Cucsat.G12003 (gene) Cucumber (B10) v3

Overview
NameCucsat.G12003
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionSmall nuclear ribonucleoprotein Sm D2
Locationctg1820: 4817082 .. 4819916 (-)
RNA-Seq ExpressionCucsat.G12003
SyntenyCucsat.G12003
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAAACCTCGCGTTTAGGGTTTTTTCATCCTTTTTTTTTCTTTTTTGAAAAAGAGCAATATGAACCTTAGTTTTTCCACGCGCGAGCCATTTCTCCTGCTCATCTTCTCCTTCGATCTTCTTCTTTATTCTTCGCCACTTCGCCGCCCTCCTCTCCCTTTCCTTCACCTTCACTCTTCTTCTCTCCCGCCGGTAAGTGTTCTCTCTCTTTCTCTCTCCATCTCACTCTCCGTTTCGTTTTACAGCTACTCTTTCTTTCTCTCTTCGTTTAGTTTCACTGTTTCCTCCTACTGAATTTTTTATGCAGTTTCCCCCATTACTTTGTTCTTAAGATATTGCATCTGACTTATATGTTATTTTCTAAGATATTGCATCTCTTCTCTCGCTGTGAATTTTTCTTGAATAGTTTAACCTAGACTTTGGTCTCTCTGGAGCATGATGTTCTTTAGAGTTTAGGGTAACCTTAGGAACATACTGTTTATGAAATTATGCTGGTGCGGTTTTATTTACTGTCATTCTTTCTATGTGCTTATGGTCGTATGTTTGTCATGTAATTGCAGCCTCACTCCAAGGACATTGCCCAGGATCTACTTCCACTTACAACATGAGGTATTGTGTTTTTCGGTATTTGTATACTTTGTTTGTTCGCACATCTTGGTCTTTTTTGTTCTTTTACTAAATTCTTTACATACTAATGGGTTTCGTGTCCTCTTTTTTGTCTTCAATTGCAGCCGACCGATGGAGGAAGATGTAAGTTCCTTCAGTCTGTTATGCTTTCAATTTTAGTACTTTCATCCAATATATGTTGCCTTTGCCTAATTGGTCTAGCCTCTATATTAGCACAAGTGTTAAAGAATCATGACTTGCTCTCGAGTCATTACCAACGCTTTTCATTGTATAATCTCTGCGGCTTCTTTTTCTTTTCGTCTACACAACTCTTTTAAGTTGGAAGAAAATGTTGTCCTTCGTATCGAAAAATCATGATATTTTTTTCCACAACTGTTCGACTAGTCCACATGAAGCAACTATTAGACTCTTTCAATTGAAGTTATTAATTTTTGGGTAAGGTTTTGTCATGTTTTTTTAATTAGTCTATTTATTTTTTAAACCTTTAGTTAAAAAGGTCGGCTTCATGTCAAATTTAAATATAACCAAATTCTACTGGTTGAATGATATTTTTATATATTGAGAGTTGATGCTCATAAACCATTTGACAAGTTCAACTGGCCTTTGTGTTTGGACCAGGAAGGCCAGATATTTTTTATGTCTTCAAAAAGAAATTTTCTTATTTTCTATCATTCACCTGGCTACCGTGAATGATGTTTCTTGAACCTCTAGTAGAGCAATACCAGTTCTATGTTGGGAATTCGTTGGTAGTTGGTCTTTTAAAAGGGTTTAATTATTAGCATTGTAATTTCTTTCTCAATAAAAATCTATTTGTTTCTGTTAAATGTGAAATTTTTGCTATCTTTCAGGTGCTATGATTAGCAAGAAATGATATGATTTCTTGAGACTAGTTTTGTACCTTTTTAAGTGAAACTGATGATCTTTTGATTCAGTTCTGTTTTCTCTTTCAACTTTGTTTCTATAGTTGGTTAATGTATTTTTTTCCCTATCCATTTGATGGTTGTTTACCAACTTCTTACACTTTTGCATTCTACTTATGAAAAAATGTTTAGTTTTTAATTAAAAAAAAATGAACTGTGACTTTTCCATGAAACTCATTTCAATAAGTAAATTACCATAAAGGTTTCATTTTTTCTTTCTTTCTAGTGTTAGCTTAATGTTCTCTCTCTAGAGTTTTTTTTTTTCTTGGTTTAATCTCTCGAGTCACCCTTCCTTAGTTTGTTCCTGTCATACTGCAAAATCCTTGGACTTGTGTTCTATTTTTTTTTTTGACTTCCAACTCTACTGAAGTGTTTCTACAAACACAATTACGAATTACTTGCTTTGAACTCTCTGCAGACTAGCAAGAATGAGGAAGAGGAGTTCAATACTGGTCCACTTTCCGTGCTCATGATGAGTGTTAAAAATAACACTCAGGTATGCATTTGTTTGTGTGTTTAACAGTTCCACTTGTAAATCAAGGCATAACTGTTCAAGTGAAAATGATGTTTATATGTTTTGGACCTTCTTGACAGGTTCTCATAAATTGCCGCAATAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTTGACCGGCATTGTAATATGGTTCTGGAAAACGTTAGAGAGATGTGGACTGAGGTTTGTCTTATTGATGTGTGCTTACTATTTACTCTTTTTCTTGCTTAGACTCAAGTCATGGATCTTATGTTGTATTACTATGACCAGGTACCTAAAACTGGGAAGGGCAAGAAAAAGGCTCAGCCTGTTAACAAGGACAGATTTATCAGCAAGATGTTCCTGAGAGGAGACTCGGTCATTATTGTTCTTAGGAATCCCAAGTAAGAAGAGTTGATCATCTCATCATATGTTCGGTTTGGATTCTCAAGTCAACTCCATTTGTCTACCAATCTTTTTTGCTTGTCATCAAACTTTCATTTGATAGCCTGACGGTCTGCTAAGCTTGGGGCTATCTATATCAGTTTGTAGTTCGTTTTGATTTTTCATTCCCGCAAACCATTTACCAAATATTGTAACTCTAGAAAGTGTATTTGTTTAGGTATGGGAGATTATTAGTAGAAATGCCATATGTTTTTAACGTGTGTATTGAATAGAGTTTATCTTTGCAACTGTTGAGACGTTATCTGTTTTGATCACAAGTGGATATTATCATTCGTAATTACGAGGATCTTTTGGGCATGGTAGATGATGTGCTGTTTCTCTAGTCTTGTTCCTTGTTGCATATGTTCATGTGATACCAAGGAATCAAATTTTCATCGGGATGTCAGTGTTTGTTTGTTGTGTTCATAAATCTTAGGGTTCAGCAATCATCAGTTGCTTTTGCATTTGTGCACACTCAATTACTCTTCAACTTAT

Coding sequence (CDS)

ATGAGCCGACCGATGGAGGAAGATACTAGCAAGAATGAGGAAGAGGAGTTCAATACTGGTCCACTTTCCGTGCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTCATAAATTGCCGCAATAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTTGACCGGCATTGTAATATGGTTCTGGAAAACGTTAGAGAGATGTGGACTGAGGTACCTAAAACTGGGAAGGGCAAGAAAAAGGCTCAGCCTGTTAACAAGGACAGATTTATCAGCAAGATGTTCCTGAGAGGAGACTCGGTCATTATTGTTCTTAGGAATCCCAAGTAA

Protein sequence

MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Homology
[Close]
BLAST of Cucsat.G12003 vs. ExPASy Swiss-Prot
Match: Q3SZF8 (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.3e-45
Identity = 87/100 (87.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 3   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 62
           E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 63  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 103
           WTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74  WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Cucsat.G12003 vs. ExPASy Swiss-Prot
Match: P62316 (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.3e-45
Identity = 87/100 (87.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 3   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 62
           E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 63  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 103
           WTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74  WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Cucsat.G12003 vs. ExPASy Swiss-Prot
Match: P62317 (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.3e-45
Identity = 87/100 (87.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 3   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 62
           E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 63  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 103
           WTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74  WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Cucsat.G12003 vs. ExPASy Swiss-Prot
Match: Q9VI10 (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=7227 GN=SmD2 PE=1 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 5.1e-45
Identity = 86/100 (86.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 3   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 62
           E+ ++ EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 13  EELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 72

Query: 63  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 103
           WTE+P+TGKGKKK +PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 73  WTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112

[Close]
BLAST of Cucsat.G12003 vs. ExPASy Swiss-Prot
Match: Q18786 (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans OX=6239 GN=snr-4 PE=1 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.4e-41
Identity = 81/100 (81.00%), Postives = 91/100 (91.00%), Query Frame = 0 

Query: 3   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 62
           E+ +  E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 63  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 103
           WTEVPKTGKGKKKA+ V KDRFISKMFLRGDSVI+V++NP
Sbjct: 74  WTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113

[Close]
BLAST of Cucsat.G12003 vs. NCBI nr
Match: XP_004146504.1 (small nuclear ribonucleoprotein Sm D2 [Cucumis sativus] >XP_008452073.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_008452074.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_008452075.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_022929177.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata] >XP_022985082.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima] >XP_023551877.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita pepo subsp. pepo] >KAE8649185.1 hypothetical protein Csa_014590 [Cucumis sativus])

HSP 1 Score: 205 bits (521), Expect = 2.11e-66
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 60
           MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 5   MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 64

Query: 61  EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 103
           EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 65  EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Cucsat.G12003 vs. NCBI nr
Match: KAA0044802.1 (small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa] >TYK16662.1 small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa])

HSP 1 Score: 205 bits (521), Expect = 4.90e-66
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 60
           MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 31  MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 90

Query: 61  EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 103
           EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 91  EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 133

[Close]
BLAST of Cucsat.G12003 vs. NCBI nr
Match: XP_022983472.1 (small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima])

HSP 1 Score: 204 bits (518), Expect = 6.06e-66
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 60
           MEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 5   MEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 64

Query: 61  EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 103
           EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 65  EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Cucsat.G12003 vs. NCBI nr
Match: XP_027340559.1 (small nuclear ribonucleoprotein Sm D2-like [Abrus precatorius])

HSP 1 Score: 204 bits (518), Expect = 6.06e-66
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 60
           MEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 5   MEEDTTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 64

Query: 61  EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 103
           EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 65  EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Cucsat.G12003 vs. NCBI nr
Match: XP_022942850.1 (small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata] >XP_023523856.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203 bits (517), Expect = 8.61e-66
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 60
           MEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 5   MEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 64

Query: 61  EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 103
           EMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 65  EMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Cucsat.G12003 vs. ExPASy TrEMBL
Match: A0A1S3BTT5 (Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo OX=3656 GN=LOC103493191 PE=3 SV=1)

HSP 1 Score: 205 bits (521), Expect = 1.02e-66
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 60
           MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 5   MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 64

Query: 61  EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 103
           EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 65  EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Cucsat.G12003 vs. ExPASy TrEMBL
Match: A0A6J1J3W3 (Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita maxima OX=3661 GN=LOC111483160 PE=3 SV=1)

HSP 1 Score: 205 bits (521), Expect = 1.02e-66
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 60
           MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 5   MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 64

Query: 61  EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 103
           EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 65  EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Cucsat.G12003 vs. ExPASy TrEMBL
Match: A0A6J1EM19 (Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita moschata OX=3662 GN=LOC111435853 PE=3 SV=1)

HSP 1 Score: 205 bits (521), Expect = 1.02e-66
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 60
           MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 5   MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 64

Query: 61  EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 103
           EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 65  EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Cucsat.G12003 vs. ExPASy TrEMBL
Match: A0A5A7TNA0 (Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004930 PE=3 SV=1)

HSP 1 Score: 205 bits (521), Expect = 2.37e-66
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 60
           MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 31  MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 90

Query: 61  EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 103
           EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 91  EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 133

[Close]
BLAST of Cucsat.G12003 vs. ExPASy TrEMBL
Match: A0A6J1IZE4 (Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita maxima OX=3661 GN=LOC111482063 PE=3 SV=1)

HSP 1 Score: 204 bits (518), Expect = 2.93e-66
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 60
           MEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 5   MEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 64

Query: 61  EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 103
           EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 65  EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

The following BLAST results are available for this feature:
BLAST of Cucsat.G12003 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3SZF82.3e-4587.00Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1[more]
P623162.3e-4587.00Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=... [more]
P623172.3e-4587.00Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV... [more]
Q9VI105.1e-4586.00Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=722... [more]
Q187863.4e-4181.00Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans OX=6239... [more]
BLAST of Cucsat.G12003 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146504.12.11e-66100.00small nuclear ribonucleoprotein Sm D2 [Cucumis sativus] >XP_008452073.1 PREDICTE... [more]
KAA0044802.14.90e-66100.00small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa] >TYK16662.... [more]
XP_022983472.16.06e-6699.03small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima][more]
XP_027340559.16.06e-6699.03small nuclear ribonucleoprotein Sm D2-like [Abrus precatorius][more]
XP_022942850.18.61e-6698.06small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata] >XP_023523856.1 ... [more]
BLAST of Cucsat.G12003 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BTT51.02e-66100.00Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo OX=3656 GN=LOC103493191 PE... [more]
A0A6J1J3W31.02e-66100.00Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita maxima OX=3661 GN=LOC11148316... [more]
A0A6J1EM191.02e-66100.00Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita moschata OX=3662 GN=LOC111435... [more]
A0A5A7TNA02.37e-66100.00Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A6J1IZE42.93e-6699.03Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita maxima OX=3661 GN=LOC11148206... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 25..104
e-value: 5.1E-20
score: 82.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 28..102
e-value: 6.2E-19
score: 67.5
NoneNo IPR availableGENE3D2.30.30.100coord: 15..107
e-value: 6.9E-42
score: 143.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR12777:SF6SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 1..107
IPR027248Small nuclear ribonucleoprotein Sm D2PANTHERPTHR12777SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 1..107
IPR027248Small nuclear ribonucleoprotein Sm D2CDDcd01720Sm_D2coord: 17..106
e-value: 9.06339E-62
score: 180.99
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 20..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G12003.T1Cucsat.G12003.T1mRNA
Cucsat.G12003.T5Cucsat.G12003.T5mRNA
Cucsat.G12003.T7Cucsat.G12003.T7mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0008380 RNA splicing
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0030532 small nuclear ribonucleoprotein complex