Cucsat.G11774 (gene) Cucumber (B10) v3

Overview
NameCucsat.G11774
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptiondehydrin DHN1
Locationctg1820: 4932437 .. 4933540 (+)
RNA-Seq ExpressionCucsat.G11774
SyntenyCucsat.G11774
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCTACTAATAATTCCATCCCTCGAAGTCTCTCTATATATAATCCAACAATCTTCACTTCCAAAACCATGCAATCAACATTCTCAAAACTAATCACTCTTTAAATTGTATTCAGTTCTTTTCGTTGTGTTTCGGTTTCCAAAGAAGTATGGCGCATTACCAATCTGGAAGAACCGATCAGTACGGCAACCCAATTCGCCAGACTGATGAATATGGCAACGTCATCTCCGAGACCGGTCAGTACGGTGACCCCCTTCGTCGGACCGGTGAGTTCCGTGAAACTGACCAGTATGGAAACCCTGGGCGTCGGACTGATGATGTGTTCGGTAACCCAGTTGGAACTGGGACGGGGATGGGGACCGGTGGGACGTATGAGACGACCGGGTACGGTGGGACAGGGTATGGCGGAGGGCACCATCAGCAGCATAAGGAGCATGGTGGCATACTTCATCGCTCTGGAAGCTCCAGTTCTAGCTCCGTAAGTGTATCCTAATCTCATCTTAATCCTTCACAATTCTTTTTAAAAATCTTATTTTAAGATAAAATAGAATTGAAGGAAATTATTTTTTATAACAAAAAGTGATATTTTGGTACATTTTTATTGGAAAAAAAGGATAATCGTCTCTAATAAAATCATCTCTCCCATTTCTTCATCCTATACACCAATAACTTTTTTTTGAAGTGAAACGTACTTGTGTCCTGAGTATTTTTAGTCTTTCTCCTGTGTAGGCTCTACAAGAAGGATTTTAGAATAACATAAAATTAAATTTCTACTTTCAGTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAGGAGAAGGTAAAGGAGAAGCTGCCAGGACATCATCGTCATGAAGAGCAAGCAGTGTCAACCACGACACCGGGAGGTTATACGTCGGCGGAGTACGGTGGGCAGCATGAGAAGAAGGGAATAATGGAGAAGATCAAGGAGAAGCTTCCGGGACATCACTGAGAATGACCTACTCGCTGTCCATGTTTGTTTGTTGTTTATATTAATAAAACTACCGCTGTGATCTTAGAAGGGATATCATCGATAAAGTATATATAAAAAGAAGGCTGTTATGTCGTCACATATGATTAAATAATTTTAAGGACTAGCTTGGTTGATGTGTTATGTTTGTGTGTATTATGTATAACTTCTGGTTGTGGTTGAATCAACAATGTTTCTCAATATGTTACTAAGTTTCTGTAGCATCTTTTTTTTGTAGTTATG

Coding sequence (CDS)

ATGGCGCATTACCAATCTGGAAGAACCGATCAGTACGGCAACCCAATTCGCCAGACTGATGAATATGGCAACGTCATCTCCGAGACCGGTCAGTACGGTGACCCCCTTCGTCGGACCGGTGAGTTCCGTGAAACTGACCAGTATGGAAACCCTGGGCGTCGGACTGATGATGTGTTCGGTAACCCAGTTGGAACTGGGACGGGGATGGGGACCGGTGGGACGTATGAGACGACCGGGTACGGTGGGACAGGGTATGGCGGAGGGCACCATCAGCAGCATAAGGAGCATGGTGGCATACTTCATCGCTCTGGAAGCTCCAGTTCTAGCTCCTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAGGAGAAGGTAAAGGAGAAGCTGCCAGGACATCATCGTCATGAAGAGCAAGCAGTGTCAACCACGACACCGGGAGGTTATACGTCGGCGGAGTACGGTGGGCAGCATGAGAAGAAGGGAATAATGGAGAAGATCAAGGAGAAGCTTCCGGGACATCACTGA

