Cucsat.G12007 (gene) Cucumber (B10) v3

Overview
NameCucsat.G12007
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionGATA transcription factor 18-like
Locationctg1820: 4851283 .. 4853142 (-)
RNA-Seq ExpressionCucsat.G12007
SyntenyCucsat.G12007
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCCCAACTCTTTCTCTTCTACTCCCCTCTCCCCACCTCCTCATAAACCTCAATTCCATTCTAAAATCATGATGCACCACTACGGCGGCGGAGGCGGCGGCAGCGCCTCTTCCTTTTCCGTCTTCTTATCTGTCCCAAACCACGGCGCTGCCGATATGTATTCTTCTTCTACTAATTACGCCTCTTCCTCTTCCTCTCCTTCTTCTGTTGATTGTACGCTTTCTCTCGGTACTCCTTCCACGCGCTCATCCGAATTTGACGGTGATAAACGCGCCGCCGCCGCCGCTGCACGTAATCACCACCGCCGTTCCGCTGGTTCTTATGTCTCTAATTTCTGTTGGGATTTGTTGCATCCTAAGCATAAGACTTCTGGCCGTGGTGGCGGCGGCGGCGGTGCTTCTAATAATAATATAAATGCCGCCGTGAGTAACGGTGGCGATCCGCTTCTTGCTCGGCGTTGCGCTAACTGTGATACTACTTCCACTCCCCTCTGGCGAAATGGGCCTAGAGGCCCAAAGGTAAATCAATATACCATAATGAACTAATATATTAATAACTACACATTAAAACTATAATATCCACCGTAGATTATTATTGATTAAACACTTGTATTTACTTATTATTTTCGTGCATGGAAGATCTTAGTATTACTTATTTTTTTCAATAAATAGATTTGAACCCATTAAAAAAAATATGGGATTTCCATCTCAAAAGTAATCAATATAATGTGATGGCGAGATCTCTTTACTAGATTTTCAAAGTTATTTTCGAGTATGTATTTTTCATCAAACATATTTAATTACTCAAAATTAATTTATATTCTAAAAAGTAATTCGTATATTTTGAATCGTTAAAGGTATATTAATTCAAAATATGACAGTAATTACACTTTCAAAATAAACTTGTAGACTAGCTTAATTTTAGTGTTGTCACGTCTATTATCACTCAAAACCATTATTGGTAATCTTTCTAAAATTAAATGGGATAATATCAATGTTGTATTGACCAATGTTAAGATGGTTTTGAAGCGCAATTAATTATATTGATTAACACATTGGAATCAGACATTTGAATCTCGAGTAGATTTATATAATCAATGTCATGTTCTCTTTTTCTCCCTTTTTGGAAAGGAAACAAATTCTTTTGTTATTATTATTGTTTTAATTTTTATACTCTTAACTTCAAAATACAAATTCAAAACATTCGAGTATTTGTTTTTATTTAATAACACATTATTTGTTTGTGAATGAATTTCTGAGTACAGTCGCTATGTAATGCGTGTGGGATTCGATTCAAAAAGGAAGAGCGAAGAGCGGCGGCGGCGACGGTGAACAGCTCGGTGGCAGAATCAAACCACCACCACCACCACCACCATCACCCAATGTTCAACGGAAGTTATACAAATTCAAATACCTGGGTTCCACAGCAGTTGCCGGCAACAACTCAGAAACATCCTTGCCTGTCGGCTGCCATAGGAAACGAGGACGTTGGACCGGAAAATGGGATTTCGTTTCTGTCTTGGCGGCTTAACGTTGCTAATACCGATCACCGGCCCACTCTCGTCCATGATTTCACAAGATGAGTCAACAACAAAAAAGAAAAAGTACAAATTAGAAAATTAGAAAAAAAAAATCAACTGAGCAGGTTTTTATATATTTTTTATATATAAAAAATTTATAGTACGAATTTCTACTGCGAAGATTAAAAAGCTGAGTCCTTTTTCTCCATCATTTGATGGGATGGAGTGGAATTAAGCTGAGATAATCAATTATATTTTAACTTTAGCTACAATATTTTTATTCTTTTAGTTACATTGAAATTTTGACACCAACATCTATGTTTTCCCCTCCATGTAATCG

Coding sequence (CDS)

TTCCCCAACTCTTTCTCTTCTACTCCCCTCTCCCCACCTCCTCATAAACCTCAATTCCATTCTAAAATCATGATGCACCACTACGGCGGCGGAGGCGGCGGCAGCGCCTCTTCCTTTTCCGTCTTCTTATCTGTCCCAAACCACGGCGCTGCCGATATGTATTCTTCTTCTACTAATTACGCCTCTTCCTCTTCCTCTCCTTCTTCTGTTGATTGTACGCTTTCTCTCGGTACTCCTTCCACGCGCTCATCCGAATTTGACGGTGATAAACGCGCCGCCGCCGCCGCTGCACGTAATCACCACCGCCGTTCCGCTGGTTCTTATGTCTCTAATTTCTGTTGGGATTTGTTGCATCCTAAGCATAAGACTTCTGGCCGTGGTGGCGGCGGCGGCGGTGCTTCTAATAATAATATAAATGCCGCCGTGAGTAACGGTGGCGATCCGCTTCTTGCTCGGCGTTGCGCTAACTGTGATACTACTTCCACTCCCCTCTGGCGAAATGGGCCTAGAGGCCCAAAGTCGCTATGTAATGCGTGTGGGATTCGATTCAAAAAGGAAGAGCGAAGAGCGGCGGCGGCGACGGTGAACAGCTCGGTGGCAGAATCAAACCACCACCACCACCACCACCATCACCCAATGTTCAACGGAAGTTATACAAATTCAAATACCTGGGTTCCACAGCAGTTGCCGGCAACAACTCAGAAACATCCTTGCCTGTCGGCTGCCATAGGAAACGAGGACGTTGGACCGGAAAATGGGATTTCGTTTCTGTCTTGGCGGCTTAACGTTGCTAATACCGATCACCGGCCCACTCTCGTCCATGATTTCACAAGATGA

Protein sequence

FPNSFSSTPLSPPPHKPQFHSKIMMHHYGGGGGGSASSFSVFLSVPNHGAADMYSSSTNYASSSSSPSSVDCTLSLGTPSTRSSEFDGDKRAAAAAARNHHRRSAGSYVSNFCWDLLHPKHKTSGRGGGGGGASNNNINAAVSNGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAATVNSSVAESNHHHHHHHHPMFNGSYTNSNTWVPQQLPATTQKHPCLSAAIGNEDVGPENGISFLSWRLNVANTDHRPTLVHDFTR
Homology
[Close]
BLAST of Cucsat.G12007 vs. ExPASy Swiss-Prot
Match: Q8LC79 (GATA transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=GATA18 PE=1 SV=2)

HSP 1 Score: 176.0 bits (445), Expect = 5.8e-43
Identity = 130/321 (40.50%), Postives = 161/321 (50.16%), Query Frame = 0 

Query: 8   TPLSPPPHKPQFHSKIMMHH------YGGGGGGSASSFSVFLSVPNHGAADMYSSSTNYA 67
           TP +        HS  M HH      Y      +A S+S+  S+ N G  +      +++
Sbjct: 4   TPYTTSTQGQYCHSCGMFHHHSQSCCYNNNNNSNAGSYSMVFSMQNGGVFEQNGEDYHHS 63

Query: 68  SSSSSPSSVDCTLSLGTPSTRSSEFDGDKRAAAAAARNHHRRSAGSYVSNFCWDLLHPKH 127
           S     S VDCTLSLGTPSTR  E D  +R + ++        A S +SNF WDL+H K+
Sbjct: 64  S-----SLVDCTLSLGTPSTRLCEEDEKRRRSTSS-------GASSCISNF-WDLIHTKN 123

Query: 128 KT---------------------SGRGGGGGGASNNNINAAVSNGGDPLLARRCANCDTT 187
                                  SG GGGGGG            GGD LLARRCANCDTT
Sbjct: 124 NNSKTAPYNNVPSFSANKPSRGCSGGGGGGGG----------GGGGDSLLARRCANCDTT 183

Query: 188 STPLWRNGPRGPKSLCNACGIRFKKEERRAAAATVNSSVA-------ESNHHH--HHHHH 247
           STPLWRNGPRGPKSLCNACGIRFKKEERR  AAT N+ V        +  HH+  ++++H
Sbjct: 184 STPLWRNGPRGPKSLCNACGIRFKKEERRTTAATGNTVVGAAPVQTDQYGHHNSGYNNYH 243

Query: 248 PMFNGSYTNSNTWVPQQLPATTQKHPC------------LSAAIGN--EDVGPENGISFL 279
              N +  N   W       +TQ+ PC              + + N  E  G   G+ FL
Sbjct: 244 AATNNNNNNGTPWAHHH---STQRVPCNYPANEIRFMDDYGSGVANNVESDGAHGGVPFL 295

[Close]
BLAST of Cucsat.G12007 vs. ExPASy Swiss-Prot
Match: Q6QPM2 (GATA transcription factor 19 OS=Arabidopsis thaliana OX=3702 GN=GATA19 PE=1 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-32
Identity = 107/242 (44.21%), Postives = 129/242 (53.31%), Query Frame = 0 

Query: 53  MYSSSTNYASSSSSP-SSVDCTLSLGTPSTRSSEFDGDKRAAAAAARNHHRRSAGSYVSN 112
           M+ S  N  S  SSP +SVDCTLSLGTPSTR    D ++R +     +H   + G     
Sbjct: 5   MFFSPENDVSHHSSPYASVDCTLSLGTPSTRLCNEDDERRFS-----SHTSDTIG----- 64

Query: 113 FCWDLLHPKHKTSGRGGGGGGASNNNINAAVSNGGDPLLARRCANCDTTSTPLWRNGPRG 172
             WD L+   K     GGGGG  N             LLARRCANCDTTSTPLWRNGPRG
Sbjct: 65  --WDFLNGSKK-----GGGGGGHN-------------LLARRCANCDTTSTPLWRNGPRG 124

Query: 173 PKSLCNACGIRFKKEERRAAAATVNSS--------VAESNHHHHHHHHPMFNGSYTNSNT 232
           PKSLCNACGIRFKKEERRA+ A  ++S        V   +H    +++   N  Y +S+ 
Sbjct: 125 PKSLCNACGIRFKKEERRASTARNSTSGGGSTAAGVPTLDHQASANYYYNNNNQYASSSP 184

Query: 233 W--------VPQQLPATTQKHPCLSAAIGNEDVGPENGISFLSWRLNVANTDHRPTLVHD 278
           W        VP   PA  +        + + DV  +    FLSWRLNVA+   R  LVHD
Sbjct: 185 WHHQHNTQRVPYYSPANNEYSYVDDVRVVDHDVTTD---PFLSWRLNVAD---RTGLVHD 210

[Close]
BLAST of Cucsat.G12007 vs. ExPASy Swiss-Prot
Match: B8AX51 (GATA transcription factor 15 OS=Oryza sativa subsp. indica OX=39946 GN=GATA15 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.1e-28
Identity = 106/271 (39.11%), Postives = 128/271 (47.23%), Query Frame = 0 

Query: 24  MMHHYGGGGGG--------------SASSFSVFLSVPN-----------HGAADMYSSST 83
           M+HHY  GG G              ++S+FS+F  + N             A D +S+ T
Sbjct: 1   MLHHYYSGGAGHHQDVAAAGSPGDMASSTFSLFFPMSNGQCWPPSTVEESAAYDDHSTVT 60

Query: 84  NYAS--SSSSPSSVDCTLSLGTPSTRSSEFDGDKRAAAAAARNHHRRSAGSYVS----NF 143
              S  SSSS  SVDCTLSLGTPS+R +E      AAAA A NH       Y S      
Sbjct: 61  TSPSSPSSSSTGSVDCTLSLGTPSSRRAE----PVAAAAPAANHGAPVPAHYPSLSAATV 120

Query: 144 CWDLLHPKHKTSGRGGGGGGASNNNINAAVSNGGDPLLARRCANCDTTSTPLWRNGPRGP 203
            WD     +    +G    GA+      A   G D LL RRCANC T STPLWRNGPRGP
Sbjct: 121 SWDATAESYYCGQQGRPATGAA----KCAAGAGHDALLDRRCANCGTASTPLWRNGPRGP 180

Query: 204 KSLCNACGIRFKKEERRAAAATVNSSVAESNHHHHHHHHPMFNGSYTNSNTWVPQQLPAT 263
           KSLCNACGIR+KKEERRAAA T  +  A             F  +     +   +  PA 
Sbjct: 181 KSLCNACGIRYKKEERRAAATTTTADGAAGCG---------FITAQRGRGSTAAKAAPAV 240

[Close]
BLAST of Cucsat.G12007 vs. ExPASy Swiss-Prot
Match: Q6L5E5 (GATA transcription factor 15 OS=Oryza sativa subsp. japonica OX=39947 GN=GATA15 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-27
Identity = 107/273 (39.19%), Postives = 129/273 (47.25%), Query Frame = 0 

Query: 24  MMHHYGGGGGG--------------SASSFSVFLSVPN-----------HGAADMYSSST 83
           M+HHY  GG G              ++S+FS+F  + N             A D +S+ T
Sbjct: 1   MLHHYYSGGAGHHQDVAAAGSPGDMASSTFSLFFPMSNGQCWPPSTVEESAAYDDHSTVT 60

Query: 84  NYAS--SSSSPSSVDCTLSLGTPSTRSSEFDGDKRAAAAAARNHHRRSAGSYVS----NF 143
              S  SSSS  SVDCTLSLGTPS+R +E      AAAA A NH       Y S      
Sbjct: 61  TSPSSPSSSSTGSVDCTLSLGTPSSRRAE----PVAAAAPAANHGAPVPAHYPSLSAATV 120

Query: 144 CWDLLHPKHKTSGRGGGGGGASNNNINAAVSNGGDPLLARRCANCDTTSTPLWRNGPRGP 203
            WD     +    +G    GA+      A   G D LL RRCANC T STPLWRNGPRGP
Sbjct: 121 SWDATAESYYCGQQGRPATGAA----KCAAGAGHDALLDRRCANCGTASTPLWRNGPRGP 180

Query: 204 KSLCNACGIRFKKEERRAAAATVNSSVAESNHHHHHHHHPMFNGSYTNSNTWVPQQLPAT 263
           KSLCNACGIR+KKEERRAAA T  +  A             F  +     +   +  PA 
Sbjct: 181 KSLCNACGIRYKKEERRAAATTTTADGAAGCG---------FITAQRGRGSTAAKAAPAV 240

[Close]
BLAST of Cucsat.G12007 vs. ExPASy Swiss-Prot
Match: Q9ZPX0 (GATA transcription factor 20 OS=Arabidopsis thaliana OX=3702 GN=GATA20 PE=2 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 4.6e-24
Identity = 92/241 (38.17%), Postives = 123/241 (51.04%), Query Frame = 0 

Query: 37  SSFSVFLSVPNHGAADMYSSSTNYASSSSSPSSVDCTLSLGTPSTRSSEFDGDKRAAAAA 96
           S+FS+F S  N    D    + +  ++ SS +SVDCTLSLGTPSTR  +           
Sbjct: 8   SNFSMFFSSEND---DQNHHNYDPYNNFSSSTSVDCTLSLGTPSTRLDD----------- 67

Query: 97  ARNHHRRSAGSYVSNFCWDL-LHPKHKTSGRGGGGGGASNNNINAAVSNGGDPLLARRCA 156
              HHR S+ +  +N   D  +H          GG   +++     V++     L RRCA
Sbjct: 68  ---HHRFSSAN-SNNISGDFYIH----------GGNAKTSSYKKGGVAHS----LPRRCA 127

Query: 157 NCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAATV-----NSSVAE--------- 216
           +CDTTSTPLWRNGP+GPKSLCNACGIRFKKEERRA A  +      SS AE         
Sbjct: 128 SCDTTSTPLWRNGPKGPKSLCNACGIRFKKEERRATARNLTISGGGSSAAEVPVENSYNG 187

Query: 217 --SNHHHHHHHHPMFNGSYTNSNTW-VPQQLPATTQKHPCLSAAIGNEDVGPENGISFLS 260
             + + HHHHH+   + S+ + NT  VP   P    ++P +     +         SF+S
Sbjct: 188 GGNYYSHHHHHYASSSPSWAHQNTQRVPYFSPVPEMEYPYVDNVTAS---------SFMS 207

[Close]
BLAST of Cucsat.G12007 vs. NCBI nr
Match: KGN53323.2 (hypothetical protein Csa_015092 [Cucumis sativus])

HSP 1 Score: 544 bits (1402), Expect = 2.44e-194
Identity = 269/278 (96.76%), Postives = 270/278 (97.12%), Query Frame = 0 

Query: 1   FPNSFSSTPLSPPPHKPQFHSKIMMHHYGGGGGGSASSFSVFLSVPNHGAADMYSSSTNY 60
           FP  F      PPPHKPQF+SKIMMHHYGGGGGGSASSFSVFLSVPNHGAADMYSSSTNY
Sbjct: 44  FPQLFLFYSPLPPPHKPQFYSKIMMHHYGGGGGGSASSFSVFLSVPNHGAADMYSSSTNY 103

Query: 61  ASSSSSPSSVDCTLSLGTPSTRSSEFDGDKRAAAAAARNHHRRSAGSYVSNFCWDLLHPK 120
           ASSSSSPSSVDCTLSLGTPSTRSSEFDGDKRAAAAAARNHHRRSAGSYVSNFCWDLLHPK
Sbjct: 104 ASSSSSPSSVDCTLSLGTPSTRSSEFDGDKRAAAAAARNHHRRSAGSYVSNFCWDLLHPK 163

Query: 121 HKTSGRGGGGGGASNNNINAAVSNGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACG 180
           HKTSGRGGGGGGASNNNINAAVSNGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACG
Sbjct: 164 HKTSGRGGGGGGASNNNINAAVSNGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACG 223

Query: 181 IRFKKEERRAAAATVNSSVAESNHHHHHHHHPMFNGSYTNSNTWVPQQLPATTQKHPCLS 240
           IRFKKEERRAAAATVNSSVAESNHHHHHHHHPMFNGSYTNSNTWVPQQLPATTQKHPCLS
Sbjct: 224 IRFKKEERRAAAATVNSSVAESNHHHHHHHHPMFNGSYTNSNTWVPQQLPATTQKHPCLS 283

Query: 241 AAIGNEDVGPENGISFLSWRLNVANTDHRPTLVHDFTR 278
           AAIGNEDVGPENGISFLSWRLNVANTDHRPTLVHDFTR
Sbjct: 284 AAIGNEDVGPENGISFLSWRLNVANTDHRPTLVHDFTR 321

[Close]
BLAST of Cucsat.G12007 vs. NCBI nr
Match: XP_004146553.2 (GATA transcription factor 18 isoform X1 [Cucumis sativus])

HSP 1 Score: 519 bits (1337), Expect = 1.74e-185
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0 

Query: 24  MMHHYGGGGGGSASSFSVFLSVPNHGAADMYSSSTNYASSSSSPSSVDCTLSLGTPSTRS 83
           MMHHYGGGGGGSASSFSVFLSVPNHGAADMYSSSTNYASSSSSPSSVDCTLSLGTPSTRS
Sbjct: 1   MMHHYGGGGGGSASSFSVFLSVPNHGAADMYSSSTNYASSSSSPSSVDCTLSLGTPSTRS 60

Query: 84  SEFDGDKRAAAAAARNHHRRSAGSYVSNFCWDLLHPKHKTSGRGGGGGGASNNNINAAVS 143
           SEFDGDKRAAAAAARNHHRRSAGSYVSNFCWDLLHPKHKTSGRGGGGGGASNNNINAAVS
Sbjct: 61  SEFDGDKRAAAAAARNHHRRSAGSYVSNFCWDLLHPKHKTSGRGGGGGGASNNNINAAVS 120

Query: 144 NGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAATVNSSVAESN 203
           NGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAATVNSSVAESN
Sbjct: 121 NGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAATVNSSVAESN 180

Query: 204 HHHHHHHHPMFNGSYTNSNTWVPQQLPATTQKHPCLSAAIGNEDVGPENGISFLSWRLNV 263
           HHHHHHHHPMFNGSYTNSNTWVPQQLPATTQKHPCLSAAIGNEDVGPENGISFLSWRLNV
Sbjct: 181 HHHHHHHHPMFNGSYTNSNTWVPQQLPATTQKHPCLSAAIGNEDVGPENGISFLSWRLNV 240

Query: 264 ANTDHRPTLVHDFTR 278
           ANTDHRPTLVHDFTR
Sbjct: 241 ANTDHRPTLVHDFTR 255

[Close]
BLAST of Cucsat.G12007 vs. NCBI nr
Match: XP_008452087.1 (PREDICTED: GATA transcription factor 18-like [Cucumis melo])

HSP 1 Score: 452 bits (1162), Expect = 7.86e-159
Identity = 235/262 (89.69%), Postives = 238/262 (90.84%), Query Frame = 0 

Query: 24  MMHHYGGGGGGS---ASSFSVFLSVPNHGAADMYSSSTNYASSSSS----PSSVDCTLSL 83
           MMHHYGGGGGG    ASSFS+FLSVPNHGAADMYSSSTNYASSSSS    PSSVDCTLSL
Sbjct: 1   MMHHYGGGGGGGGGGASSFSLFLSVPNHGAADMYSSSTNYASSSSSSSSSPSSVDCTLSL 60

Query: 84  GTPSTRSSEFDGDKRAAAAAARNHHRRSAGSYVSNFCWDLLHPKHKTSGRGGGGGGASNN 143
           GTPSTRSSEFD DKR   AAARN HRRSAGSYVSNFCWDLLHPKHKTSGR G GG ASNN
Sbjct: 61  GTPSTRSSEFDSDKR---AAARNPHRRSAGSYVSNFCWDLLHPKHKTSGR-GAGGAASNN 120

Query: 144 NINAAVSNGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAATVN 203
           NI AAVSN GDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAATVN
Sbjct: 121 NITAAVSNSGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAATVN 180

Query: 204 SSVAESNHHHHHHHHPMFNGSYTNSNTWVPQQLPATTQKHPCLSAAIGNEDVGPENGISF 263
           SS AESNHHHH     MFNGSYTNS+TWVPQQLPATTQKHPCLSAAIGN+DVGPENGISF
Sbjct: 181 SSTAESNHHHH----SMFNGSYTNSSTWVPQQLPATTQKHPCLSAAIGNDDVGPENGISF 240

Query: 264 LSWRLNVANTDHRPTLVHDFTR 278
           LSWRLNVANTDHRPTLVHDFTR
Sbjct: 241 LSWRLNVANTDHRPTLVHDFTR 254

[Close]
BLAST of Cucsat.G12007 vs. NCBI nr
Match: XP_038875549.1 (GATA transcription factor 18-like [Benincasa hispida])

HSP 1 Score: 436 bits (1122), Expect = 7.30e-153
Identity = 224/256 (87.50%), Postives = 233/256 (91.02%), Query Frame = 0 

Query: 24  MMHHYGGGGGGSASSFSVFLSVPNHGAADMYSSSTNYASSSSSPSSVDCTLSLGTPSTRS 83
           MMHHYGGGGGG ASSFSVFLSVPNHGAADMYSSSTNYASSSSSPSSVDCTLSLGTPSTRS
Sbjct: 1   MMHHYGGGGGG-ASSFSVFLSVPNHGAADMYSSSTNYASSSSSPSSVDCTLSLGTPSTRS 60

Query: 84  SEFDGDKRAAAAAARNHHRRSAGSYVSNFCWDLLHPKHKTSGRGGGGGGASNNNINAAVS 143
           SEFD DKR   AAARNHHRRSAGSYVSNFCWDLLHPKHKTSGR      A  NN+ AAV+
Sbjct: 61  SEFDADKR---AAARNHHRRSAGSYVSNFCWDLLHPKHKTSGR----AAAPPNNLTAAVT 120

Query: 144 NGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAATVNSSVAESN 203
           +G DPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAATVNS+ AESN
Sbjct: 121 SGADPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAATVNSTAAESN 180

Query: 204 HHHHHHHHP-MFNGSYTNSNTWVPQQLPATTQKHPCLSAAIGNEDVGPENGISFLSWRLN 263
           HHHH HHHP MFNG+YTNS+TWVPQQ P  +QKHPCLSAAIGN++  PENGISFLSWRLN
Sbjct: 181 HHHHLHHHPIMFNGNYTNSSTWVPQQSPTMSQKHPCLSAAIGNDE--PENGISFLSWRLN 240

Query: 264 VANTDHRPTLVHDFTR 278
           VANTDHRPTLVHDFTR
Sbjct: 241 VANTDHRPTLVHDFTR 246

[Close]
BLAST of Cucsat.G12007 vs. NCBI nr
Match: KAA0044793.1 (GATA transcription factor 18-like [Cucumis melo var. makuwa])

HSP 1 Score: 408 bits (1049), Expect = 3.51e-142
Identity = 208/226 (92.04%), Postives = 210/226 (92.92%), Query Frame = 0 

Query: 53  MYSSSTNYASSSSSPSSVDCTLSLGTPSTRSSEFDGDKRAAAAAARNHHRRSAGSYVSNF 112
           MYSSSTNYASSSSSPSSVDCTLSLGTPSTRSSEFD DKR   AAARN HRRSAGSYVSNF
Sbjct: 1   MYSSSTNYASSSSSPSSVDCTLSLGTPSTRSSEFDSDKR---AAARNPHRRSAGSYVSNF 60

Query: 113 CWDLLHPKHKTSGRGGGGGGASNNNINAAVSNGGDPLLARRCANCDTTSTPLWRNGPRGP 172
           CWDLLHPKHKTSGR G  G ASNNNI AAVSNGGDPLLARRCANCDTTSTPLWRNGPRGP
Sbjct: 61  CWDLLHPKHKTSGR-GAVGAASNNNITAAVSNGGDPLLARRCANCDTTSTPLWRNGPRGP 120

Query: 173 KSLCNACGIRFKKEERRAAAATVNSSVAESNHHHHHHHHPMFNGSYTNSNTWVPQQLPAT 232
           KSLCNACGIRFKKEERRAAAATVNSS AESNHHHH     MFNGSYTNS+TWVPQQLPAT
Sbjct: 121 KSLCNACGIRFKKEERRAAAATVNSSTAESNHHHH----SMFNGSYTNSSTWVPQQLPAT 180

Query: 233 TQKHPCLSAAIGNEDVGPENGISFLSWRLNVANTDHRPTLVHDFTR 278
           TQKHPCLSAAIGN+DVGPENGISFLSWRLNVANTDHRPTLVHDFTR
Sbjct: 181 TQKHPCLSAAIGNDDVGPENGISFLSWRLNVANTDHRPTLVHDFTR 218

[Close]
BLAST of Cucsat.G12007 vs. ExPASy TrEMBL
Match: A0A0A0KY15 (GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G046650 PE=3 SV=1)

HSP 1 Score: 519 bits (1337), Expect = 8.42e-186
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0 

Query: 24  MMHHYGGGGGGSASSFSVFLSVPNHGAADMYSSSTNYASSSSSPSSVDCTLSLGTPSTRS 83
           MMHHYGGGGGGSASSFSVFLSVPNHGAADMYSSSTNYASSSSSPSSVDCTLSLGTPSTRS
Sbjct: 1   MMHHYGGGGGGSASSFSVFLSVPNHGAADMYSSSTNYASSSSSPSSVDCTLSLGTPSTRS 60

Query: 84  SEFDGDKRAAAAAARNHHRRSAGSYVSNFCWDLLHPKHKTSGRGGGGGGASNNNINAAVS 143
           SEFDGDKRAAAAAARNHHRRSAGSYVSNFCWDLLHPKHKTSGRGGGGGGASNNNINAAVS
Sbjct: 61  SEFDGDKRAAAAAARNHHRRSAGSYVSNFCWDLLHPKHKTSGRGGGGGGASNNNINAAVS 120

Query: 144 NGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAATVNSSVAESN 203
           NGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAATVNSSVAESN
Sbjct: 121 NGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAATVNSSVAESN 180

Query: 204 HHHHHHHHPMFNGSYTNSNTWVPQQLPATTQKHPCLSAAIGNEDVGPENGISFLSWRLNV 263
           HHHHHHHHPMFNGSYTNSNTWVPQQLPATTQKHPCLSAAIGNEDVGPENGISFLSWRLNV
Sbjct: 181 HHHHHHHHPMFNGSYTNSNTWVPQQLPATTQKHPCLSAAIGNEDVGPENGISFLSWRLNV 240

Query: 264 ANTDHRPTLVHDFTR 278
           ANTDHRPTLVHDFTR
Sbjct: 241 ANTDHRPTLVHDFTR 255

[Close]
BLAST of Cucsat.G12007 vs. ExPASy TrEMBL
Match: A0A1S3BSF9 (GATA transcription factor 18-like OS=Cucumis melo OX=3656 GN=LOC103493199 PE=3 SV=1)

HSP 1 Score: 452 bits (1162), Expect = 3.80e-159
Identity = 235/262 (89.69%), Postives = 238/262 (90.84%), Query Frame = 0 

Query: 24  MMHHYGGGGGGS---ASSFSVFLSVPNHGAADMYSSSTNYASSSSS----PSSVDCTLSL 83
           MMHHYGGGGGG    ASSFS+FLSVPNHGAADMYSSSTNYASSSSS    PSSVDCTLSL
Sbjct: 1   MMHHYGGGGGGGGGGASSFSLFLSVPNHGAADMYSSSTNYASSSSSSSSSPSSVDCTLSL 60

Query: 84  GTPSTRSSEFDGDKRAAAAAARNHHRRSAGSYVSNFCWDLLHPKHKTSGRGGGGGGASNN 143
           GTPSTRSSEFD DKR   AAARN HRRSAGSYVSNFCWDLLHPKHKTSGR G GG ASNN
Sbjct: 61  GTPSTRSSEFDSDKR---AAARNPHRRSAGSYVSNFCWDLLHPKHKTSGR-GAGGAASNN 120

Query: 144 NINAAVSNGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAATVN 203
           NI AAVSN GDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAATVN
Sbjct: 121 NITAAVSNSGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAATVN 180

Query: 204 SSVAESNHHHHHHHHPMFNGSYTNSNTWVPQQLPATTQKHPCLSAAIGNEDVGPENGISF 263
           SS AESNHHHH     MFNGSYTNS+TWVPQQLPATTQKHPCLSAAIGN+DVGPENGISF
Sbjct: 181 SSTAESNHHHH----SMFNGSYTNSSTWVPQQLPATTQKHPCLSAAIGNDDVGPENGISF 240

Query: 264 LSWRLNVANTDHRPTLVHDFTR 278
           LSWRLNVANTDHRPTLVHDFTR
Sbjct: 241 LSWRLNVANTDHRPTLVHDFTR 254

[Close]
BLAST of Cucsat.G12007 vs. ExPASy TrEMBL
Match: A0A5A7TMS0 (GATA transcription factor 18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00840 PE=3 SV=1)

HSP 1 Score: 408 bits (1049), Expect = 1.70e-142
Identity = 208/226 (92.04%), Postives = 210/226 (92.92%), Query Frame = 0 

Query: 53  MYSSSTNYASSSSSPSSVDCTLSLGTPSTRSSEFDGDKRAAAAAARNHHRRSAGSYVSNF 112
           MYSSSTNYASSSSSPSSVDCTLSLGTPSTRSSEFD DKR   AAARN HRRSAGSYVSNF
Sbjct: 1   MYSSSTNYASSSSSPSSVDCTLSLGTPSTRSSEFDSDKR---AAARNPHRRSAGSYVSNF 60

Query: 113 CWDLLHPKHKTSGRGGGGGGASNNNINAAVSNGGDPLLARRCANCDTTSTPLWRNGPRGP 172
           CWDLLHPKHKTSGR G  G ASNNNI AAVSNGGDPLLARRCANCDTTSTPLWRNGPRGP
Sbjct: 61  CWDLLHPKHKTSGR-GAVGAASNNNITAAVSNGGDPLLARRCANCDTTSTPLWRNGPRGP 120

Query: 173 KSLCNACGIRFKKEERRAAAATVNSSVAESNHHHHHHHHPMFNGSYTNSNTWVPQQLPAT 232
           KSLCNACGIRFKKEERRAAAATVNSS AESNHHHH     MFNGSYTNS+TWVPQQLPAT
Sbjct: 121 KSLCNACGIRFKKEERRAAAATVNSSTAESNHHHH----SMFNGSYTNSSTWVPQQLPAT 180

Query: 233 TQKHPCLSAAIGNEDVGPENGISFLSWRLNVANTDHRPTLVHDFTR 278
           TQKHPCLSAAIGN+DVGPENGISFLSWRLNVANTDHRPTLVHDFTR
Sbjct: 181 TQKHPCLSAAIGNDDVGPENGISFLSWRLNVANTDHRPTLVHDFTR 218

[Close]
BLAST of Cucsat.G12007 vs. ExPASy TrEMBL
Match: A0A5D3CZ78 (GATA transcription factor 18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005010 PE=3 SV=1)

HSP 1 Score: 404 bits (1037), Expect = 1.32e-140
Identity = 208/230 (90.43%), Postives = 210/230 (91.30%), Query Frame = 0 

Query: 53  MYSSSTNYASSSSS----PSSVDCTLSLGTPSTRSSEFDGDKRAAAAAARNHHRRSAGSY 112
           MYSSSTNYASSSSS    PSSVDCTLSLGTPSTRSSEFD DKR   AAARN HRRSAGSY
Sbjct: 1   MYSSSTNYASSSSSSSSSPSSVDCTLSLGTPSTRSSEFDSDKR---AAARNPHRRSAGSY 60

Query: 113 VSNFCWDLLHPKHKTSGRGGGGGGASNNNINAAVSNGGDPLLARRCANCDTTSTPLWRNG 172
           VSNFCWDLLHPKHKTSGR G GG ASNNNI AAVSN GDPLLARRCANCDTTSTPLWRNG
Sbjct: 61  VSNFCWDLLHPKHKTSGR-GAGGAASNNNITAAVSNSGDPLLARRCANCDTTSTPLWRNG 120

Query: 173 PRGPKSLCNACGIRFKKEERRAAAATVNSSVAESNHHHHHHHHPMFNGSYTNSNTWVPQQ 232
           PRGPKSLCNACGIRFKKEERRAAAATVNSS AESNHHHH     MFNGSYTNS+TWVPQQ
Sbjct: 121 PRGPKSLCNACGIRFKKEERRAAAATVNSSTAESNHHHH----SMFNGSYTNSSTWVPQQ 180

Query: 233 LPATTQKHPCLSAAIGNEDVGPENGISFLSWRLNVANTDHRPTLVHDFTR 278
           LPATTQKHPCLSAAIGN+DVGPENGISFLSWRLNVANTDHRPTLVHDFTR
Sbjct: 181 LPATTQKHPCLSAAIGNDDVGPENGISFLSWRLNVANTDHRPTLVHDFTR 222

[Close]
BLAST of Cucsat.G12007 vs. ExPASy TrEMBL
Match: A0A6J1FQ08 (GATA transcription factor 19-like OS=Cucurbita moschata OX=3662 GN=LOC111447753 PE=3 SV=1)

HSP 1 Score: 346 bits (887), Expect = 4.06e-117
Identity = 201/280 (71.79%), Postives = 213/280 (76.07%), Query Frame = 0 

Query: 24  MMHHYGGGGGGSASSFSVFLSVPNHGAA-----DMYSSSTNYASSSSS----PSSVDCTL 83
           MMHH GGG GG+ASSFSVFLSVPNHG A     D+YS+  NYASSSSS    PSSVDCTL
Sbjct: 1   MMHHCGGGAGGAASSFSVFLSVPNHGGAAHDMMDIYSN--NYASSSSSSSSSPSSVDCTL 60

Query: 84  SLGTPSTRSSEFDGDKRAAAAAARNHHRRSAGSYVSNFCWDLLHPKHKTSGRGGGGGGAS 143
           SLGTPSTRSSEFD DKR    AA  HHRRSAGSYVSNFCWDLLHPKHK++GR      AS
Sbjct: 61  SLGTPSTRSSEFDSDKR----AAPRHHRRSAGSYVSNFCWDLLHPKHKSAGR----STAS 120

Query: 144 NNNINAAVSNGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAA- 203
           N    AAV +GGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAA  
Sbjct: 121 NA---AAVPSGGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAATV 180

Query: 204 --TVNSSVAESNHHHH-HHHHPMFNGSYTNSNT-WVPQQLPATTQKHPCLSAA------- 263
             T  +  AESN+HHH H HH MFNG+YTNS   WVP   P  TQK PCLSAA       
Sbjct: 181 NCTATAMAAESNNHHHLHQHHQMFNGNYTNSTAAWVPHHSPVATQKLPCLSAAAINNESM 240

Query: 264 -IGNEDVG---PENGISFLSWRLNVANTDHRPTLVHDFTR 278
            IGN+DV     ENGIS+LSWRLNV  TDHRP+LVHDFTR
Sbjct: 241 FIGNDDVRRTEQENGISYLSWRLNV--TDHRPSLVHDFTR 265

The following BLAST results are available for this feature:
BLAST of Cucsat.G12007 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LC795.8e-4340.50GATA transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=GATA18 PE=1 SV=2[more]
Q6QPM21.2e-3244.21GATA transcription factor 19 OS=Arabidopsis thaliana OX=3702 GN=GATA19 PE=1 SV=2[more]
B8AX513.1e-2839.11GATA transcription factor 15 OS=Oryza sativa subsp. indica OX=39946 GN=GATA15 PE... [more]
Q6L5E51.2e-2739.19GATA transcription factor 15 OS=Oryza sativa subsp. japonica OX=39947 GN=GATA15 ... [more]
Q9ZPX04.6e-2438.17GATA transcription factor 20 OS=Arabidopsis thaliana OX=3702 GN=GATA20 PE=2 SV=2[more]
BLAST of Cucsat.G12007 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53323.22.44e-19496.76hypothetical protein Csa_015092 [Cucumis sativus][more]
XP_004146553.21.74e-185100.00GATA transcription factor 18 isoform X1 [Cucumis sativus][more]
XP_008452087.17.86e-15989.69PREDICTED: GATA transcription factor 18-like [Cucumis melo][more]
XP_038875549.17.30e-15387.50GATA transcription factor 18-like [Benincasa hispida][more]
KAA0044793.13.51e-14292.04GATA transcription factor 18-like [Cucumis melo var. makuwa][more]
BLAST of Cucsat.G12007 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY158.42e-186100.00GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G046650 P... [more]
A0A1S3BSF93.80e-15989.69GATA transcription factor 18-like OS=Cucumis melo OX=3656 GN=LOC103493199 PE=3 S... [more]
A0A5A7TMS01.70e-14292.04GATA transcription factor 18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3CZ781.32e-14090.43GATA transcription factor 18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A6J1FQ084.06e-11771.79GATA transcription factor 19-like OS=Cucurbita moschata OX=3662 GN=LOC111447753 ... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000679Zinc finger, GATA-typeSMARTSM00401GATA_3coord: 148..200
e-value: 4.0E-20
score: 82.9
IPR000679Zinc finger, GATA-typePFAMPF00320GATAcoord: 154..188
e-value: 7.0E-18
score: 63.9
IPR000679Zinc finger, GATA-typePROSITEPS00344GATA_ZN_FINGER_1coord: 154..179
IPR000679Zinc finger, GATA-typePROSITEPS50114GATA_ZN_FINGER_2coord: 148..184
score: 13.889895
IPR000679Zinc finger, GATA-typeCDDcd00202ZnF_GATAcoord: 153..185
e-value: 4.67789E-14
score: 63.1606
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 150..211
e-value: 1.2E-16
score: 62.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..83
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 151..198
IPR044272GATA transcription factor 18/19/20PANTHERPTHR46813GATA TRANSCRIPTION FACTOR 18coord: 34..275

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G12007.T1Cucsat.G12007.T1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009908 flower development
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding