Cucsat.G11896 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G11896
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial
Location	ctg1820: 2726473 .. 2728037 (-)
RNA-Seq Expression	Cucsat.G11896
Synteny	Cucsat.G11896

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTCATTTTTTGTCTTTTTTGTTTCAACCTTCTCCCATGGCGACTCAGCTCTTCTCTTTGTTTTCACGTTCCTTTCTCACTCCACCGGAGTCCCCCATCTCCGTCTCTTCTCACTCCTCTTCCTCCCTTCTCCGCCGCCTCCCTCCCCTCGCTGCTATACTCACCGCTGATTTCCCGTCACTCTGCTGCACCGAGCGTGAGGAACTTCTCTACCCGTTCCACTTCTTCGTCTATCAAAGATCCCAATCCTAACTGGTCTAATCGACCACTCATGGAGACCATATTGCTTGATGGCTGTGATTTTGAACACTGGCTCGTTGTCATGGAGAACAACTCACGAGGGATGAGATTATCGACAGCTATATAAAAACGCTTGCCATTGTTGTCTGAAGGTAAATTCTCATTTTCGTATATTGTATTGAATCTCTCTCTCTCTCTTTCCTCCCAACGTTGGGCTATCCTGAATCTGATGATTGCATTTATTCGTGTCTCTTCTGTGTCTTTTTTTCTTCGTTGTGTTGTTCTTGGCTATGTCTTTGTTTTGTATTGATGATATGAAGCTGTACCTTTTCCTCTTCAGAGCTGCCTAAGGTTCGTTGGGTCTTACCTGATTCATACTTGGACGTTAAGAATAAAGATTACGGAGGTTATTCCTGACCCCATTAAGTATGCAAATAATCATTTTATCTCTTTCGGTGTCTAATTTTACAGTCCTCACTCTTTAGTTTTGAAAAGAGGTCAGTCGTTCTGAAGAAGGCTTTATTTCAATTTAAAGCTACTAGAAGTTAAAATTTTCATAATATCATATGTCTTGTTCATTATACATTTTTCTCAGAAAAGAAGTTTGAAATACGTCATTCAAAGATAGTAAGTAGCTTTTCTCTTTACAAAAATGTAGACTATTGAGGGGATAGAATGTTAGCTACTTACTTGAAAAGTTGAAGCTCTTGTATTGTATGATGGTTGAGGATCCTGACTCATTCAGGTCACATTCCTAAGATGATAGAAAGTTTAAAAACTTATCTAAGATTGCAATGCACTCTTGAGCAGACTGTCAATGCACTCTTAATTTGAAAGCCAGTATCTTTTTGTTGTAGTGTCTCCCTTGTTTTGGTTCACTTAAGGCTACAACTATTTTACCTTATTTTGGTGTTGTACAGAACTGTTATCTGACTTTCCGTGTATTTTTTCCCTTTGGCAGGGGGGCCTTTTATAAACGGACAAGCTGCTCCATATGACTCGAAGTACCACGAAGAATGGATTAGAAACAATGCTAAAGCAAATAGTAGGCGTGATGTTAATGGTAGGCGCAATTTCGATAGGTCAAGAAACTTTGAGAAGAGGGAAAACATGCAGAATGGAGAATTTCCAAATAATGTTTCAGCGAGTCAACCTACTGGACCGAAATTGAGTCCACCAGCTCCAAGTAGTACACCCCTCCCAACAACTTTAGTCCTAGCATGCCTCCTCACAACCATGCTGGAATACCCCAAGGCAACTATCCGGGAGGATATCCGAACAATTTTAACAGACCACTGCCTCCGCCACCACCATACAACTTCAACAGCCCACCACCACCTCCTCACAACTTTAACAGGCCACCACCGCAAAACAACTTTAACGGACCACCACCACCATCAAACCCTGGGGGAGCACCGCCAAAGCAACTATTGGGGTGCACCACAGCCAAACTTCAGCAGGCCGCCTGCACAGAACAACTGTGGAGGGATGCAACCTAACGCTGGTGGATGGTCTAATAATGTGCATAACAATCAACAAGAATGGTCGCCAACTGGTCAGGGAAGTCTCAAACTTACGTAATTCATTGATTTTTTTGAATTTAGTTGCTGCTTGGTTCAAACCTCAAATTCTACTAGTCGCTGGTCGCCGAGTGTTCGTTCTGGTGCTTACAAGCGGTCGAGTTTAGTTTTACTTTTTGGAGTAGGCATATGCTTTGGTGTTCTAAATGCAAGTATAGTTTAAAATATTCGTGAGATGTAATTAATTCATAATGTCTCCTTTACTATTGATATT

Coding sequence (CDS)

TTTTTCATTTTTTGTCTTTTTTGTTTCAACCTTCTCCCATGGCGACTCAGCTCTTCTCTTTGTTTTCACGTTCCTTTCTCACTCCACCGGAGTCCCCCATCTCCGTCTCTTCTCACTCCTCTTCCTCCCTTCTCCGCCGCCTCCCTCCCCTCGCTGCTATACTCACCGCTGATTTCCCGTCACTCTGCTGCACCGAGCGTGAGGAACTTCTCTACCCGTTCCACTTCTTCGTCTATCAAAGATCCCAATCCTAACTGGTCTAATCGACCACTCATGGAGACCATATTGCTTGATGGCTGTGATTTTGAACACTGGCTCGTTGTCATGGAGAACAACTCACGAGGGATGAGATTATCGACAGCTATATAA

Protein sequence

FFIFCLFCFNLLPWRLSSSLCFHVPFSLHRSPPSPSLLTPLPPFSAASLPSLLYSPLISRHSAAPSVRNFSTRSTSSSIKDPNPNWSNRPLMETILLDGCDFEHWLVVMENNSRGMRLSTAI

Homology

[Close]

BLAST of Cucsat.G11896 vs. ExPASy Swiss-Prot
Match: Q9LKA5 (Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF8 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.3e-14
Identity = 44/78 (56.41%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 18  PSPSLLTPLPPFSAASLPSLLYSPLISRHSAAPSVRNFSTRSTSSSIKDPNPNWSNRPLM 77
           P+ SLL+   P  AA   S+    L+       SV+  ST++TSSS+ DPNPNWSNRP  
Sbjct: 36  PASSLLSRSRPLVAA-FSSVFRGGLV-------SVKGLSTQATSSSLNDPNPNWSNRPPK 95

Query: 78  ETILLDGCDFEHWLVVME 96
           ETILLDGCDFEHWLVV+E
Sbjct: 96  ETILLDGCDFEHWLVVVE 105

[Close]

BLAST of Cucsat.G11896 vs. ExPASy Swiss-Prot
Match: Q84JZ6 (Multiple organellar RNA editing factor 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF3 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-10
Identity = 39/75 (52.00%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 29  FSAASLPSLLYSPLI-----SRHSAAP---SVRNFSTRSTSSSIKDPNPNWSNRPLMETI 88
           F   S  S    PLI     SR S  P   S R  ++ S  S + DP+PNWSNRP  ETI
Sbjct: 28  FPTLSSRSRFAMPLIEKVSSSRTSLGPCYISTRPKTSGSGYSPLNDPSPNWSNRPPKETI 87

Query: 89  LLDGCDFEHWLVVME 96
           LLDGCD+EHWL+VME
Sbjct: 88  LLDGCDYEHWLIVME 102

[Close]

BLAST of Cucsat.G11896 vs. ExPASy Swiss-Prot
Match: Q38732 (DAG protein, chloroplastic OS=Antirrhinum majus OX=4151 GN=DAG PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.0e-04
Identity = 30/74 (40.54%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 22 LLTPLPPFSAASLPSLLYSPLISRHSAAPSVRNFSTRSTSSSIKDPNPNWSNRPLMETIL 81
          LL+ L   S + LP     P+ SR +A P+VR  +    SS   + N N       ETI+
Sbjct: 23 LLSILSTSSLSFLPCTRPHPIKSRSAAYPTVRALTDGEYSSRRNNNNNNSGEE--RETIM 82

Query: 82 LDGCDFEHWLVVME 96
          L GCD+ HWL+VME
Sbjct: 83 LPGCDYNHWLIVME 94

[Close]

BLAST of Cucsat.G11896 vs. NCBI nr
Match: XP_008451724.1 (PREDICTED: multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Cucumis melo] >TYK16244.1 multiple organellar RNA editing factor 8 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 1.38e-20
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 46  HSAAPSVRNFSTRSTSSSIKDPNPNWSNRPLMETILLDGCDFEHWLVVME 95
           HSAAPSVR+FSTR+TSSS+ DPNPNWSNRP  ETILLDGCDFEHWLVVME
Sbjct: 60  HSAAPSVRDFSTRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVME 109

[Close]

BLAST of Cucsat.G11896 vs. NCBI nr
Match: KAA0059032.1 (multiple organellar RNA editing factor 8 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 1.38e-20
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 46  HSAAPSVRNFSTRSTSSSIKDPNPNWSNRPLMETILLDGCDFEHWLVVME 95
           HSAAPSVR+FSTR+TSSS+ DPNPNWSNRP  ETILLDGCDFEHWLVVME
Sbjct: 60  HSAAPSVRDFSTRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVME 109

[Close]

BLAST of Cucsat.G11896 vs. NCBI nr
Match: XP_031740169.1 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Cucumis sativus] >KAE8649259.1 hypothetical protein Csa_015191 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 2.71e-20
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 16  SPPSPSLLTPLPPFSAASLPSLLYSPLISRHSAAPSVRNFSTRSTSSSIKDPNPNWSNRP 75
           SP S SL+  L P +A      + +     HSAAPS+R+FSTR+TSSS+ DPNPNWSNRP
Sbjct: 36  SPSSSSLIRRLRPLAA------ILAADFRCHSAAPSLRDFSTRATSSSLNDPNPNWSNRP 95

Query: 76  LMETILLDGCDFEHWLVVME 95
             ETILLDGCDFEHWLVVME
Sbjct: 96  PKETILLDGCDFEHWLVVME 109

[Close]

BLAST of Cucsat.G11896 vs. NCBI nr
Match: MBA0675999.1 (hypothetical protein [Gossypium aridum])

HSP 1 Score: 89.7 bits (221), Expect = 3.01e-20
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 11  FSLHRSPPSPSLLTPLPPFSAASLPSLLYSPLIS--RHSAAPSVRNFSTRSTSSSIKDPN 70
           FS   +  + +L+TP PP S + L  L   P  S  R S +P+V++FSTR+  SS+ DPN
Sbjct: 31  FSSSAASSTKTLITPSPPPSVSFLRRLRAPPYYSLLRDSLSPAVKSFSTRAARSSLNDPN 90

Query: 71  PNWSNRPLMETILLDGCDFEHWLVVME 95
           PN+SNRP  ETILLDGCDFEHWLVVME
Sbjct: 91  PNYSNRPPKETILLDGCDFEHWLVVME 117

[Close]

BLAST of Cucsat.G11896 vs. NCBI nr
Match: XP_018731036.2 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Eucalyptus grandis])

HSP 1 Score: 91.7 bits (226), Expect = 1.10e-19
Identity = 52/84 (61.90%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 12  SLHRSPPSPSLLTPLPPFSAASLPSLLYSPLISRHSAAPSVRNFSTRSTSSSIKDPNPNW 71
           S  RSP S  L   L P S+AS          +  +AAPS R+F TRSTSSS+ DPNPNW
Sbjct: 37  SAPRSPLSSLLRHRLRPLSSAS----------AAVAAAPSARSFRTRSTSSSLNDPNPNW 96

Query: 72  SNRPLMETILLDGCDFEHWLVVME 95
           SNRP  ETILLDGCDFEHWLVVME
Sbjct: 97  SNRPSKETILLDGCDFEHWLVVME 110

[Close]

BLAST of Cucsat.G11896 vs. ExPASy TrEMBL
Match: A0A5A7UT11 (Multiple organellar RNA editing factor 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00540 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.66e-21
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 46  HSAAPSVRNFSTRSTSSSIKDPNPNWSNRPLMETILLDGCDFEHWLVVME 95
           HSAAPSVR+FSTR+TSSS+ DPNPNWSNRP  ETILLDGCDFEHWLVVME
Sbjct: 60  HSAAPSVRDFSTRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVME 109

[Close]

BLAST of Cucsat.G11896 vs. ExPASy TrEMBL
Match: A0A5D3CZ72 (Multiple organellar RNA editing factor 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00090 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.66e-21
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 46  HSAAPSVRNFSTRSTSSSIKDPNPNWSNRPLMETILLDGCDFEHWLVVME 95
           HSAAPSVR+FSTR+TSSS+ DPNPNWSNRP  ETILLDGCDFEHWLVVME
Sbjct: 60  HSAAPSVRDFSTRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVME 109

[Close]

BLAST of Cucsat.G11896 vs. ExPASy TrEMBL
Match: A0A1S3BTA4 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103492931 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.66e-21
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 46  HSAAPSVRNFSTRSTSSSIKDPNPNWSNRPLMETILLDGCDFEHWLVVME 95
           HSAAPSVR+FSTR+TSSS+ DPNPNWSNRP  ETILLDGCDFEHWLVVME
Sbjct: 60  HSAAPSVRDFSTRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVME 109

[Close]

BLAST of Cucsat.G11896 vs. ExPASy TrEMBL
Match: A0A0A0KXM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083630 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.33e-20
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 16  SPPSPSLLTPLPPFSAASLPSLLYSPLISRHSAAPSVRNFSTRSTSSSIKDPNPNWSNRP 75
           SP S SL+  L P +A      + +     HSAAPS+R+FSTR+TSSS+ DPNPNWSNRP
Sbjct: 36  SPSSSSLIRRLRPLAA------ILAADFRCHSAAPSLRDFSTRATSSSLNDPNPNWSNRP 95

Query: 76  LMETILLDGCDFEHWLVVME 95
             ETILLDGCDFEHWLVVME
Sbjct: 96  PKETILLDGCDFEHWLVVME 109

[Close]

BLAST of Cucsat.G11896 vs. ExPASy TrEMBL
Match: A0A7J8WN37 (Uncharacterized protein (Fragment) OS=Gossypium aridum OX=34290 GN=Goari_017509 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.46e-20
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 11  FSLHRSPPSPSLLTPLPPFSAASLPSLLYSPLIS--RHSAAPSVRNFSTRSTSSSIKDPN 70
           FS   +  + +L+TP PP S + L  L   P  S  R S +P+V++FSTR+  SS+ DPN
Sbjct: 31  FSSSAASSTKTLITPSPPPSVSFLRRLRAPPYYSLLRDSLSPAVKSFSTRAARSSLNDPN 90

Query: 71  PNWSNRPLMETILLDGCDFEHWLVVME 95
           PN+SNRP  ETILLDGCDFEHWLVVME
Sbjct: 91  PNYSNRPPKETILLDGCDFEHWLVVME 117

The following BLAST results are available for this feature:

BLAST of Cucsat.G11896 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LKA5	8.3e-14	56.41	Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabido...	[more]
Q84JZ6	3.3e-10	52.00	Multiple organellar RNA editing factor 3, mitochondrial OS=Arabidopsis thaliana ...	[more]
Q38732	6.0e-04	40.54	DAG protein, chloroplastic OS=Antirrhinum majus OX=4151 GN=DAG PE=2 SV=1	[more]

BLAST of Cucsat.G11896 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451724.1	1.38e-20	88.00	PREDICTED: multiple organellar RNA editing factor 8, chloroplastic/mitochondrial...	[more]
KAA0059032.1	1.38e-20	88.00	multiple organellar RNA editing factor 8 [Cucumis melo var. makuwa]	[more]
XP_031740169.1	2.71e-20	63.75	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Cucumis s...	[more]
MBA0675999.1	3.01e-20	56.32	hypothetical protein [Gossypium aridum]	[more]
XP_018731036.2	1.10e-19	61.90	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Euca...	[more]

BLAST of Cucsat.G11896 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UT11	6.66e-21	88.00	Multiple organellar RNA editing factor 8 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CZ72	6.66e-21	88.00	Multiple organellar RNA editing factor 8 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BTA4	6.66e-21	88.00	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Cucumis...	[more]
A0A0A0KXM3	1.33e-20	63.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083630 PE=4 SV=1	[more]
A0A7J8WN37	1.46e-20	56.32	Uncharacterized protein (Fragment) OS=Gossypium aridum OX=34290 GN=Goari_017509 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31346:SF25	MULTIPLE ORGANELLAR RNA EDITING FACTOR 8, CHLOROPLASTIC/MITOCHONDRIAL-LIKE	coord: 40..111
IPR039206	MORF/ORRM1/DAG-like	PANTHER	PTHR31346	MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED	coord: 40..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G11896.T1	Cucsat.G11896.T1	mRNA
Cucsat.G11896.T2	Cucsat.G11896.T2	mRNA
Cucsat.G11896.T3	Cucsat.G11896.T3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016554	cytidine to uridine editing
biological_process	GO:0080156	mitochondrial mRNA modification
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005739	mitochondrion