Cucsat.G11813 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G11813
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	LINE-1 retrotransposable element ORF2 protein
Location	ctg1820: 1496633 .. 1498226 (+)
RNA-Seq Expression	Cucsat.G11813
Synteny	Cucsat.G11813

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGCTCCAAGGGTGAAATACAACCAACGAGAGGCATTTGACAAGGTGACCCATTATCTCCCTTTCTTTTTATACTTGATATGGACTACTTGAGCAGATTTCTTAGTCATCTTGAAGAAATGGGTAAGTTAAAGGGGGTCAGATTCAACGATGATCAAAATGTTACTCATTTGCTGTTTGCGAATGACATATTATTGTTTATCAAAGACCATGATGAATCGATTGATAATATGAGATTTGATATCCACCTCTTTGAACTTGTTTCAGGTCTAAATGTCAACATGAACAAGTCTATGATCTCCTTGATAAACGTTGACTCTCATAGAACAAATTGTGTGGCTACAAAATGGTGGCTTACATCTCAGTTCCTTCCAATCAACTACTTAGGTGTCCCATTGGGAGGTAAACCTCTCTCTAAAAATTTTCGGGCTGAAGTTTATGAAAAATCCACAGAAAAATCCACAGAAAAATAAAATAACTGGAAATATTCTTTATCTTTCTAAAGGTGGTAAAATCACTTTGATCAACCCCCCACTCTTGCTAGTCTTCCAACATATCAACTATCTGTTTTTAAGGCCCTTATAAATGTCTGTAAAAATATTGAAAAGGCTTGGAGGAATTTGCTTTGGAAGAATTCAATAGATAAAAATGATATTTATCTTATGAGGTGGTCAGTCATTACAACCTCCAAAGAAAAGGATGGCCTTGGCATAAATCGTGTTATAGATACAGTTTTTTTCCTTCTTTGCAAATGGCTTTGTGGATTCCACTATGAAAAAAGCCCTTTGTGGAAGTGCATCATCTTGGCTAAATATGATCAATCATTTGTTGGAGAAATTCCGATGAAGGGCAAATACTGCAGTCTCAAAGCTCCTTGGTTATCTATTATTAAGGGAGTGGATTGGTTCATTTCCCATATTCATTGGAAGATAAATGAAGGTGCTTCCCTTTCTTTCCGGAAGACATTATGGCATGAAAATAGCCCTCTACACCTATGCAGACCCAGACTTTCGCCCTCTCTACAAAGCAAAATGGTACTATAAAAGATCTTTGGAACCCTAACACCCTTGAATGGGACATTAATCTGATAAGAAATCTAAGGGATCAGGAATTGCAACAATGGGAAAAGTTGAGAAATACCTTGCCTGTCCCTGAACACAATCATGGCACTAATATCCCCATATGGAAGCTGAACTCAAATGGGATCTTCTCCATTGCCTCTGTTAAAAAAGCTTTGCAAGCAAATGGGCAGTGTATTGAAATATCGGACTCCTTTGTCTTTGTCATGGAAGACTAGCATTCCCAAGAAGTGCAAAATTTTCATTTGGTCCATTATTTATCTCCATATAAATACTGTCAACTGCCTCCAAAAAAAGACTCCCAAATTGGTGTGTTTTATGCAAAGAAGTTGATGAAGACATAAATCACCTATTCGTATTCTGTAACTTTGTACATAAAATCTGGAAGAGGATGAAAGAAAAATCTTTCCTCTTCAATTCGGTGGTTGTTACACTTTGGCTCATTTGGATGGAAAGAAAAAATAGGATTCTCAAGGAGAAGGAAAAACCACTCACTAAAATCTGGGAAGATATCA

Coding sequence (CDS)

ATGAGGTGGTCAGTCATTACAACCTCCAAAGAAAAGGATGGCCTTGGCATAAATCGTGTTATAGATACAGTTTTTTTCCTTCTTTGCAAATGGCTTTGTGGATTCCACTATGAAAAAAGCCCTTTGTGGAAGTGCATCATCTTGGCTAAATATGATCAATCATTTGTTGGAGAAATTCCGATGAAGGGCAAATACTGCAGTCTCAAAGCTCCTTGGTTATCTATTATTAAGGGAGTGGATTGGTTCATTTCCCATATTCATTGGAAGATAAATGAAGGTGCTTCCCTTTCTTTCCGGAAGACATTATGGCATGAAAATAGCCCTCTACACCTATGCAGACCCAGACTTTCGCCCTCTCTACAAAGCAAAATGGTACTATAA

Protein sequence

MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRKTLWHENSPLHLCRPRLSPSLQSKMVL

Homology

[Close]

BLAST of Cucsat.G11813 vs. NCBI nr
Match: KAA0065894.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK15123.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (319), Expect = 1.11e-32
Identity = 59/116 (50.86%), Postives = 72/116 (62.07%), Query Frame = 0


Query: 1   MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIP 60
           +RWS++TT K K GLGI  V DT   LLCKWL  F  EK  LW  +I  KY    +G+IP
Sbjct: 181 VRWSIVTTPKCKRGLGITNVKDTNIALLCKWLWRFQEEKDSLWVKLISVKYKGHHIGDIP 240

Query: 61  MKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRKTLWHENSPLHLCRPRL 116
            K KY ++K PW  IIKG+ WF +H  WKINEG +LSF  + W  + PL    PRL
Sbjct: 241 TKRKYSNMKTPWRQIIKGIGWFENHWRWKINEGKNLSFWLSNWTASGPLSSRYPRL 296

[Close]

BLAST of Cucsat.G11813 vs. NCBI nr
Match: TYK05764.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (325), Expect = 1.12e-32
Identity = 59/116 (50.86%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 1   MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIP 60
           +RWS++T+ K K GLGINR+ DT F LL KWL  F +E  PLWK  I  KY+ S  G+IP
Sbjct: 299 VRWSMVTSPKLKGGLGINRIKDTNFALLNKWLWRFIHEDYPLWKRFIAVKYESSVQGDIP 358

Query: 61  MKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRKTLWHENSPLHLCRPRL 116
            K  Y S ++PW S+I+G+DWF S + WKI    + SF  + WH NSPL +  PRL
Sbjct: 359 YKSNYSSSRSPWHSMIQGLDWFQSQVTWKIKNDNNFSFWHSHWHTNSPLSVHYPRL 414

[Close]

BLAST of Cucsat.G11813 vs. NCBI nr
Match: KAA0041367.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (323), Expect = 1.16e-31
Identity = 60/116 (51.72%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 1   MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIP 60
           + W+ IT+ KE+ GLGI+R+ DT F LL KWL  + +E SPLWK II AKY     G+IP
Sbjct: 506 VNWAKITSPKERGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIP 565

Query: 61  MKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRKTLWHENSPLHLCRPRL 116
               + S ++PW SI KGV+WF  H+ WKI  G S SF  + WH+NSPL L  PRL
Sbjct: 566 CVCNHSSSRSPWFSICKGVEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSLHYPRL 621

[Close]

BLAST of Cucsat.G11813 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (323), Expect = 1.26e-31
Identity = 56/116 (48.28%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 1   MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIP 60
           +RW+ + + KEK GLGI+ V  T F LLCKWL  F  EK PLWK +I++KYDQ  +G  P
Sbjct: 662 IRWNQVVSPKEKGGLGIHSVHSTNFALLCKWLWKFLTEKEPLWKRLIISKYDQEKMGRFP 721

Query: 61  MKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRKTLWHENSPLHLCRPRL 116
            +GKY S  +PW ++   + WF  +I WK+N+G  +SF    W+ NSPL L  PRL
Sbjct: 722 SRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLVVPRL 777

[Close]

BLAST of Cucsat.G11813 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (322), Expect = 1.71e-31
Identity = 56/116 (48.28%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 1   MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIP 60
           +RW+ + + KEK GLGI+ V  T F LLCKWL  F  EK PLWK +I++KYDQ  +G  P
Sbjct: 568 IRWNQVVSPKEKGGLGIHFVHSTNFALLCKWLWKFLTEKEPLWKRLIISKYDQEKMGRFP 627

Query: 61  MKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRKTLWHENSPLHLCRPRL 116
            +GKY S  +PW ++   + WF  +I WK+N+G  +SF    W+ NSPL L  PRL
Sbjct: 628 SRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLAVPRL 683

[Close]

BLAST of Cucsat.G11813 vs. ExPASy TrEMBL
Match: A0A5A7VF18 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00550 PE=4 SV=1)

HSP 1 Score: 127 bits (319), Expect = 5.38e-33
Identity = 59/116 (50.86%), Postives = 72/116 (62.07%), Query Frame = 0


Query: 1   MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIP 60
           +RWS++TT K K GLGI  V DT   LLCKWL  F  EK  LW  +I  KY    +G+IP
Sbjct: 181 VRWSIVTTPKCKRGLGITNVKDTNIALLCKWLWRFQEEKDSLWVKLISVKYKGHHIGDIP 240

Query: 61  MKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRKTLWHENSPLHLCRPRL 116
            K KY ++K PW  IIKG+ WF +H  WKINEG +LSF  + W  + PL    PRL
Sbjct: 241 TKRKYSNMKTPWRQIIKGIGWFENHWRWKINEGKNLSFWLSNWTASGPLSSRYPRL 296

[Close]

BLAST of Cucsat.G11813 vs. ExPASy TrEMBL
Match: A0A5D3C384 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002530 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 5.41e-33
Identity = 59/116 (50.86%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 1   MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIP 60
           +RWS++T+ K K GLGINR+ DT F LL KWL  F +E  PLWK  I  KY+ S  G+IP
Sbjct: 299 VRWSMVTSPKLKGGLGINRIKDTNFALLNKWLWRFIHEDYPLWKRFIAVKYESSVQGDIP 358

Query: 61  MKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRKTLWHENSPLHLCRPRL 116
            K  Y S ++PW S+I+G+DWF S + WKI    + SF  + WH NSPL +  PRL
Sbjct: 359 YKSNYSSSRSPWHSMIQGLDWFQSQVTWKIKNDNNFSFWHSHWHTNSPLSVHYPRL 414

[Close]

BLAST of Cucsat.G11813 vs. ExPASy TrEMBL
Match: A0A5A7TI93 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00120 PE=4 SV=1)

HSP 1 Score: 129 bits (323), Expect = 5.63e-32
Identity = 60/116 (51.72%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 1   MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIP 60
           + W+ IT+ KE+ GLGI+R+ DT F LL KWL  + +E SPLWK II AKY     G+IP
Sbjct: 506 VNWAKITSPKERGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIP 565

Query: 61  MKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRKTLWHENSPLHLCRPRL 116
               + S ++PW SI KGV+WF  H+ WKI  G S SF  + WH+NSPL L  PRL
Sbjct: 566 CVCNHSSSRSPWFSICKGVEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSLHYPRL 621

[Close]

BLAST of Cucsat.G11813 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 129 bits (323), Expect = 6.12e-32
Identity = 56/116 (48.28%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 1   MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIP 60
           +RW+ + + KEK GLGI+ V  T F LLCKWL  F  EK PLWK +I++KYDQ  +G  P
Sbjct: 662 IRWNQVVSPKEKGGLGIHSVHSTNFALLCKWLWKFLTEKEPLWKRLIISKYDQEKMGRFP 721

Query: 61  MKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRKTLWHENSPLHLCRPRL 116
            +GKY S  +PW ++   + WF  +I WK+N+G  +SF    W+ NSPL L  PRL
Sbjct: 722 SRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLVVPRL 777

[Close]

BLAST of Cucsat.G11813 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 128 bits (322), Expect = 8.29e-32
Identity = 56/116 (48.28%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 1   MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIP 60
           +RW+ + + KEK GLGI+ V  T F LLCKWL  F  EK PLWK +I++KYDQ  +G  P
Sbjct: 568 IRWNQVVSPKEKGGLGIHFVHSTNFALLCKWLWKFLTEKEPLWKRLIISKYDQEKMGRFP 627

Query: 61  MKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRKTLWHENSPLHLCRPRL 116
            +GKY S  +PW ++   + WF  +I WK+N+G  +SF    W+ NSPL L  PRL
Sbjct: 628 SRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLAVPRL 683

The following BLAST results are available for this feature:

BLAST of Cucsat.G11813 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G11813 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065894.1	1.11e-32	50.86	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK151...	[more]
TYK05764.1	1.12e-32	50.86	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041367.1	1.16e-31	51.72	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041397.1	1.26e-31	48.28	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0044556.1	1.71e-31	48.28	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Cucsat.G11813 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VF18	5.38e-33	50.86	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C384	5.41e-33	50.86	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TI93	5.63e-32	51.72	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TIB8	6.12e-32	48.28	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TR15	8.29e-32	48.28	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G11813.T1	Cucsat.G11813.T1	mRNA