Protein sequence

MAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPGRRTDDVFGNPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHKEHGGILHRSGSSSSSSSEDDGHGGRRKKGLKEKVKEKLPGHHRHEEQAVSTTTPGGYTSAEYGGQHEKKGIMEKIKEKLPGHH
Homology
BLAST of Cucsat.G11774 vs. ExPASy Swiss-Prot
Match: P30185 (Dehydrin Rab18 OS=Arabidopsis thaliana OX=3702 GN=RAB18 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.5e-05
Identity = 57/131 (43.51%), Postives = 67/131 (51.15%), Query Frame = 0

Query: 27  MAHYQS----GRTDQYGNPIRQT-DEYGNVISETGQYGDPLRRTGEFRETDQYGNPGRRT 86
           MA YQ+      TD+YGNPI+Q  DEYGN +   G YG      G       YG  G+  
Sbjct: 1   MASYQNRPGGQATDEYGNPIQQQYDEYGNPMG-GGGYG--TGGGGGATGGQGYGTGGQG- 60

Query: 87  DDVFGNPVGTGTGMGTGGTYETTGYG----GTGYGGGHH---QQHKEH----GGILHRSG 142
              +G+    G G GTGG    TG G    GTG G  HH   Q HKE     GG+LHRSG
Sbjct: 61  ---YGS---GGQGYGTGGQGYGTGTGTEGFGTGGGARHHGQEQLHKESGGGLGGMLHRSG 120

BLAST of Cucsat.G11774 vs. ExPASy Swiss-Prot
Match: P09442 (Late embryogenesis abundant protein D-11 OS=Gossypium hirsutum OX=3635 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 40/84 (47.62%), Postives = 47/84 (55.95%), Query Frame = 0

Query: 57  QYGDPLRRTGEFRETDQYGNPGRRTDDVFGNPVGTGTGMGTGGTYETTGYGGTGYGGGHH 116
           QY  P     E  +TD YGNP RRTD+ +GNP+ T          + TG G  G GG HH
Sbjct: 7   QYSAP-----EVTQTDAYGNPTRRTDE-YGNPIPT----------QETGRGILGIGGHHH 66

Query: 117 QQHKEHGGILHRSGSSSSSSALQE 141
             H  HG  LHR+GSSSSSS+  E
Sbjct: 67  GGH--HG--LHRTGSSSSSSSSSE 70

BLAST of Cucsat.G11774 vs. ExPASy Swiss-Prot
Match: P12950 (Dehydrin DHN1 OS=Zea mays OX=4577 GN=DHN1 PE=1 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 2.7e-04
Identity = 44/92 (47.83%), Postives = 49/92 (53.26%), Query Frame = 0

Query: 54  ETGQYGDPLRRTGEFRETDQYGNP-GRRTDDVFGNPVGTGTGMGTGGTYETTGYGGTGYG 113
           E GQ G   R  G     DQYGNP G       G   GTGT   TGG  +   +GG G G
Sbjct: 2   EYGQQGQ--RGHGRTGHVDQYGNPVGGVEHGTGGMRHGTGT---TGGMGQLGEHGGAGMG 61

Query: 114 GGHHQQHKEH---GGILHRSGSSSSSSALQEG 142
           GG  Q  +E    GGILHRSGSSSSSS+  +G
Sbjct: 62  GGQFQPAREEHKTGGILHRSGSSSSSSSEDDG 88

BLAST of Cucsat.G11774 vs. NCBI nr
Match: XP_011653150.2 (dehydrin Rab18 [Cucumis sativus])

HSP 1 Score: 281 bits (720), Expect = 4.54e-93
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 0

Query: 1   AINILKTNHSLNCIQFFSLCFGFQRSMAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGD 60
           AINILKTNHSLNCIQFFSLCFGFQRSMAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGD
Sbjct: 110 AINILKTNHSLNCIQFFSLCFGFQRSMAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGD 169

Query: 61  PLRRTGEFRETDQYGNPGRRTDDVFGNPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHK 120
           PLRRTGEFRETDQYGNPGRRTDDVFGNPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHK
Sbjct: 170 PLRRTGEFRETDQYGNPGRRTDDVFGNPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHK 229

Query: 121 EHGGILHRSGSSSSSSALQEG 141
           EHGGILHRSGSSSSSS+  +G
Sbjct: 230 EHGGILHRSGSSSSSSSEDDG 250

BLAST of Cucsat.G11774 vs. NCBI nr
Match: KGN53289.1 (hypothetical protein Csa_015043 [Cucumis sativus])

HSP 1 Score: 227 bits (579), Expect = 1.49e-73
Identity = 111/115 (96.52%), Postives = 113/115 (98.26%), Query Frame = 0

Query: 27  MAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPGRRTDDVFG 86
           MAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPGRRTDDVFG
Sbjct: 1   MAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPGRRTDDVFG 60

Query: 87  NPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHKEHGGILHRSGSSSSSSALQEG 141
           NPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHKEHGGILHRSGSSSSSS+  +G
Sbjct: 61  NPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHKEHGGILHRSGSSSSSSSEDDG 115

BLAST of Cucsat.G11774 vs. NCBI nr
Match: XP_008452109.1 (PREDICTED: dehydrin DHN1 [Cucumis melo] >KAA0044783.1 dehydrin DHN1 [Cucumis melo var. makuwa] >TYK16682.1 dehydrin DHN1 [Cucumis melo var. makuwa])

HSP 1 Score: 218 bits (554), Expect = 9.57e-70
Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 0

Query: 27  MAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPGRRTDDVFG 86
           MAHYQSG TDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNP RRTDDVFG
Sbjct: 1   MAHYQSGGTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPVRRTDDVFG 60

Query: 87  NPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHKEHGGILHRSGSSSSSSALQEG 141
           NPVGTGTGMGTGGTYET+GYGG GYGGGHHQQHKEHGGILHRSGSSSSSS+  +G
Sbjct: 61  NPVGTGTGMGTGGTYETSGYGGAGYGGGHHQQHKEHGGILHRSGSSSSSSSEDDG 115

BLAST of Cucsat.G11774 vs. NCBI nr
Match: XP_038902571.1 (dehydrin Xero 1-like [Benincasa hispida])

HSP 1 Score: 182 bits (462), Expect = 7.81e-56
Identity = 96/115 (83.48%), Postives = 101/115 (87.83%), Query Frame = 0

Query: 27  MAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPGRRTDDVFG 86
           MAHYQSG TDQYGNPIRQTDEYGNVIS+T QYGDPLRRTGEFRETDQYGNP  RTD+ FG
Sbjct: 1   MAHYQSG-TDQYGNPIRQTDEYGNVISDTAQYGDPLRRTGEFRETDQYGNPVHRTDE-FG 60

Query: 87  NPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHKEHGGILHRSGSSSSSSALQEG 141
           NP+ TGTG    GTYET GYGGTGYGG HHQQHKEHGGILHRSGSSSSSS+  +G
Sbjct: 61  NPISTGTG----GTYETGGYGGTGYGGEHHQQHKEHGGILHRSGSSSSSSSEDDG 109

BLAST of Cucsat.G11774 vs. NCBI nr
Match: XP_022136834.1 (dehydrin Xero 1-like [Momordica charantia])

HSP 1 Score: 154 bits (389), Expect = 1.34e-44
Identity = 87/122 (71.31%), Postives = 96/122 (78.69%), Query Frame = 0

Query: 27  MAHYQS-----GRTDQYGNPIRQTDEYGNVISETG--QYGDPLRRTGEFRETDQYGNPGR 86
           MAHYQ+       TDQYGNPIR+TDEYGNVIS+TG  QYGDPL RT EFR+TDQYGNP R
Sbjct: 1   MAHYQNQYGAQSGTDQYGNPIRRTDEYGNVISDTGVGQYGDPLHRTDEFRQTDQYGNPVR 60

Query: 87  RTDDVFGNPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHKEHGGILHRSGSSSSSSALQ 141
           RTD+ FGNP+GTG     G TYE  GYGGTGYGGGHHQ HKEH G+L RSGSSSSSS+  
Sbjct: 61  RTDE-FGNPIGTG-----GATYEAGGYGGTGYGGGHHQ-HKEHQGVLRRSGSSSSSSSED 115

BLAST of Cucsat.G11774 vs. ExPASy TrEMBL
Match: A0A0A0KWM9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G045040 PE=3 SV=1)

HSP 1 Score: 227 bits (579), Expect = 7.24e-74
Identity = 111/115 (96.52%), Postives = 113/115 (98.26%), Query Frame = 0

Query: 27  MAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPGRRTDDVFG 86
           MAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPGRRTDDVFG
Sbjct: 1   MAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPGRRTDDVFG 60

Query: 87  NPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHKEHGGILHRSGSSSSSSALQEG 141
           NPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHKEHGGILHRSGSSSSSS+  +G
Sbjct: 61  NPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHKEHGGILHRSGSSSSSSSEDDG 115

BLAST of Cucsat.G11774 vs. ExPASy TrEMBL
Match: A0A5D3CYN8 (Dehydrin DHN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005140 PE=3 SV=1)

HSP 1 Score: 218 bits (554), Expect = 4.63e-70
Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 0

Query: 27  MAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPGRRTDDVFG 86
           MAHYQSG TDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNP RRTDDVFG
Sbjct: 1   MAHYQSGGTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPVRRTDDVFG 60

Query: 87  NPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHKEHGGILHRSGSSSSSSALQEG 141
           NPVGTGTGMGTGGTYET+GYGG GYGGGHHQQHKEHGGILHRSGSSSSSS+  +G
Sbjct: 61  NPVGTGTGMGTGGTYETSGYGGAGYGGGHHQQHKEHGGILHRSGSSSSSSSEDDG 115

BLAST of Cucsat.G11774 vs. ExPASy TrEMBL
Match: A0A1S3BTX2 (dehydrin DHN1 OS=Cucumis melo OX=3656 GN=LOC103493214 PE=3 SV=1)

HSP 1 Score: 218 bits (554), Expect = 4.63e-70
Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 0

Query: 27  MAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPGRRTDDVFG 86
           MAHYQSG TDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNP RRTDDVFG
Sbjct: 1   MAHYQSGGTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPVRRTDDVFG 60

Query: 87  NPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHKEHGGILHRSGSSSSSSALQEG 141
           NPVGTGTGMGTGGTYET+GYGG GYGGGHHQQHKEHGGILHRSGSSSSSS+  +G
Sbjct: 61  NPVGTGTGMGTGGTYETSGYGGAGYGGGHHQQHKEHGGILHRSGSSSSSSSEDDG 115

BLAST of Cucsat.G11774 vs. ExPASy TrEMBL
Match: A0A6J1C5G3 (dehydrin Xero 1-like OS=Momordica charantia OX=3673 GN=LOC111008435 PE=3 SV=1)

HSP 1 Score: 154 bits (389), Expect = 6.47e-45
Identity = 87/122 (71.31%), Postives = 96/122 (78.69%), Query Frame = 0

Query: 27  MAHYQS-----GRTDQYGNPIRQTDEYGNVISETG--QYGDPLRRTGEFRETDQYGNPGR 86
           MAHYQ+       TDQYGNPIR+TDEYGNVIS+TG  QYGDPL RT EFR+TDQYGNP R
Sbjct: 1   MAHYQNQYGAQSGTDQYGNPIRRTDEYGNVISDTGVGQYGDPLHRTDEFRQTDQYGNPVR 60

Query: 87  RTDDVFGNPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHKEHGGILHRSGSSSSSSALQ 141
           RTD+ FGNP+GTG     G TYE  GYGGTGYGGGHHQ HKEH G+L RSGSSSSSS+  
Sbjct: 61  RTDE-FGNPIGTG-----GATYEAGGYGGTGYGGGHHQ-HKEHQGVLRRSGSSSSSSSED 115

BLAST of Cucsat.G11774 vs. ExPASy TrEMBL
Match: A0A6J1J0Z6 (dehydrin DHN1-like OS=Cucurbita maxima OX=3661 GN=LOC111481701 PE=3 SV=1)

HSP 1 Score: 150 bits (379), Expect = 1.57e-43
Identity = 80/114 (70.18%), Postives = 92/114 (80.70%), Query Frame = 0

Query: 27  MAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPGRRTDDVFG 86
           M+H+QSG TDQYGNP+RQTDEYGNVI  TGQ+ DP  RTGEFR+TDQYGNP RR  + +G
Sbjct: 1   MSHFQSG-TDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGE-YG 60

Query: 87  NPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHKEHGGILHRSGSSSSSSALQE 140
            P+GTG      GTYET G+GG GYGGGH QQHKEHGGIL RSGSSSSSS+ ++
Sbjct: 61  EPIGTG------GTYETGGHGGVGYGGGHQQQHKEHGGILRRSGSSSSSSSSED 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P301855.5e-0543.51Dehydrin Rab18 OS=Arabidopsis thaliana OX=3702 GN=RAB18 PE=2 SV=1[more]
P094421.2e-0447.62Late embryogenesis abundant protein D-11 OS=Gossypium hirsutum OX=3635 PE=2 SV=1[more]
P129502.7e-0447.83Dehydrin DHN1 OS=Zea mays OX=4577 GN=DHN1 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
XP_011653150.24.54e-9397.16dehydrin Rab18 [Cucumis sativus][more]
KGN53289.11.49e-7396.52hypothetical protein Csa_015043 [Cucumis sativus][more]
XP_008452109.19.57e-7093.04PREDICTED: dehydrin DHN1 [Cucumis melo] >KAA0044783.1 dehydrin DHN1 [Cucumis mel... [more]
XP_038902571.17.81e-5683.48dehydrin Xero 1-like [Benincasa hispida][more]
XP_022136834.11.34e-4471.31dehydrin Xero 1-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A0A0KWM97.24e-7496.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G045040 PE=3 SV=1[more]
A0A5D3CYN84.63e-7093.04Dehydrin DHN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005140 ... [more]
A0A1S3BTX24.63e-7093.04dehydrin DHN1 OS=Cucumis melo OX=3656 GN=LOC103493214 PE=3 SV=1[more]
A0A6J1C5G36.47e-4571.31dehydrin Xero 1-like OS=Momordica charantia OX=3673 GN=LOC111008435 PE=3 SV=1[more]
A0A6J1J0Z61.57e-4370.18dehydrin DHN1-like OS=Cucurbita maxima OX=3661 GN=LOC111481701 PE=3 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000167DehydrinPFAMPF00257Dehydrincoord: 8..177
e-value: 4.5E-43
score: 147.6
IPR000167DehydrinPANTHERPTHR33346DEHYDRIN XERO 2-RELATEDcoord: 31..177
coord: 1..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..142
NoneNo IPR availablePANTHERPTHR33346:SF29DEHYDRIN RAB18coord: 31..177
coord: 1..41
IPR030513Dehydrin, conserved sitePROSITEPS00823DEHYDRIN_2coord: 168..175
IPR030513Dehydrin, conserved sitePROSITEPS00315DEHYDRIN_1coord: 107..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G11774.T1Cucsat.G11774.T1mRNA
Cucsat.G11774.T2Cucsat.G11774.T2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009631 cold acclimation
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009414 response to water deprivation
biological_process GO:0009415 response to water
cellular_component GO:0005829 cytosol