Cucsat.G12139 (gene) Cucumber (B10) v3

Overview
NameCucsat.G12139
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionSm-like protein LSM7
Locationctg1837: 957049 .. 961572 (-)
RNA-Seq ExpressionCucsat.G12139
SyntenyCucsat.G12139
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTTGGAGGGTTGCCTTTCCCGCCATCCACCATTCCTCTCAACGAGCAAATCTAGGGCACATTCTTTCCGCTCCTCATCACTTCCAATCAAAGTAAGCTTCAATTCACTCTCCTTCTTTCCACAAATTTCGGTTTTCTGCACTCTTCTTATACTCAATGTACCTTCCAGTTCTTCAATTTTTGATTTCCAGATGCATATAATGCCCTAACTTCCCCGACTTTTATTTTAATCGATCAGCACTTGGAATTTTCTCTTTTCGCCCGTAACGAAACGTCTCACTTCTCGGATATTTCAGGTTCCTGGGGCGTTTAATTTTACGGAGGAGCTGAGAAAACGATTGCGCGATGGTAAATTTCGTAACGATTTCTTCAATTAGAATATTGATTATGGCAGGCTGATTACGAAGTATAATGTGGTATTCGTATCTTTTGTTTTATCAGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACTGGCGGCAGACAAGGTTATTTCTAATGATTATGCTTATAGTATTACTGGACGATTGTTTGCGCTTTGTTACTTCCCGATTAGTAAGCTTTTTATTAAAGTAATCGTCTGTTGCTGTTGAGAGGATCGAGGCATATAATCTAATGTTCGATGTTGATTTTGTTTTTCTTTATGGAGCTTTCTTTATTTTTAAATGCGAGGAAATTGCTTTGTGAACCTTAGTTTTCCATTTACAGTTACTGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTGTAGAGTTTTTAAGAGGTAACCAATTAACTGGATTCTGGCATAATATATGAGATTTGTGGAATTTTGTGGGCCTTTAGACTGAAAGCTCACTGAGTATTGATTAGTATTGTTCATATCGTTTTTCTCATTTATCATCACTTTTCTTTATCTGATTGCTATTTTAAATATATGAGAAACAATTAGAGTTAGTGTGAGAATCATTTGATATTGGATGAAAGACACTAATTAAGATTTTAATTTATCAGTAACATATGCAGGCGAAATAGTTTTTTTCTATTGTATTAATTTATATATAGTTTTTCTATTAGAATAGATACTGGTTTATTTTCTGTTGATTTATCTAATTAAGATGTGGTGATGTGATAAATAACCTTTCATGTAAAACATTGTTTTTGCTTTGCATGTTTTCTTTAAATATAATTTGAATGGATATGTTTTTTCTTTCTTTCTTTCAATAGAAAAACAAACATGGCAATAATACGATGAACTATATGAATAATTCTGTTATTTTATTTTTATTTTGAATCTTGGATATATTTTTAATTTATATTAGGCTATTGCATAAATTAGCATGCGCAATTTGCATTATTATCTTGCAAACCTTTGCATAACATAAATTTGGACTTTATTTGTATGCCCATATGCTGTTATGAGATTTCACTTGAATAAAAGTTGCAAATATGTGCAAATCTATATCAGTTGGTTTCATAATAATTTTCTTATATAAGAAGTCTTTCATAATTTATGAAAACCATGATTTTTTTCTTTCTATTGTAACTTCTAACTGGATGATTAATTAATTCATAGGGCATAAATGAAATTCTGATTGAACATGTATGTGTGTGCAATACATATAATAATAAGCAATCAATATGCATGGACAAAAGAGGAAGATAAGCTATCCCGTCTTCCAATAGGTCAATAAGGTTACTATAAGGCACTTCAATTGGTTAGAATCAGAAAGAGCTGTGACTGTTTTTTTTCTTTTTTTGAAAAAACCAGTGGTTGACCTCTAGATTATTTAACATCACATCTTCAGTGAGTAGGGTCTGGGAATACATGTCAAGGGAAGTTTCAAGAACCTCCCATCTAGCATTTCCTACTGAAATACACAGCAACTATTTAGCTTATGTACACTCAAGATATGGCTAACTACCTCACCCATGTCTCTCACCCCCAAGTATGACAGACACCAACTAACTTTATTCTCTCACATTTACTCTCCCCTTACACACTGATACGCTCTGGCTGTTGAAGGCCTATTAGGAAGGGTATACAAATTTGAGGGCAGATCTAGATGTTCTCAGAACTTATCCAAGCTCCAAACCTTGTCTTCCTAATCTTTTTGTCTCCTTCCAAAGTTCCTCCCAAAAAGCTTTGATGGTTTTGAACCACACACCATCCGATTTAAACATATGCTCACAGAGAATGTTGGAACAAGGCCGGTTTATATGTTATGGAAGCACCAATGGAAGCTGGAGTCCAGAAAGATCCAGTAGCTTAAACCTACAACAGAATGAGCAGGAAGTCCTAATAATCCTCAAAATTTCTTGTTTTTAACCAAACTTTAGACACCATTGGCTTAGAATGGAAGGTCCTTTTATAACCCTTACTTGGGGAAGGGGATGCCTTCTCACCAAGTATCAACTTGCAAATTAGTTTAGGAAACACAAGCATGGACATTTAATGTAGGTTCACTCTCGAGCAACATTTTTTATTTGCATCATTCATTGGTTAATGTACCATTTTGGTCCTTATACTCTAGGATTTACTTTTATTCCATTTTAATTCTGGTATTATACTTTCAAATATTCAAATATAATCCCTGGAATGACTACTTTCAATAAATTAGAAATATAGTCTCTACTGTTTATTTGAAGTAAATTTTGATCAAACTTGGTAAAATAATAATATTAATTTTCATTCAACAGACCATCTTTTTTCTTTATGAAGAGGTTAACACTAAGCTATTGTTAGGGATTAATTTTAAGATTTATTTGAACTTGGAACTGTATGGAATAAATTTAGACATTTGGATTTATGTGGGCTAAAATGGAATGAAACTTTAAGTTCATGGACCAAAATGATATTTTGACTTAGTTCATATTGCACATTAACAAAAAGGCTCCTTTCCAAAGGTAAGGTTTTTTATTTTCCCAAAATCCAGCTGCTTTAGTTTGGTGGTTGTATGTTTCAATCGTTTGATTTTTGTTCTGTGCCCCATTTTCTTAATCCTAAAATTCGCTTTGGTCGACTTATGGTGTACTTGGAATACATTCCCAAGTGATTAATTTAAAAAATAAGTCATTTTGGAAAAGATGTGAGTGTTAGGCAACCACTCAAAATAGCTTTTGAAGTATAGTTTACATAGATTTTATAAAGAAAGTTTAAATAAAAATGAAATTTTAAAAAAATATTTTGTCCATAAGTCAATCAAAATGAGCCTACAGGCCCTTAGTCAGTCATGTTTATTTCTTCTGTGGTAATAGTGAACCTTTTACTGTTGTTTATTAGTAATCTTTTACAATGAACAATAAGTTAAAAATTGTCCTTGTACCTTATTCCTGATGCTTGAATGACACTGGCGGAAATTTTGATATATTGATTGTCGTTTTAATTCTTTTTCTCTTTTTTTTTCTGCAGATCCTGATGATCCATTGAAGACAACAGATCAAACCAGGCCTCTTGGCCTAATTGTATGATTCTTACTATCTACATATTTTCATCATCGTTTAAAATAAAGCAACTATGATCAAAGCTTTGGATACCATGAACTATCAATTTTTCTAAATAGTATTGTTGTCTAAGCATGCAGCTTTGGACTTCATTTTGACAATTGCAATTATCTATGCGCTAAACAGATCAAATGGTTTTAGGTAGCTTGAAAATTTCAGAGCTTTTATTTATTGTTAAAGAAAAAAGTAGCTATCATGAGATTTTCCGACTGAAGACTTCCTCTAAGGACTGGATAAAGGCCTGTGTGTTCTGACCGAGCCTGTTTCTGTCATTTGAATAAATTGTATATACTTTTGCACTGTGCAAGTGCAATCGATTTTCTCTGCTGTCCATTGCACCATGTTAAACTGACTTGAAAATTTTTTATGCTACTGCTCATTCATTTGAAACTTCTTGCGTGCTTCATACATTTTCTTACCGTCTTTTTTCTCTTTTTATTGCTGTAATTTAGGGGTTAGGCCATGGTTAACTATGTTTTGTGAAAGTTTGTTGAAAATTATAAATTATTCTACCACTCAGAAAAAGTGAAAGTTGGGCTCTTCTTGAGCGTTTTGTGCATGTGCAGAAGAAGTAAACAGGTGTTATTTAAGGCGTGCATTTTAGTTCATATAGATTCTTTTCTTGCGTATTATCTAGCAACCTCAGTATGATTAAAATTGGCATACTATTCATTTCACAGGTGTGCAGGGGGACTGCTGTAATGCTGGTGTCTCCAGTTGATGGAACAGACGAGATTGCTAACCCTTTCATCCAACCCGATGGTGCATAGATTTAACTTTTTTTTTTTTTTTTTTCTTTGTTCAACTCTAATTTCCCTATTTTGTATTTGAATATATCAAGTTTCGGTATTTACTTTGTGATTCCTCGCTCCCTCTCTCTCTATCAAACCATTAAGTTTCAATCCTCCGACATAGATGGAGCACTTGTCCATGTGAAGTAAAATGGTGAAATTTTTGTTATGCTTTCGAGTCTTTTATCTCCTTTCTCTGAGTTGTACTGTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGGTGGTTCCTTTAACTTTGGATGCCTTCCTAAGTTTGAAAAGAGTACATAAGGTTTTGATGGCATTGCCCTATCAGCTGTTGCCTGATACTGACAAAAGAACTGATGGTGTAGAAAGGGAGATGGGACCCTACTGGTTTGGCCGACAAAGGATTTCTTTTGTTGATACCCCAACTTGTTCTCTTTCGGCACATGTGGGACTTTATGCCAAGCTTAGCCACCTCTTTGGTCTCACCTCCAACT

Coding sequence (CDS)

ATGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACTGGCGGCAGACAAGTTACTGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTGTAGAGTTTTTAAGAGATCCTGATGATCCATTGAAGACAACAGATCAAACCAGGCCTCTTGGCCTAATTGTGTGCAGGGGGACTGCTGTAATGCTGGTGTCTCCAGTTGATGGAACAGACGAGATTGCTAACCCTTTCATCCAACCCGATGGTGCATAG

Protein sequence

MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Homology
[Close]
BLAST of Cucsat.G12139 vs. ExPASy Swiss-Prot
Match: Q9SI54 (Sm-like protein LSM7 OS=Arabidopsis thaliana OX=3702 GN=LSM7 PE=1 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.9e-44
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0 

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFI 95
          TDQTR LGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]
BLAST of Cucsat.G12139 vs. ExPASy Swiss-Prot
Match: Q9UK45 (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens OX=9606 GN=LSM7 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.9e-28
Identity = 55/96 (57.29%), Postives = 75/96 (78.12%), Query Frame = 0 

Query: 4   RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQ 63
           +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RDPDD  K T+ 
Sbjct: 8   KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67

Query: 64  TRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TR LGL+VCRGT+V+L+ P DG + I NPFIQ   A
Sbjct: 68  TRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA 103

[Close]
BLAST of Cucsat.G12139 vs. ExPASy Swiss-Prot
Match: Q9CQQ8 (U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus OX=10090 GN=Lsm7 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.5e-28
Identity = 53/92 (57.61%), Postives = 74/92 (80.43%), Query Frame = 0 

Query: 4  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQ 63
          +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RDPDD  K T+ 
Sbjct: 8  KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTED 67

Query: 64 TRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQ 96
          TR LGL+VCRGT+V+L+ P DG + I NPF+Q
Sbjct: 68 TRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQ 99

[Close]
BLAST of Cucsat.G12139 vs. ExPASy Swiss-Prot
Match: Q54HF6 (Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum OX=44689 GN=lsm7 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 8.8e-26
Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 0 

Query: 4  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQ 63
          +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+  EF+RD +DPL TTD+
Sbjct: 8  KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDE 67

Query: 64 TRPLGLIVCRGTAVMLVSPVDGTDEIANPF 94
           R LGL+VCRG++VM+V P +G + I NP+
Sbjct: 68 KRFLGLVVCRGSSVMMVCPTEGCEPIDNPY 97

[Close]
BLAST of Cucsat.G12139 vs. ExPASy Swiss-Prot
Match: O74499 (U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=lsm7 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-24
Identity = 51/94 (54.26%), Postives = 74/94 (78.72%), Query Frame = 0 

Query: 4   RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQ 63
           RKE++LDL+++ D+ +Q   TGGRQ+TG LKG+DQL+NLVLD+  E LR+P+D  K T  
Sbjct: 21  RKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDG-KLTGA 80

Query: 64  TRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 98
            R LGL+V RGT ++L++P+DG++EI NPF+Q +
Sbjct: 81  IRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQAE 113

[Close]
BLAST of Cucsat.G12139 vs. NCBI nr
Match: XP_004149601.1 (sm-like protein LSM7 [Cucumis sativus] >XP_004149602.1 sm-like protein LSM7 [Cucumis sativus] >KGN58602.1 hypothetical protein Csa_001125 [Cucumis sativus])

HSP 1 Score: 201 bits (512), Expect = 3.28e-65
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]
BLAST of Cucsat.G12139 vs. NCBI nr
Match: XP_038903588.1 (sm-like protein LSM7 [Benincasa hispida] >XP_038903589.1 sm-like protein LSM7 [Benincasa hispida] >KAA0048332.1 sm-like protein LSM7 [Cucumis melo var. makuwa])

HSP 1 Score: 201 bits (511), Expect = 4.66e-65
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60

Query: 61 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]
BLAST of Cucsat.G12139 vs. NCBI nr
Match: XP_011625467.1 (sm-like protein LSM7 [Amborella trichopoda] >XP_011625468.1 sm-like protein LSM7 [Amborella trichopoda] >XP_020526240.1 sm-like protein LSM7 [Amborella trichopoda])

HSP 1 Score: 198 bits (503), Expect = 7.74e-64
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60

Query: 61 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTRPLGLIVCRGTAVMLVSP DGTDEI+NPF+QPDGA
Sbjct: 61 TDQTRPLGLIVCRGTAVMLVSPTDGTDEISNPFVQPDGA 99

[Close]
BLAST of Cucsat.G12139 vs. NCBI nr
Match: KAF3452671.1 (hypothetical protein FNV43_RR03104 [Rhamnella rubrinervis])

HSP 1 Score: 197 bits (502), Expect = 1.10e-63
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTRPLGLIVCRGTAVMLVSP DGTDEIANPF+QP+GA
Sbjct: 61 TDQTRPLGLIVCRGTAVMLVSPTDGTDEIANPFLQPEGA 99

[Close]
BLAST of Cucsat.G12139 vs. NCBI nr
Match: XP_022152570.1 (sm-like protein LSM7 [Momordica charantia] >XP_022152571.1 sm-like protein LSM7 [Momordica charantia])

HSP 1 Score: 197 bits (502), Expect = 1.17e-63
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60

Query: 61 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTR LGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]
BLAST of Cucsat.G12139 vs. ExPASy TrEMBL
Match: A0A0A0LD28 (Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G697950 PE=3 SV=1)

HSP 1 Score: 201 bits (512), Expect = 1.59e-65
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]
BLAST of Cucsat.G12139 vs. ExPASy TrEMBL
Match: A0A5A7TXR7 (Sm-like protein LSM7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00460 PE=3 SV=1)

HSP 1 Score: 201 bits (511), Expect = 2.25e-65
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60

Query: 61 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]
BLAST of Cucsat.G12139 vs. ExPASy TrEMBL
Match: A0A6J1DI46 (sm-like protein LSM7 OS=Momordica charantia OX=3673 GN=LOC111020268 PE=3 SV=1)

HSP 1 Score: 197 bits (502), Expect = 5.67e-64
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60

Query: 61 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTR LGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]
BLAST of Cucsat.G12139 vs. ExPASy TrEMBL
Match: A0A1S3TGW6 (sm-like protein LSM7 OS=Vigna radiata var. radiata OX=3916 GN=LOC106755385 PE=3 SV=1)

HSP 1 Score: 197 bits (500), Expect = 1.08e-63
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 0 

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTR LGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 61 TDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]
BLAST of Cucsat.G12139 vs. ExPASy TrEMBL
Match: A0A2P5D7Z2 (Sm-like protein Lsm7/snRNP-G OS=Parasponia andersonii OX=3476 GN=PanWU01x14_088270 PE=3 SV=1)

HSP 1 Score: 197 bits (500), Expect = 1.08e-63
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 0 

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTR LGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 61 TDQTRSLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

The following BLAST results are available for this feature:
BLAST of Cucsat.G12139 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SI541.9e-4493.62Sm-like protein LSM7 OS=Arabidopsis thaliana OX=3702 GN=LSM7 PE=1 SV=1[more]
Q9UK451.9e-2857.29U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens OX=9606 GN=LSM7 PE=1 SV... [more]
Q9CQQ85.5e-2857.61U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus OX=10090 GN=Lsm7 PE=1 S... [more]
Q54HF68.8e-2657.78Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum OX... [more]
O744991.7e-2454.26U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 97... [more]
BLAST of Cucsat.G12139 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004149601.13.28e-65100.00sm-like protein LSM7 [Cucumis sativus] >XP_004149602.1 sm-like protein LSM7 [Cuc... [more]
XP_038903588.14.66e-6598.99sm-like protein LSM7 [Benincasa hispida] >XP_038903589.1 sm-like protein LSM7 [B... [more]
XP_011625467.17.74e-6495.96sm-like protein LSM7 [Amborella trichopoda] >XP_011625468.1 sm-like protein LSM7... [more]
KAF3452671.11.10e-6396.97hypothetical protein FNV43_RR03104 [Rhamnella rubrinervis][more]
XP_022152570.11.17e-6397.98sm-like protein LSM7 [Momordica charantia] >XP_022152571.1 sm-like protein LSM7 ... [more]
BLAST of Cucsat.G12139 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LD281.59e-65100.00Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G697950 PE=3 SV=... [more]
A0A5A7TXR72.25e-6598.99Sm-like protein LSM7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264... [more]
A0A6J1DI465.67e-6497.98sm-like protein LSM7 OS=Momordica charantia OX=3673 GN=LOC111020268 PE=3 SV=1[more]
A0A1S3TGW61.08e-6397.98sm-like protein LSM7 OS=Vigna radiata var. radiata OX=3916 GN=LOC106755385 PE=3 ... [more]
A0A2P5D7Z21.08e-6397.98Sm-like protein Lsm7/snRNP-G OS=Parasponia andersonii OX=3476 GN=PanWU01x14_0882... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..82
e-value: 1.4E-23
score: 94.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 10..82
e-value: 1.1E-20
score: 73.1
NoneNo IPR availableGENE3D2.30.30.100coord: 1..92
e-value: 1.0E-32
score: 114.2
NoneNo IPR availablePIRSFPIRSF037188Lsm7coord: 1..98
e-value: 1.7E-44
score: 148.3
NoneNo IPR availablePANTHERPTHR10553:SF30BNAA06G33630D PROTEINcoord: 3..97
IPR044641Sm-like protein Lsm7/SmGPANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 3..97
IPR017132Sm-like protein Lsm7CDDcd01729LSm7coord: 5..93
e-value: 2.51741E-58
score: 172.0
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 11..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G12139.T1Cucsat.G12139.T1mRNA
Cucsat.G12139.T5Cucsat.G12139.T5mRNA
Cucsat.G12139.T6Cucsat.G12139.T6mRNA
Cucsat.G12139.T2Cucsat.G12139.T2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000956 nuclear-transcribed mRNA catabolic process
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:1990726 Lsm1-7-Pat1 complex
cellular_component GO:0120115 Lsm2-8 complex
cellular_component GO:0097526 spliceosomal tri-snRNP complex
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0071004 U2-type prespliceosome
cellular_component GO:0005688 U6 snRNP
molecular_function GO:0003723 RNA binding