G12143 vs. ExPASy Swiss-Prot
Match: Q9C9C5 (60S ribosomal protein L6-3 OS=Arabidopsis thaliana OX=3702 GN=RPL6C PE=2 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.2e-80
Identity = 148/177 (83.62%), Postives = 164/177 (92.66%), Query Frame = 0


Query: 13  KTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPPKFY 72
           +T +V+RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAK K +AP EKPPKFY
Sbjct: 6   RTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 73  PADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTGPFK 132
           PA+DVKKP+ N+R AKPTKLR+SITPGTVLIIL GRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 133 VNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 190
           +NGVPLRRVNQ+YVI TSTKVDI+GV+++KFDDKYF K  +KKKKK EGEFFEAEKE
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKE 182

[Close]

BLAST of Cucsat.G12143 vs. ExPASy Swiss-Prot
Match: P34091 (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum OX=3544 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 4.6e-78
Identity = 145/173 (83.82%), Postives = 158/173 (91.33%), Query Frame = 0


Query: 17  VSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPPKFYPADD 76
           VSRNP+L+RG+GKYSRSKMYHKRGLWAIKAKNGGVFP+H  K       EKPPKFYPADD
Sbjct: 11  VSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADD 70

Query: 77  VKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTGPFKVNGV 136
           VKKP++NKRK KPTKLR+SITPGTVLIIL GRFKGKRVVFLKQL SGLLLVTGPFKVNGV
Sbjct: 71  VKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGV 130

Query: 137 PLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 190
           PLRRVNQ+YVIATSTKVDI+GV+VEKFDDKYF K+ +KK KKGEGEFFEAEK+
Sbjct: 131 PLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKK 183

[Close]

BLAST of Cucsat.G12143 vs. ExPASy Swiss-Prot
Match: Q2YGT9 (60S ribosomal protein L6 OS=Sus scrofa OX=9823 GN=RPL6 PE=1 SV=3)

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-36
Identity = 95/214 (44.39%), Postives = 128/214 (59.81%), Query Frame = 0


Query: 1   GSQILRNSSMAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPK 60
           G ++ +   +       SRNP L+RG+G+YSRS MY ++ L+  K K      + + K K
Sbjct: 24  GGKVKKAKKVKKGKPHCSRNPVLVRGIGRYSRSAMYSRKALY--KRKYSAAKSKVEKKKK 83

Query: 61  AEAPA-------------------EKPPKFYPADDVKKPIVNKRKAKP-----TKLRSSI 120
               A                    K P++YP +DV + +++  K KP      KLR+SI
Sbjct: 84  VRVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASI 143

Query: 121 TPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIT 180
           TPGT+LIILTGR +GKRV+FLKQL SGLLLVTGP  +N VPLRR +Q +VIATSTK+DI+
Sbjct: 144 TPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDIS 203

Query: 181 GVSV-EKFDDKYFSKEVQKKKKKGEGEFFEAEKE 190
           GV + E   D YF K+  +K +  EGE F+ EKE
Sbjct: 204 GVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKE 234

[Close]

BLAST of Cucsat.G12143 vs. NCBI nr
Match: XP_004149609.1 (60S ribosomal protein L6-2 [Cucumis sativus] >KGN58615.1 hypothetical protein Csa_001784 [Cucumis sativus])

HSP 1 Score: 353 bits (905), Expect = 7.51e-121
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 10  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPP 69
           MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPP
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPP 60

Query: 70  KFYPADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 129
           KFYPADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 130 PFKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 189
           PFKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 190 VHS 192
             S
Sbjct: 181 EKS 183

[Close]

BLAST of Cucsat.G12143 vs. NCBI nr
Match: XP_008461779.1 (PREDICTED: 60S ribosomal protein L6-1-like [Cucumis melo] >KAA0048314.1 60S ribosomal protein L6-1-like [Cucumis melo var. makuwa] >TYK10659.1 60S ribosomal protein L6-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 348 bits (892), Expect = 7.16e-119
Identity = 177/183 (96.72%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 10  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPP 69
           MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPK EAPAEKPP
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKPEAPAEKPP 60

Query: 70  KFYPADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 129
           KFYPADDVKKP+VNKRKAKPTKLR+SITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLRASITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 130 PFKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 189
           PFKVNGVPLRRVNQSYVIATSTKVDITGV+VEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKVNGVPLRRVNQSYVIATSTKVDITGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 190 VHS 192
             S
Sbjct: 181 EKS 183

[Close]

BLAST of Cucsat.G12143 vs. NCBI nr
Match: XP_022935449.1 (60S ribosomal protein L6-1-like [Cucurbita moschata] >KAG6581596.1 60S ribosomal protein L6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 344 bits (882), Expect = 2.39e-117
Identity = 174/183 (95.08%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 10  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPP 69
           MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+PK +APAEKPP
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPP 60

Query: 70  KFYPADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 129
           KFYPADDVKKP+VNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 130 PFKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 189
           PFKVNGVPLRRVNQSYVIATSTKVD+ GV+VEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKVNGVPLRRVNQSYVIATSTKVDLAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 190 VHS 192
             S
Sbjct: 181 EKS 183

[Close]

BLAST of Cucsat.G12143 vs. NCBI nr
Match: XP_022983464.1 (60S ribosomal protein L6-1-like [Cucurbita maxima])

HSP 1 Score: 344 bits (882), Expect = 2.39e-117
Identity = 174/183 (95.08%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 10  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPP 69
           MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+PK +APAEKPP
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPP 60

Query: 70  KFYPADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 129
           KFYPADDVKKP+VNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 130 PFKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 189
           PFKVNGVPLRRVNQSYVIATSTKVD+ GV+VEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKVNGVPLRRVNQSYVIATSTKVDLAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 190 VHS 192
             S
Sbjct: 181 EKS 183

[Close]

BLAST of Cucsat.G12143 vs. NCBI nr
Match: XP_038880885.1 (60S ribosomal protein L6-1-like [Benincasa hispida])

HSP 1 Score: 343 bits (879), Expect = 6.83e-117
Identity = 175/183 (95.63%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 10  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPP 69
           MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKA+APAEKPP
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKPP 60

Query: 70  KFYPADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 129
           KFYPADDVKKP+VNKRK KPTKLRSSITPGTVLIILTGRFKGKRVVFLKQL SGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKPKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLQSGLLLVTG 120

Query: 130 PFKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 189
           PFKVNGVPLRRVNQSYVIATSTKVDI GV+VEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 190 VHS 192
             S
Sbjct: 181 EKS 183

[Close]

BLAST of Cucsat.G12143 vs. ExPASy TrEMBL
Match: A0A0A0L9J7 (60S ribosomal protein L6 OS=Cucumis sativus OX=3659 GN=Csa_3G698560 PE=3 SV=1)

HSP 1 Score: 353 bits (905), Expect = 3.64e-121
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 10  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPP 69
           MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPP
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPP 60

Query: 70  KFYPADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 129
           KFYPADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 130 PFKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 189
           PFKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 190 VHS 192
             S
Sbjct: 181 EKS 183

[Close]

BLAST of Cucsat.G12143 vs. ExPASy TrEMBL
Match: A0A5D3CKB9 (60S ribosomal protein L6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00210 PE=3 SV=1)

HSP 1 Score: 348 bits (892), Expect = 3.47e-119
Identity = 177/183 (96.72%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 10  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPP 69
           MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPK EAPAEKPP
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKPEAPAEKPP 60

Query: 70  KFYPADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 129
           KFYPADDVKKP+VNKRKAKPTKLR+SITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLRASITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 130 PFKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 189
           PFKVNGVPLRRVNQSYVIATSTKVDITGV+VEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKVNGVPLRRVNQSYVIATSTKVDITGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 190 VHS 192
             S
Sbjct: 181 EKS 183

[Close]

BLAST of Cucsat.G12143 vs. ExPASy TrEMBL
Match: A0A1S3CFY6 (60S ribosomal protein L6 OS=Cucumis melo OX=3656 GN=LOC103500301 PE=3 SV=1)

HSP 1 Score: 348 bits (892), Expect = 3.47e-119
Identity = 177/183 (96.72%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 10  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPP 69
           MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPK EAPAEKPP
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKPEAPAEKPP 60

Query: 70  KFYPADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 129
           KFYPADDVKKP+VNKRKAKPTKLR+SITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLRASITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 130 PFKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 189
           PFKVNGVPLRRVNQSYVIATSTKVDITGV+VEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKVNGVPLRRVNQSYVIATSTKVDITGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 190 VHS 192
             S
Sbjct: 181 EKS 183

[Close]

BLAST of Cucsat.G12143 vs. ExPASy TrEMBL
Match: A0A0A0KYA4 (60S ribosomal protein L6 OS=Cucumis sativus OX=3659 GN=Csa_4G153800 PE=3 SV=1)

HSP 1 Score: 347 bits (891), Expect = 3.12e-118
Identity = 177/190 (93.16%), Postives = 184/190 (96.84%), Query Frame = 0


Query: 3   QILRNSSMAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAE 62
           QILR+SSMAPKTARVSRNP+LIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKA+
Sbjct: 47  QILRSSSMAPKTARVSRNPELIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAD 106

Query: 63  APAEKPPKFYPADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPS 122
           +PAEKPPKFYPADDVKKP+VNKRK KPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPS
Sbjct: 107 SPAEKPPKFYPADDVKKPLVNKRKPKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPS 166

Query: 123 GLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGE 182
           GLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDI GV+VEKF DKYFSKEV +KKKKGEGE
Sbjct: 167 GLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFGDKYFSKEVHQKKKKGEGE 226

Query: 183 FFEAEKEVHS 192
           FFEAEKE  S
Sbjct: 227 FFEAEKEEKS 236

[Close]

BLAST of Cucsat.G12143 vs. ExPASy TrEMBL
Match: A0A6J1J7G9 (60S ribosomal protein L6 OS=Cucurbita maxima OX=3661 GN=LOC111482059 PE=3 SV=1)

HSP 1 Score: 344 bits (882), Expect = 1.16e-117
Identity = 174/183 (95.08%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 10  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPP 69
           MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+PK +APAEKPP
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPP 60

Query: 70  KFYPADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 129
           KFYPADDVKKP+VNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 130 PFKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 189
           PFKVNGVPLRRVNQSYVIATSTKVD+ GV+VEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKVNGVPLRRVNQSYVIATSTKVDLAGVNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 190 VHS 192
             S
Sbjct: 181 EKS 183

The following BLAST results are available for this feature:

BLAST of Cucsat.G12143 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ76	7.6e-81	82.68	60S ribosomal protein L6-1 OS=Arabidopsis thaliana OX=3702 GN=RPL6A PE=2 SV=1	[more]
Q9C9C6	2.2e-80	83.62	60S ribosomal protein L6-2 OS=Arabidopsis thaliana OX=3702 GN=RPL6B PE=2 SV=1	[more]
Q9C9C5	2.2e-80	83.62	60S ribosomal protein L6-3 OS=Arabidopsis thaliana OX=3702 GN=RPL6C PE=2 SV=1	[more]
P34091	4.6e-78	83.82	60S ribosomal protein L6 OS=Mesembryanthemum crystallinum OX=3544 GN=RPL6 PE=2 S...	[more]
Q2YGT9	1.5e-36	44.39	60S ribosomal protein L6 OS=Sus scrofa OX=9823 GN=RPL6 PE=1 SV=3	[more]

BLAST of Cucsat.G12143 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149609.1	7.51e-121	98.91	60S ribosomal protein L6-2 [Cucumis sativus] >KGN58615.1 hypothetical protein Cs...	[more]
XP_008461779.1	7.16e-119	96.72	PREDICTED: 60S ribosomal protein L6-1-like [Cucumis melo] >KAA0048314.1 60S ribo...	[more]
XP_022935449.1	2.39e-117	95.08	60S ribosomal protein L6-1-like [Cucurbita moschata] >KAG6581596.1 60S ribosomal...	[more]
XP_022983464.1	2.39e-117	95.08	60S ribosomal protein L6-1-like [Cucurbita maxima]	[more]
XP_038880885.1	6.83e-117	95.63	60S ribosomal protein L6-1-like [Benincasa hispida]	[more]

BLAST of Cucsat.G12143 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9J7	3.64e-121	98.91	60S ribosomal protein L6 OS=Cucumis sativus OX=3659 GN=Csa_3G698560 PE=3 SV=1	[more]
A0A5D3CKB9	3.47e-119	96.72	60S ribosomal protein L6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CFY6	3.47e-119	96.72	60S ribosomal protein L6 OS=Cucumis melo OX=3656 GN=LOC103500301 PE=3 SV=1	[more]
A0A0A0KYA4	3.12e-118	93.16	60S ribosomal protein L6 OS=Cucumis sativus OX=3659 GN=Csa_4G153800 PE=3 SV=1	[more]
A0A6J1J7G9	1.16e-117	95.08	60S ribosomal protein L6 OS=Cucurbita maxima OX=3661 GN=LOC111482059 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 85..128 e-value: 1.4E-5 score: 27.0
IPR005568	Ribosomal protein L6, N-terminal	PFAM	PF03868	Ribosomal_L6e_N	coord: 4..59 e-value: 7.2E-17 score: 61.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..67
None	No IPR available	PANTHER	PTHR10715:SF9	60S RIBOSOMAL PROTEIN L6	coord: 1..123
IPR000915	60S ribosomal protein L6E	PANTHER	PTHR10715	60S RIBOSOMAL PROTEIN L6	coord: 1..123
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 84..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G12143.T4	Cucsat.G12143.T4	mRNA
Cucsat.G12143.T1	Cucsat.G12143.T1	mRNA
Cucsat.G12143.T5	Cucsat.G12143.T5	mRNA
Cucsat.G12143.T2	Cucsat.G12143.T2	mRNA
Cucsat.G12143.T8	Cucsat.G12143.T8	mRNA
Cucsat.G12143.T7	Cucsat.G12143.T7	mRNA
Cucsat.G12143.T3	Cucsat.G12143.T3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome