Cucsat.G11857 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G11857
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	30S ribosomal protein S11
Location	ctg1820: 1476228 .. 1478358 (-)
RNA-Seq Expression	Cucsat.G11857
Synteny	Cucsat.G11857

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCTTTCTTCAAAATTCAAAAGAATTATGTTTCAAAATTGGAATGTTGGTGTAGAGGTGAATTTCCCTTTTTATAATCTAACATAAATTAATTTAATTAAAATTACACAAAGTTGGATCGATGGTTAGATTAATTTTTATATATCAATTACACATTTGAAAGAAGTGGGAGAGTCCTCGTAATCGTATGTGATGTCTCATCCACCAAGACCGGAAAATACTTTAGGGTTTTCTTTTCGCCACTTCTTATTCCCATAACCACCGCCAGCGCCCGTCCGACCACGATGCCGAAACTCTCCCTCTCTCACCTCTCCTCTCTCTTCCGCTCATCCTCTCTCTCTCCTGCACCTTCTTTTTCTCCTTCTCGCCTCTCCATTTCACCGTTCATTGGCTCAGATGCGCCTTCACGCATGTCCTCCCTCCACCGATCAGATCTCACTGGATCCCTTCAACCACACAACCAGTTCTCAGGTGAATACTGCTCTTTGTCTTCTATCTAATTCGGGAAATGACAGTTGGAATTTATTGGTTGATTTCTTTAGTGAGTGATGAGTGTTCTGCGTATTGCAGGCTGTCTCCGTGATTCTGCTAATGTGGGCCGAGAGATTGTAGGACGTGGTTGGAAATCCATGGGAGTTCAGGGTCCTAGTTCGGGTTTGGCGCGTCCAAGTGAAAGTGTCTCCATTCCTTATTCTATTAGCTCTAGATGTTATGGAGAGTATGACAACCGGCCTAATCCTCCAGATACAGGAAGGAATCTTAAGCCTATGAACTTCGTGAGGGGAATTTTAGAGGAAGAGGAAAGGGGTTTTTTTGGTACTCCTCAGTTCCTTAGGCCATCCAATATGGAACACAATGCTGATATCGTTCATATAAAGCTGATGCGTAACAATTCATTTGTCACTGTTACGGATAACAAGGGAAATACAAAGCTCAAGGCCTCTGCTGGTCGTCTTGAAGGAGGGGCTAAACTGTCTCGTTATTCTGCTGATTCAATTGCAGAGTATGTTGGTCGTGAATCTAGAAAATTGGGGCTAAAATCAGTTGTGATGAGGGTTAAAGGCTTTACTTTTTTTAAGAAGAAAAAGCAAGCCATCTTGAGTTGGAGAGATGGATTTACTGATTCTAGAACTGACCAAAATCCGATTGTTTACGTTGAAGATACGACGAGACGTGCACACAATGGTTGCCGACTCCCAAAGAAACGCCGTGTCTAGATTTACCGTGTTGTCTTCATTTTCTTATATCTTTGCTGGCTCAGTTTCGAATTTTTGTAGCTAGCTTGCCTTCAAGTTCTTACTTGCTTGTTACAATAATGATGACAATAGAATGGTTTTCTATATACATCAGTGTAAAACATTTGCTTTTTAGTTATTACCATATGGACTTCATTTCAATAGAACGATATCAAGAGTTTAAGTGGCCCCCAGCTTCCAATCTTTTTACTTTTAAGTTCATTTTCTTCTGTTATTATTTTGTGGATTACTCATTTCTTGGACATTGCATCTGTGCTTCTCAGTTCTCACTGTGACCCCCCGCGCTTGGAATTCTTGTTTTACTGTTTGCGCAAAAAATTTTGGTTTCTAGTTATGGCTCAGATGATGACAGTCGAAGGTGGCTTTGTCTGGTTTAACTACAGAACAGAGAGAGTTATCACAATAAATTGACCAATGTTTTTGTTTGGGAGGTATTTATGTAGATTTGCAGGCTTTTTGATCGTTGATGCTGGATTTGTACTCTGAATCTGGACCCTCAGCAGAGATGGCCACAACATGCGCACAGCATGGAGATTCATAATTGTTTACTAACAATGACATGGAATTATACAAAACGTTCTAGAATCAGAAAGCCTTGACGCATAATTGGTAAAGGGTGTTCCTCCATACAGTTCTGAATAGAAGAATGGAGCAATAGAGCTACTGAGGGTGATATATTGATGTGCACGTGATGGCTGATTTGAAGTTGCTGCGCTCATGTTTTCTTGCTAAATCTTTTCTGAGGATGTAATTTGTCGCTGTCTCAGCTTCGGCAGTACATCCTTTTTAGTGCTGGAGGTACTTGCATTGCATTGCATCAACTGATATGAAAATGAATATTGGTGATAGGGATGAACCCAATGCACACGAATTTT

Coding sequence (CDS)

ATGCCGAAACTCTCCCTCTCTCACCTCTCCTCTCTCTTCCGCTCATCCTCTCTCTCTCCTGCACCTTCTTTTTCTCCTTCTCGCCTCTCCATTTCACCGTTCATTGGCTCAGATGCGCCTTCACGCATGTCCTCCCTCCACCGATCAGATCTCACTGGATCCCTTCAACCACACAACCAGTTCTCAGGCTGTCTCCGTGATTCTGCTAATGTGGGCCGAGAGATTGTAGGACGTGGTTGGAAATCCATGGGAGTTCAGGGTCCTAGTTCGGGTTTGGCGCGTCCAAGTGAAAGTGTCTCCATTCCTTATTCTATTAGCTCTAGATGTTATGGAGAGTATGACAACCGGCCTAATCCTCCAGATACAGGAAGGAATCTTAAGCCTATGAACTTCGTGAGGGGAATTTTAGAGGAAGAGGAAAGGGGTTTTTTTGGTACTCCTCAGTTCCTTAGGCCATCCAATATGGAACACAATGCTGATATCGTTCATATAAAGCTGATGCGTAACAATTCATTTGTCACTGTTACGGATAACAAGGGAAATACAAAGCTCAAGGCCTCTGCTGGTCGTCTTGAAGGAGGGGCTAAACTGTCTCGTTATTCTGCTGATTCAATTGCAGAGTATGTTGGTCGTGAATCTAGAAAATTGGGGCTAAAATCAGTTGTGATGAGGGTTAAAGGCTTTACTTTTTTTAAGAAGAAAAAGCAAGCCATCTTGAGTTGGAGAGATGGATTTACTGATTCTAGAACTGACCAAAATCCGATTGTTTACGTTGAAGATACGACGAGACGTGCACACAATGGTTGCCGACTCCCAAAGAAACGCCGTGTCTAG

Protein sequence

MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQFSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSESVSIPYSISSRCYGEYDNRPNPPDTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKGNTKLKASAGRLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV

Homology

[Close]

BLAST of Cucsat.G11857 vs. ExPASy Swiss-Prot
Match: Q8VZT8 (Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD3 PE=1 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.7e-47
Identity = 99/191 (51.83%), Postives = 137/191 (71.73%), Query Frame = 0


Query: 90  SGLARPSESVSIPYSISSRCYGEYDNRPNPPDTGRNLKPMNFVRGILEEEERGFFGTPQF 149
           SG + PS S    ++ SS    E         +G     ++FVR ++E+E R   G    
Sbjct: 130 SGFSAPSLSSYENFTQSSSLLKENSR------SGGKSSDLDFVREVIEDEGRRTAGIFSH 189

Query: 150 LRPSNMEHNADIVHIKLMRNNSFVTVTDNKGNTKLKASAGR---LEGGAKLSRYSADSIA 209
            +  N+E NADI+HIK++RNN+FVTVTD+KGN K KA++G    L+GG K++ Y+AD+ A
Sbjct: 190 FQRPNLETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATA 249

Query: 210 EYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAH 269
           E +GR ++ +GLKSVV++V GFT F KKK+AI+++RDGFT+SR+DQNPIVY+EDTTR+AH
Sbjct: 250 ENIGRRAKAMGLKSVVVKVNGFTHFGKKKKAIIAFRDGFTNSRSDQNPIVYIEDTTRKAH 309

Query: 270 NGCRLPKKRRV 278
           NGCRLP+KRRV
Sbjct: 310 NGCRLPRKRRV 314

[Close]

BLAST of Cucsat.G11857 vs. ExPASy Swiss-Prot
Match: P46746 (Ribosomal protein S11, mitochondrial OS=Prototheca wickerhamii OX=3111 GN=RPS11 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.5e-10
Identity = 40/125 (32.00%), Postives = 68/125 (54.40%), Query Frame = 0


Query: 155 MEHNADIVHIKLMRNNSFVTVTDNKGNTKLKASAGRL--EGGAKLSRYSADSIAEYVGRE 214
           +E  + IVHI+   NN+ +T+TD +GNT+   SAG L  +   K + Y++ + AE +  +
Sbjct: 13  IEKKSGIVHIQSTTNNTLITLTDLEGNTQFFVSAGTLGFKNSRKSTVYASGAAAEALASK 72

Query: 215 SRKLGLKSVVMRVKGFTFFKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLP 274
           +   G +++++++KG  + KK               +     I  +++ T  AHNGCR P
Sbjct: 73  AFNEGYRTIIVKIKGLGYGKK---------SAIRGLQKSNLVIKQIQEVTPIAHNGCRPP 128

Query: 275 KKRRV 278
           KKRRV
Sbjct: 133 KKRRV 128

[Close]

BLAST of Cucsat.G11857 vs. ExPASy Swiss-Prot
Match: A7FZ46 (30S ribosomal protein S11 OS=Clostridium botulinum (strain ATCC 19397 / Type A) OX=441770 GN=rpsK PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-09
Identity = 48/126 (38.10%), Postives = 67/126 (53.17%), Query Frame = 0


Query: 154 NMEHNADIVHIKLMRNNSFVTVTDNKGNTKLKASAGRL--EGGAKLSRYSADSIAEYVGR 213
           N+EH     HIK   NNS VT+TD+ GNT   ASAG L   G  K + ++A   AE   +
Sbjct: 18  NVEHGC--AHIKSTFNNSIVTITDSVGNTLSWASAGGLGFRGSRKSTPFAAQMAAETAAK 77

Query: 214 ESRKLGLKSVVMRVKGFTFFKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRL 273
            + + GLKS+ + VKG      ++ AI S +    +       +  ++D T   HNGCR 
Sbjct: 78  AAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE-------VTLIKDVTPIPHNGCRP 132

Query: 274 PKKRRV 278
           PK+RRV
Sbjct: 138 PKRRRV 132

[Close]

BLAST of Cucsat.G11857 vs. ExPASy Swiss-Prot
Match: C3KVM4 (30S ribosomal protein S11 OS=Clostridium botulinum (strain 657 / Type Ba4) OX=515621 GN=rpsK PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-09
Identity = 48/126 (38.10%), Postives = 67/126 (53.17%), Query Frame = 0


Query: 154 NMEHNADIVHIKLMRNNSFVTVTDNKGNTKLKASAGRL--EGGAKLSRYSADSIAEYVGR 213
           N+EH     HIK   NNS VT+TD+ GNT   ASAG L   G  K + ++A   AE   +
Sbjct: 18  NVEHGC--AHIKSTFNNSIVTITDSVGNTLSWASAGGLGFRGSRKSTPFAAQMAAETAAK 77

Query: 214 ESRKLGLKSVVMRVKGFTFFKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRL 273
            + + GLKS+ + VKG      ++ AI S +    +       +  ++D T   HNGCR 
Sbjct: 78  AAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE-------VTLIKDVTPIPHNGCRP 132

Query: 274 PKKRRV 278
           PK+RRV
Sbjct: 138 PKRRRV 132

[Close]

BLAST of Cucsat.G11857 vs. ExPASy Swiss-Prot
Match: A5I7H9 (30S ribosomal protein S11 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) OX=441771 GN=rpsK PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-09
Identity = 48/126 (38.10%), Postives = 67/126 (53.17%), Query Frame = 0


Query: 154 NMEHNADIVHIKLMRNNSFVTVTDNKGNTKLKASAGRL--EGGAKLSRYSADSIAEYVGR 213
           N+EH     HIK   NNS VT+TD+ GNT   ASAG L   G  K + ++A   AE   +
Sbjct: 18  NVEHGC--AHIKSTFNNSIVTITDSVGNTLSWASAGGLGFRGSRKSTPFAAQMAAETAAK 77

Query: 214 ESRKLGLKSVVMRVKGFTFFKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRL 273
            + + GLKS+ + VKG      ++ AI S +    +       +  ++D T   HNGCR 
Sbjct: 78  AAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE-------VTLIKDVTPIPHNGCRP 132

Query: 274 PKKRRV 278
           PK+RRV
Sbjct: 138 PKRRRV 132

[Close]

BLAST of Cucsat.G11857 vs. NCBI nr
Match: XP_004137167.1 (probable ribosomal protein S11, mitochondrial [Cucumis sativus])

HSP 1 Score: 546 bits (1408), Expect = 5.64e-196
Identity = 276/277 (99.64%), Postives = 276/277 (99.64%), Query Frame = 0


Query: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ 60
           MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ
Sbjct: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ 60

Query: 61  FSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSESVSIPYSISSRCYGEYDNRPNPP 120
           FSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSE VSIPYSISSRCYGEYDNRPNPP
Sbjct: 61  FSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSEGVSIPYSISSRCYGEYDNRPNPP 120

Query: 121 DTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG 180
           DTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG
Sbjct: 121 DTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG 180

Query: 181 NTKLKASAGRLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILS 240
           NTKLKASAGRLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILS
Sbjct: 181 NTKLKASAGRLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILS 240

Query: 241 WRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 277
           WRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV
Sbjct: 241 WRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 277

[Close]

BLAST of Cucsat.G11857 vs. NCBI nr
Match: KAE8649303.1 (hypothetical protein Csa_014520 [Cucumis sativus])

HSP 1 Score: 479 bits (1234), Expect = 7.50e-170
Identity = 252/277 (90.97%), Postives = 252/277 (90.97%), Query Frame = 0


Query: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ 60
           MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ
Sbjct: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ 60

Query: 61  FSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSESVSIPYSISSRCYGEYDNRPNPP 120
           FSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSE                       
Sbjct: 61  FSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSE----------------------- 120

Query: 121 DTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG 180
             GRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG
Sbjct: 121 --GRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG 180

Query: 181 NTKLKASAGRLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILS 240
           NTKLKASAGRLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILS
Sbjct: 181 NTKLKASAGRLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILS 240

Query: 241 WRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 277
           WRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV
Sbjct: 241 WRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 252

[Close]

BLAST of Cucsat.G11857 vs. NCBI nr
Match: XP_008455641.1 (PREDICTED: probable ribosomal protein S11, mitochondrial [Cucumis melo] >KAA0045282.1 putative ribosomal protein S11 [Cucumis melo var. makuwa])

HSP 1 Score: 466 bits (1198), Expect = 5.30e-164
Identity = 242/281 (86.12%), Postives = 255/281 (90.75%), Query Frame = 0


Query: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ 60
           MPKLSLSHLS LFRSSSLS +PSFSPSRLSISPFIGSDAPSR SS   S LTGSLQPHN 
Sbjct: 1   MPKLSLSHLSPLFRSSSLSRSPSFSPSRLSISPFIGSDAPSRFSSPLPSHLTGSLQPHNH 60

Query: 61  FSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSESVSIPYSISSRCYGEYDNRPNPP 120
           FSG      +VGREIVGRGWK+MGVQGPS GLAR +ESVS+PYSISSRCYGEYDNRPNPP
Sbjct: 61  FSG------SVGREIVGRGWKAMGVQGPSWGLARSTESVSVPYSISSRCYGEYDNRPNPP 120

Query: 121 DTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG 180
           DTGRNLK +NFVRGILEE+E+ F   PQ+LRP+NMEHNADIVHIKLMRNN+FVTVTDNKG
Sbjct: 121 DTGRNLKTLNFVRGILEEDEKVFSDVPQYLRPTNMEHNADIVHIKLMRNNAFVTVTDNKG 180

Query: 181 NTKLKASAGRLE----GGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQ 240
           NTKLKASAGRLE    GGAKLSRYS DSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQ
Sbjct: 181 NTKLKASAGRLEELKGGGAKLSRYSGDSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQ 240

Query: 241 AILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 277
           AILSWRDGFTDSR+DQNPIVY+EDTTRRAHNGCRLPKKRRV
Sbjct: 241 AILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKKRRV 275

[Close]

BLAST of Cucsat.G11857 vs. NCBI nr
Match: TYK31671.1 (putative ribosomal protein S11 [Cucumis melo var. makuwa])

HSP 1 Score: 410 bits (1055), Expect = 4.06e-142
Identity = 209/246 (84.96%), Postives = 221/246 (89.84%), Query Frame = 0


Query: 36  GSDAPSRMSSLHRSDLTGSLQPHNQFSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARP 95
           G DAPSR SS   S LTGSLQPHN FSG      +VGREIVGRGWK+MGVQGPS GLAR 
Sbjct: 43  GVDAPSRFSSPLPSHLTGSLQPHNHFSG------SVGREIVGRGWKAMGVQGPSWGLARS 102

Query: 96  SESVSIPYSISSRCYGEYDNRPNPPDTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNM 155
           +ESVS+PYSISSRCYGEYDNRPNPPDTGRNLK +NFVRGILEE+E+ F   PQ+LRP+NM
Sbjct: 103 TESVSVPYSISSRCYGEYDNRPNPPDTGRNLKTLNFVRGILEEDEKVFSDVPQYLRPTNM 162

Query: 156 EHNADIVHIKLMRNNSFVTVTDNKGNTKLKASAGRLE----GGAKLSRYSADSIAEYVGR 215
           EHNADIVHIKLMRNN+FVTVTDNKGNTKLKASAGRLE    GGAKLSRYS DSIAEYVGR
Sbjct: 163 EHNADIVHIKLMRNNAFVTVTDNKGNTKLKASAGRLEELKGGGAKLSRYSGDSIAEYVGR 222

Query: 216 ESRKLGLKSVVMRVKGFTFFKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRL 275
           ESRKLGLKSVVMRVKGFTFFKKKKQAILSWRDGFTDSR+DQNPIVY+EDTTRRAHNGCRL
Sbjct: 223 ESRKLGLKSVVMRVKGFTFFKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRL 282

Query: 276 PKKRRV 277
           PKKRRV
Sbjct: 283 PKKRRV 282

[Close]

BLAST of Cucsat.G11857 vs. NCBI nr
Match: XP_038903066.1 (probable ribosomal protein S11, mitochondrial [Benincasa hispida])

HSP 1 Score: 406 bits (1044), Expect = 1.99e-140
Identity = 214/284 (75.35%), Postives = 238/284 (83.80%), Query Frame = 0


Query: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ 60
           MPKLSLSHL SLFRSSSL   PSFSPSRLSISPFIGSD+ S MSS+HRSDLTGS++  NQ
Sbjct: 1   MPKLSLSHLYSLFRSSSLRHGPSFSPSRLSISPFIGSDSRSSMSSIHRSDLTGSIRLDNQ 60

Query: 61  FSGCLR----DSANVGREIVGRGWKSMGVQGPSSGLARPSESVSIPYSISSRCYGEYDNR 120
            SGCL     DSANVGREIVGRGWKS G QG    L R SE VS+ +S S RCYG+YDNR
Sbjct: 61  LSGCLDLSQGDSANVGREIVGRGWKSTGAQGSCWSLGRSSECVSVSHSTSYRCYGQYDNR 120

Query: 121 PNPPDTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVT 180
           PN  DTGRNL  M+FVR  LEE  R F G+ +F R  NMEHNADIVH+KL+RNN+F+TVT
Sbjct: 121 PNA-DTGRNLNSMSFVRDTLEEGGRYFTGSSRFFRQPNMEHNADIVHVKLLRNNTFITVT 180

Query: 181 DNKGNTKLKASAGRLE---GGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKK 240
           DNKGNTKLKASAGRLE   GG KLSRY+A+++AEYVGRESRKLGLKSVVMRVKGFT FK+
Sbjct: 181 DNKGNTKLKASAGRLEELKGGPKLSRYAAEAVAEYVGRESRKLGLKSVVMRVKGFTIFKR 240

Query: 241 KKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 277
           K+QAI+SWR GFTDSR+DQNPIVY+EDTTRRAHNGCRLPK+RRV
Sbjct: 241 KRQAIISWRAGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 283

[Close]

BLAST of Cucsat.G11857 vs. ExPASy TrEMBL
Match: A0A0A0KVQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G107470 PE=3 SV=1)

HSP 1 Score: 546 bits (1408), Expect = 2.73e-196
Identity = 276/277 (99.64%), Postives = 276/277 (99.64%), Query Frame = 0


Query: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ 60
           MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ
Sbjct: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ 60

Query: 61  FSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSESVSIPYSISSRCYGEYDNRPNPP 120
           FSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSE VSIPYSISSRCYGEYDNRPNPP
Sbjct: 61  FSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSEGVSIPYSISSRCYGEYDNRPNPP 120

Query: 121 DTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG 180
           DTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG
Sbjct: 121 DTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG 180

Query: 181 NTKLKASAGRLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILS 240
           NTKLKASAGRLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILS
Sbjct: 181 NTKLKASAGRLEGGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQAILS 240

Query: 241 WRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 277
           WRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV
Sbjct: 241 WRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 277

[Close]

BLAST of Cucsat.G11857 vs. ExPASy TrEMBL
Match: A0A5A7TPI6 (Putative ribosomal protein S11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00350 PE=3 SV=1)

HSP 1 Score: 466 bits (1198), Expect = 2.56e-164
Identity = 242/281 (86.12%), Postives = 255/281 (90.75%), Query Frame = 0


Query: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ 60
           MPKLSLSHLS LFRSSSLS +PSFSPSRLSISPFIGSDAPSR SS   S LTGSLQPHN 
Sbjct: 1   MPKLSLSHLSPLFRSSSLSRSPSFSPSRLSISPFIGSDAPSRFSSPLPSHLTGSLQPHNH 60

Query: 61  FSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSESVSIPYSISSRCYGEYDNRPNPP 120
           FSG      +VGREIVGRGWK+MGVQGPS GLAR +ESVS+PYSISSRCYGEYDNRPNPP
Sbjct: 61  FSG------SVGREIVGRGWKAMGVQGPSWGLARSTESVSVPYSISSRCYGEYDNRPNPP 120

Query: 121 DTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG 180
           DTGRNLK +NFVRGILEE+E+ F   PQ+LRP+NMEHNADIVHIKLMRNN+FVTVTDNKG
Sbjct: 121 DTGRNLKTLNFVRGILEEDEKVFSDVPQYLRPTNMEHNADIVHIKLMRNNAFVTVTDNKG 180

Query: 181 NTKLKASAGRLE----GGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQ 240
           NTKLKASAGRLE    GGAKLSRYS DSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQ
Sbjct: 181 NTKLKASAGRLEELKGGGAKLSRYSGDSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQ 240

Query: 241 AILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 277
           AILSWRDGFTDSR+DQNPIVY+EDTTRRAHNGCRLPKKRRV
Sbjct: 241 AILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKKRRV 275

[Close]

BLAST of Cucsat.G11857 vs. ExPASy TrEMBL
Match: A0A1S3C2M0 (probable ribosomal protein S11, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495763 PE=3 SV=1)

HSP 1 Score: 466 bits (1198), Expect = 2.56e-164
Identity = 242/281 (86.12%), Postives = 255/281 (90.75%), Query Frame = 0


Query: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRSDLTGSLQPHNQ 60
           MPKLSLSHLS LFRSSSLS +PSFSPSRLSISPFIGSDAPSR SS   S LTGSLQPHN 
Sbjct: 1   MPKLSLSHLSPLFRSSSLSRSPSFSPSRLSISPFIGSDAPSRFSSPLPSHLTGSLQPHNH 60

Query: 61  FSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARPSESVSIPYSISSRCYGEYDNRPNPP 120
           FSG      +VGREIVGRGWK+MGVQGPS GLAR +ESVS+PYSISSRCYGEYDNRPNPP
Sbjct: 61  FSG------SVGREIVGRGWKAMGVQGPSWGLARSTESVSVPYSISSRCYGEYDNRPNPP 120

Query: 121 DTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFVTVTDNKG 180
           DTGRNLK +NFVRGILEE+E+ F   PQ+LRP+NMEHNADIVHIKLMRNN+FVTVTDNKG
Sbjct: 121 DTGRNLKTLNFVRGILEEDEKVFSDVPQYLRPTNMEHNADIVHIKLMRNNAFVTVTDNKG 180

Query: 181 NTKLKASAGRLE----GGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQ 240
           NTKLKASAGRLE    GGAKLSRYS DSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQ
Sbjct: 181 NTKLKASAGRLEELKGGGAKLSRYSGDSIAEYVGRESRKLGLKSVVMRVKGFTFFKKKKQ 240

Query: 241 AILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 277
           AILSWRDGFTDSR+DQNPIVY+EDTTRRAHNGCRLPKKRRV
Sbjct: 241 AILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKKRRV 275

[Close]

BLAST of Cucsat.G11857 vs. ExPASy TrEMBL
Match: A0A5D3E7T5 (Putative ribosomal protein S11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold398G00260 PE=3 SV=1)

HSP 1 Score: 410 bits (1055), Expect = 1.97e-142
Identity = 209/246 (84.96%), Postives = 221/246 (89.84%), Query Frame = 0


Query: 36  GSDAPSRMSSLHRSDLTGSLQPHNQFSGCLRDSANVGREIVGRGWKSMGVQGPSSGLARP 95
           G DAPSR SS   S LTGSLQPHN FSG      +VGREIVGRGWK+MGVQGPS GLAR 
Sbjct: 43  GVDAPSRFSSPLPSHLTGSLQPHNHFSG------SVGREIVGRGWKAMGVQGPSWGLARS 102

Query: 96  SESVSIPYSISSRCYGEYDNRPNPPDTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNM 155
           +ESVS+PYSISSRCYGEYDNRPNPPDTGRNLK +NFVRGILEE+E+ F   PQ+LRP+NM
Sbjct: 103 TESVSVPYSISSRCYGEYDNRPNPPDTGRNLKTLNFVRGILEEDEKVFSDVPQYLRPTNM 162

Query: 156 EHNADIVHIKLMRNNSFVTVTDNKGNTKLKASAGRLE----GGAKLSRYSADSIAEYVGR 215
           EHNADIVHIKLMRNN+FVTVTDNKGNTKLKASAGRLE    GGAKLSRYS DSIAEYVGR
Sbjct: 163 EHNADIVHIKLMRNNAFVTVTDNKGNTKLKASAGRLEELKGGGAKLSRYSGDSIAEYVGR 222

Query: 216 ESRKLGLKSVVMRVKGFTFFKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRL 275
           ESRKLGLKSVVMRVKGFTFFKKKKQAILSWRDGFTDSR+DQNPIVY+EDTTRRAHNGCRL
Sbjct: 223 ESRKLGLKSVVMRVKGFTFFKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRL 282

Query: 276 PKKRRV 277
           PKKRRV
Sbjct: 283 PKKRRV 282

[Close]

BLAST of Cucsat.G11857 vs. ExPASy TrEMBL
Match: A0A6J1KGF8 (probable ribosomal protein S11, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111493991 PE=3 SV=1)

HSP 1 Score: 397 bits (1020), Expect = 4.81e-137
Identity = 213/287 (74.22%), Postives = 235/287 (81.88%), Query Frame = 0


Query: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLHRS---DLTGSLQP 60
           M +L L HLSSLFRSSSLS   SFS SR+SISPF G+D  S M SLH S   DL+GS+Q 
Sbjct: 1   MRRLPLPHLSSLFRSSSLSHGSSFSSSRVSISPFFGTDGRSPMFSLHSSHGSDLSGSVQL 60

Query: 61  HNQFSGCLR----DSANVGREIVGRGWKSMGVQGPSSGLARPSESVSIPYSISSRCYGEY 120
             Q SGC+     DS NVGREIVGR WK++G QGP  GLAR SE+VS+PYS SSRCY  Y
Sbjct: 61  DRQDSGCVDLPRGDSVNVGREIVGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHY 120

Query: 121 DNRPNPPDTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFV 180
           D  PN  DTGRN K MNFVRGILEE+   F G+ QF RP NMEHNADIVH+KLMRNN+F+
Sbjct: 121 DGPPNA-DTGRNFKSMNFVRGILEEDGMNFMGSSQFPRPPNMEHNADIVHVKLMRNNTFI 180

Query: 181 TVTDNKGNTKLKASAGRLE---GGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTF 240
           TVTDNKGNTKLKASAGRLE   GG KLSRY+A++ AEYVGRESRKLGLKSVVMRVKGFT+
Sbjct: 181 TVTDNKGNTKLKASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLGLKSVVMRVKGFTY 240

Query: 241 FKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 277
           FKKKKQAILSWRDGFTDSR+DQNPIVY+EDTTRRAHNGCRLPK+RRV
Sbjct: 241 FKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 286

The following BLAST results are available for this feature:

BLAST of Cucsat.G11857 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZT8	1.7e-47	51.83	Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana OX=3702 GN...	[more]
P46746	6.5e-10	32.00	Ribosomal protein S11, mitochondrial OS=Prototheca wickerhamii OX=3111 GN=RPS11 ...	[more]
A7FZ46	1.9e-09	38.10	30S ribosomal protein S11 OS=Clostridium botulinum (strain ATCC 19397 / Type A) ...	[more]
C3KVM4	1.9e-09	38.10	30S ribosomal protein S11 OS=Clostridium botulinum (strain 657 / Type Ba4) OX=51...	[more]
A5I7H9	1.9e-09	38.10	30S ribosomal protein S11 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NC...	[more]

BLAST of Cucsat.G11857 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137167.1	5.64e-196	99.64	probable ribosomal protein S11, mitochondrial [Cucumis sativus]	[more]
KAE8649303.1	7.50e-170	90.97	hypothetical protein Csa_014520 [Cucumis sativus]	[more]
XP_008455641.1	5.30e-164	86.12	PREDICTED: probable ribosomal protein S11, mitochondrial [Cucumis melo] >KAA0045...	[more]
TYK31671.1	4.06e-142	84.96	putative ribosomal protein S11 [Cucumis melo var. makuwa]	[more]
XP_038903066.1	1.99e-140	75.35	probable ribosomal protein S11, mitochondrial [Benincasa hispida]	[more]

BLAST of Cucsat.G11857 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVQ8	2.73e-196	99.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G107470 PE=3 SV=1	[more]
A0A5A7TPI6	2.56e-164	86.12	Putative ribosomal protein S11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3C2M0	2.56e-164	86.12	probable ribosomal protein S11, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5D3E7T5	1.97e-142	84.96	Putative ribosomal protein S11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1KGF8	4.81e-137	74.22	probable ribosomal protein S11, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 150..277 e-value: 1.2E-29 score: 105.1
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 161..276 e-value: 3.1E-10 score: 40.4
IPR001971	Ribosomal protein S11	PANTHER	PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	coord: 89..277
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 127..277 score: 14.786148
None	No IPR available	PANTHER	PTHR11759:SF34	RIBOSOMAL PROTEIN S11, MITOCHONDRIAL-RELATED	coord: 89..277
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 159..277

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G11857.T1	Cucsat.G11857.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0005763	mitochondrial small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0048027	mRNA 5'-UTR binding
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome