Cucsat.G11489 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G11489
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	transcription factor bHLH82
Location	ctg1808: 267542 .. 268969 (+)
RNA-Seq Expression	Cucsat.G11489
Synteny	Cucsat.G11489

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGGAATAAAAAAATAAAAAAGAAAGGAAAATGAGGGGGTGGTGAGAAACCAAAGGTGGTGTGTGCCAGAGAGAAGCTCCAGCTTTTGCTATTTAATAACCAAACACACAAAAAACCAAACTCTTAAAAACAAAAACCCATTCCCCATACCGATTACCAAATTTCATATATATATATATATAAAACATTATAATTTATATATTCCATACCCCTCCTCCATCTCCGTCCACCTTCTCCCCGCCGGACACTATGCAGCCCTGTAGCAGAGAAATGCAATCCCTCAACTCTCTCTTAAACCACTCCCAAATATCTCTCCAAGACCTCCATGCCGACCACCATTTGAATCCCCCACCGCCCCAGATCCCTCCCTCTCACTTCCACCATTTTGATCCCTCCGCCGCTTCCAACGACGACTTCCTCGAACAAATGCTCAACACAATCCCTTCCTGTTCTTGGCCTGACCTCAACCCTTCAAACCCTAAATCCCCTTGGGACCTTAACCCCATCAATAAACCCTCTAGAGATATCTCCGATGATCCTCACCAGAATCACCTCACTGCTACTTCTCCCGCCGCTAAGGCCGCCGTTATGCTTCAACAACAGCTTCTCTTGTCCAGAGGAATGTCTGGCTCTGCCGGAAATGGCGTTGCAGATCATGGCCTCCCCCCTATGCCTCTCTCCCTTGGAAATGCCGACTTGGATCGCTCCCAAAACGACGTCGTTGATGGATCCTGTTTCCGCCCACCGAACTCGGTTTGTTCTGTGATGGATCTGTCAATTCCTCGCCGGTGGATTCCAATTTTTAATAACTCTGTTTTTTTCCCCCTCAGGGTGGTTCTCTTCAATCGAATAGTTTTGGAGCTCCGGGAAACGTGATGAATCAAACTCCAGGAGGTGGGTCTGCCGGAGTTTCTCAATCTCAACCAAAGCAGAAGGTCAGAGCTCGTAGAGGCCAAGCGACTGACCCACACAGTATTGCCGAAAGGGTAAAACCAAAACTCCTTCCCCATAAATCTTCAACTCTCTGTTTTACTAAACCCAACACAAAACCGAATCATTCTCATTTCTCAGTATTTTTCCATTCCATTTTCTCACGTTTTCCAAGGAATCAAACAGAAACCAAATCAGGGTCTTCGTCTATTAATCTCAAGAAATTGATGTTCGCAAATTTGTCTTGTTTGTACAGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCTCTGCAAGAACTCGTTCCCAATGCAAACAAGGTCAGCGTTCCTTCCTTCCTTCCTTCATCTTCGTCACATCTTCCATTTTTCTTTTTTCTAAATATAAATTAATTAAATTATTAATCCCAAAATTTTGTTAAAAAGAAAAAAAGAGTCCGGAGTGTAGCAGCTCCGAACCTCTTTGCAAGACTGTAACCGCCGGTCAGTTTTGTACCTTCCTTGTAATTAAACCAAATGATCAAGGGCAATACAGTCACTGCTCTTCCGGTGAGAAACTAATCTCACGGAAATTCCGTGACACGTGTCGACAGTATAACATGGCAGTTACTAACAAAATGAGAAGCATGTTAAATATTAGCAACGCCTCCGTTTTCTAAAACATGTACTTTGGAAAATGGAATATTTATGTGAATATATAGTAATAAATAGCAAAATTAATAATCATAATTTATTTATTATATATATGAATCTGAAAGGGTTATGGAATTTCAGACGGATAAAGCTTCGATGCTTGATGAGATCATCGACTACGTTAAATTCCTCCAGCTCCAAGTCAAGGTATGACTCTAAATTCAACCCCATATTTATTTTGTTATTTTATTATAATTATGAAATATGATTGAATTGTTATTGTTATTGTTATTTTATATATATAAAAGATTCCCTGAATGGAAGAATTATTAGTTTAAAATTTGTTATTTGTATTTGGTGTAGGTTCTGAGCATGAGCAGATTGGGGGGTGCAGCTGCTGTGGCTCCTCTAGTCGCTGACGTCTCCTCTGAGGTAAATAAATAAGTATTATAACCTTTTTTTTTTCTTTAGTTGAAGAGATAAATATGTAAAGTTTAATTAGTTCAATCAAATTAAACCCCCGATTTAGATAACAATTGTAATTTGAACTTGAAAGTTAAGTGATTGCAATTTGATATTAAAGGGTGATTTTCTTCTGAATGTGAGTTATATAATAATTAATGAAAGTAAGGAGTTTAGGAAGATTGTAACATTATTATTTTTATATAAAAGTAAGGGTAGAAGATGGAAAGTATTAATTCAGGTTTAGGGTTTAATTGATTAAAAATAGAGAGAGAGAGAGAGATATAAGTTAAAGTGGATGAGGCGGCCAAAAATTCCTTTAAGGGAAGAGGACAAAAGGAAAAGGGGAGCACGCGTGCGAAGGCTTTTATCAGCTTTTGGTTTCCCACTCCTTTTCAATTGAAATGACAACAAACAAAGAAAATTAAATAATATTTAATCATTTGGTAATTAGTAAATAATATTACTGATAACAACAACAATGAACAAACGGTGTGGTTTCAGGGTGGGGGTGAGTGCATGCAAGGAAGTGGAGCCCAAGCTGGTGGTCGGAATTCCAACAATAATGGCAACGGCGGAAACCAAACTGCCTCGACCAACGATAGCATGACGGTGACGGAGCAGCAAGTGGCAAAGCTAATGGAGAAAGATATGGGATCGGCGATGCAGTATTTGCAAGGGAAAGGGCTTTGTCTTATGCCCATATCTCTAGCAACTGCGATCTCTACGTCCACCTGTCACTCCAGGAATCCCTTGATGAACGGCGGCGGCGGTGGCGGTGGGAGTCAACATCCCGTGATGGGATCCAACGGTGAAGGGCCATCGTCGCCGAGTATGTCGGTGCTGACTGTGCAATCGACGAGCATGGGGAACGGCTCCGTCAAGGACGCCGCCTCCGTATCAAAGCCGTGAAGACGGCGGCGCGTGGAGAATTGACTTTTTGATTTTAAAAAGAAAAGGAGTAAACTTTTGTAGAAGTCTACGAAAATAAGGCAAGTCTTGTAATACGGCGCCGTATTCTCGTAGACTTTTATTTGGCCTACAAACCCTAACATAAAAAGTAAAAGAAGAAAAAACTCTAAAAAAGCAAAGGTAAAGGCAAAGGCAAAGGCAAAGGAAGCACATCCTCTCCTTCTGACATCAAAAGCCTTTCCTTTTTTTCTTTCTTTCTTTCTTTCTTTCTTCCTATTTTTACATTACAATTATTGTCTTTTTCTTTTCCTTTTCCTTTAACTACTTGTTGACTCAATGGTTTGTGTTCTAATTCAGTAATTAATTACTAATTAAATTAGAGATAGTTTTGTTTTCGTTTTTGGGTTCTTCCTCCCAAAAGGAAAGATGGTCTTTTGGTTAAGTTTAATTTAATAATTCAAG

Coding sequence (CDS)

ATGCAGCCCTGTAGCAGAGAAATGCAATCCCTCAACTCTCTCTTAAACCACTCCCAAATATCTCTCCAAGACCTCCATGCCGACCACCATTTGAATCCCCCACCGCCCCAGATCCCTCCCTCTCACTTCCACCATTTTGATCCCTCCGCCGCTTCCAACGACGACTTCCTCGAACAAATGCTCAACACAATCCCTTCCTGTTCTTGGCCTGACCTCAACCCTTCAAACCCTAAATCCCCTTGGGACCTTAACCCCATCAATAAACCCTCTAGAGATATCTCCGATGATCCTCACCAGAATCACCTCACTGCTACTTCTCCCGCCGCTAAGGCCGCCGTTATGCTTCAACAACAGCTTCTCTTGTCCAGAGGAATGTCTGGCTCTGCCGGAAATGGCGTTGCAGATCATGGCCTCCCCCCTATGCCTCTCTCCCTTGGAAATGCCGACTTGGATCGCTCCCAAAACGACGTCGTTGATGGATCCTGTTTCCGCCCACCGAACTCGGGTGGTTCTCTTCAATCGAATAGTTTTGGAGCTCCGGGAAACGTGATGAATCAAACTCCAGGAGGTGGGTCTGCCGGAGTTTCTCAATCTCAACCAAAGCAGAAGGTCAGAGCTCGTAGAGGCCAAGCGACTGACCCACACAGTATTGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCTCTGCAAGAACTCGTTCCCAATGCAAACAAGACGGATAAAGCTTCGATGCTTGATGAGATCATCGACTACGTTAAATTCCTCCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGGGGTGCAGCTGCTGTGGCTCCTCTAGTCGCTGACGTCTCCTCTGAGGGTGGGGGTGAGTGCATGCAAGGAAGTGGAGCCCAAGCTGGTGGTCGGAATTCCAACAATAATGGCAACGGCGGAAACCAAACTGCCTCGACCAACGATAGCATGACGGTGACGGAGCAGCAAGTGGCAAAGCTAATGGAGAAAGATATGGGATCGGCGATGCAGTATTTGCAAGGGAAAGGGCTTTGTCTTATGCCCATATCTCTAGCAACTGCGATCTCTACGTCCACCTGTCACTCCAGGAATCCCTTGATGAACGGCGGCGGCGGTGGCGGTGGGAGTCAACATCCCGTGATGGGATCCAACGGTGAAGGGCCATCGTCGCCGAGTATGTCGGTGCTGACTGTGCAATCGACGAGCATGGGGAACGGCTCCGTCAAGGACGCCGCCTCCGTATCAAAGCCGTGA

Protein sequence

MQPCSREMQSLNSLLNHSQISLQDLHADHHLNPPPPQIPPSHFHHFDPSAASNDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPSRDISDDPHQNHLTATSPAAKAAVMLQQQLLLSRGMSGSAGNGVADHGLPPMPLSLGNADLDRSQNDVVDGSCFRPPNSGGSLQSNSFGAPGNVMNQTPGGGSAGVSQSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGGSQHPVMGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP

Homology

[Close]

BLAST of Cucsat.G11489 vs. ExPASy Swiss-Prot
Match: D0PX88 (bHLH transcription factor RHL1 OS=Lotus japonicus OX=34305 GN=RHL1 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.5e-35
Identity = 102/163 (62.58%), Postives = 115/163 (70.55%), Query Frame = 0


Query: 1   MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGG-------NQTASTND 60
           MSRLGGAAAVAPLVAD+SSEGGG          GG +   NG GG          ++TND
Sbjct: 238 MSRLGGAAAVAPLVADISSEGGG--------GGGGGDCVTNGAGGVLPRSTTTAASTTND 297

Query: 61  SMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGG 120
           S+T+TE QVAKLME+DMGSAMQYLQGKGLCLMPISLATAIST+TCH+R+PL+        
Sbjct: 298 SLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRSPLIPNNLANLA 357

Query: 121 SQHPVMGSNGEGPSSPSMSVLTVQSTSMGNGS-VKDAASVSKP 156
           +      SNGEGPSSP+MSVLTVQS   GN S VKD   VSKP
Sbjct: 358 A---AAASNGEGPSSPNMSVLTVQSAVAGNDSTVKD---VSKP 386

[Close]

BLAST of Cucsat.G11489 vs. ExPASy Swiss-Prot
Match: Q9ZUG9 (Transcription factor LRL1 OS=Arabidopsis thaliana OX=3702 GN=LRL1 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.2e-26
Identity = 88/172 (51.16%), Postives = 105/172 (61.05%), Query Frame = 0


Query: 1   MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 60
           MSRLGGAA+V+  +    SE GG     S A  GG  +  N         +NDS+T+TE 
Sbjct: 202 MSRLGGAASVSSQI----SEAGGSHGNASSAMVGGSQTAGN---------SNDSVTMTEH 261

Query: 61  QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGGSQHPVMG 120
           QVAKLME+DMGSAMQYLQGKGLCLMPISLATAIST+TCHSRNPL+ G     G       
Sbjct: 262 QVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPLIPGAVADVG------- 321

Query: 121 SNGEGPSSPSMSVLTVQSTS--MGNG----------------SVKDAASVSK 155
               GPS P++S +T+QSTS  MG+G                +VK+A SVSK
Sbjct: 322 ----GPSPPNLSGMTIQSTSTKMGSGNGKLNGNGVTERSSSIAVKEAVSVSK 349

[Close]

BLAST of Cucsat.G11489 vs. ExPASy Swiss-Prot
Match: Q9LSQ3 (Transcription factor LRL3 OS=Arabidopsis thaliana OX=3702 GN=LRL3 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-22
Identity = 65/106 (61.32%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 1   MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 60
           MSRLGGA +V P +  +S+E GG  +    A   G N N     GN T S+N+S+  TEQ
Sbjct: 163 MSRLGGAGSVGPRLNGLSAEAGGR-LNALTAPCNGLNGN-----GNATGSSNESLRSTEQ 222

Query: 61  QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMN 107
           +VAKLME+DMGSAMQYLQGKGLCLMPISLATAIS+ST HSR  L N
Sbjct: 223 RVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISSSTTHSRGSLFN 262

[Close]

BLAST of Cucsat.G11489 vs. ExPASy Swiss-Prot
Match: Q8S3D5 (Transcription factor LRL2 OS=Arabidopsis thaliana OX=3702 GN=LRL2 PE=2 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 4.7e-18
Identity = 72/159 (45.28%), Postives = 88/159 (55.35%), Query Frame = 0


Query: 1   MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 60
           MSRLGGAA+ +  +++                AGG + N + +G            +TE 
Sbjct: 194 MSRLGGAASASSQISE---------------DAGGSHENTSSSG---------EAKMTEH 253

Query: 61  QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGGSQHPVMG 120
           QVAKLME+DMGSAMQYLQGKGLCLMPISLAT IST+TC SR+P +   G           
Sbjct: 254 QVAKLMEEDMGSAMQYLQGKGLCLMPISLATTISTATCPSRSPFVKDTG----------- 310

Query: 121 SNGEGPSSPSMSVLTVQSTSMGNGS----VKDAASVSKP 156
                P SP++S   V +   GNGS    VKDA SVSKP
Sbjct: 314 ----VPLSPNLSTTIVAN---GNGSSLVTVKDAPSVSKP 310

[Close]

BLAST of Cucsat.G11489 vs. ExPASy Swiss-Prot
Match: O22768 (Transcription factor UNE12 OS=Arabidopsis thaliana OX=3702 GN=UNE12 PE=1 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 8.1e-10
Identity = 49/103 (47.57%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 1   MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 60
           MSRLGGA AVAPLV D+      E   G G +              Q A    S   TE+
Sbjct: 210 MSRLGGAGAVAPLVTDMPLSSSVEDETGEGGRT------------PQPAWEKWSNDGTER 269

Query: 61  QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNP 104
           QVAKLME+++G+AMQ LQ K LC+MPISLA AI     HS+ P
Sbjct: 270 QVAKLMEENVGAAMQLLQSKALCMMPISLAMAI----YHSQPP 296

[Close]

BLAST of Cucsat.G11489 vs. NCBI nr
Match: XP_004146688.1 (transcription factor bHLH82 [Cucumis sativus] >KGN65242.1 hypothetical protein Csa_019945 [Cucumis sativus])

HSP 1 Score: 282 bits (722), Expect = 1.16e-91
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 60
           MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ
Sbjct: 268 MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 327

Query: 61  QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGGSQHPVMG 120
           QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGGSQHPVMG
Sbjct: 328 QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGGSQHPVMG 387

Query: 121 SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 155
           SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP
Sbjct: 388 SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 422

[Close]

BLAST of Cucsat.G11489 vs. NCBI nr
Match: KAA0035059.1 (transcription factor bHLH82 [Cucumis melo var. makuwa])

HSP 1 Score: 272 bits (695), Expect = 1.07e-87
Identity = 152/155 (98.06%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 60
           MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ
Sbjct: 261 MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 320

Query: 61  QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGGSQHPVMG 120
           QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGG  SQHPVM 
Sbjct: 321 QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGG--SQHPVMA 380

Query: 121 SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 155
           SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP
Sbjct: 381 SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 413

[Close]

BLAST of Cucsat.G11489 vs. NCBI nr
Match: XP_008443870.1 (PREDICTED: transcription factor bHLH82 [Cucumis melo])

HSP 1 Score: 272 bits (695), Expect = 1.32e-87
Identity = 152/155 (98.06%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 60
           MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ
Sbjct: 268 MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 327

Query: 61  QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGGSQHPVMG 120
           QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGG  SQHPVM 
Sbjct: 328 QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGG--SQHPVMA 387

Query: 121 SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 155
           SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP
Sbjct: 388 SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 420

[Close]

BLAST of Cucsat.G11489 vs. NCBI nr
Match: TYK03619.1 (transcription factor bHLH82 [Cucumis melo var. makuwa])

HSP 1 Score: 271 bits (692), Expect = 3.04e-87
Identity = 151/155 (97.42%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 60
           MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ
Sbjct: 261 MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 320

Query: 61  QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGGSQHPVMG 120
           QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGG  SQHPVM 
Sbjct: 321 QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGG--SQHPVMA 380

Query: 121 SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 155
           SNGEGPSSPSMSVLTVQSTSMGNGSV+DAASVSKP
Sbjct: 381 SNGEGPSSPSMSVLTVQSTSMGNGSVRDAASVSKP 413

[Close]

BLAST of Cucsat.G11489 vs. NCBI nr
Match: KAG6589782.1 (Transcription factor basic helix-loop-helix 66, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 257 bits (656), Expect = 8.29e-82
Identity = 142/155 (91.61%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 60
           MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQ GGRNSNN G GGNQTAS+NDSMTVTEQ
Sbjct: 264 MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQGGGRNSNNGGGGGNQTASSNDSMTVTEQ 323

Query: 61  QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGGSQHPVMG 120
           QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCH+RNP+MNGGG     QHPVMG
Sbjct: 324 QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHTRNPMMNGGG-----QHPVMG 383

Query: 121 SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 155
           +NGEGP+SPSMSVLTVQSTSMGNGSVKDAASVSKP
Sbjct: 384 TNGEGPTSPSMSVLTVQSTSMGNGSVKDAASVSKP 413

[Close]

BLAST of Cucsat.G11489 vs. ExPASy TrEMBL
Match: A0A0A0LWM2 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G269350 PE=4 SV=1)

HSP 1 Score: 282 bits (722), Expect = 5.63e-92
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 60
           MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ
Sbjct: 268 MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 327

Query: 61  QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGGSQHPVMG 120
           QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGGSQHPVMG
Sbjct: 328 QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGGSQHPVMG 387

Query: 121 SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 155
           SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP
Sbjct: 388 SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 422

[Close]

BLAST of Cucsat.G11489 vs. ExPASy TrEMBL
Match: A0A5A7T129 (Transcription factor bHLH82 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G001150 PE=4 SV=1)

HSP 1 Score: 272 bits (695), Expect = 5.19e-88
Identity = 152/155 (98.06%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 60
           MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ
Sbjct: 261 MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 320

Query: 61  QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGGSQHPVMG 120
           QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGG  SQHPVM 
Sbjct: 321 QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGG--SQHPVMA 380

Query: 121 SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 155
           SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP
Sbjct: 381 SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 413

[Close]

BLAST of Cucsat.G11489 vs. ExPASy TrEMBL
Match: A0A1S3B943 (transcription factor bHLH82 OS=Cucumis melo OX=3656 GN=LOC103487364 PE=4 SV=1)

HSP 1 Score: 272 bits (695), Expect = 6.37e-88
Identity = 152/155 (98.06%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 60
           MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ
Sbjct: 268 MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 327

Query: 61  QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGGSQHPVMG 120
           QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGG  SQHPVM 
Sbjct: 328 QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGG--SQHPVMA 387

Query: 121 SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 155
           SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP
Sbjct: 388 SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 420

[Close]

BLAST of Cucsat.G11489 vs. ExPASy TrEMBL
Match: A0A5D3BZW3 (Transcription factor bHLH82 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00460 PE=4 SV=1)

HSP 1 Score: 271 bits (692), Expect = 1.47e-87
Identity = 151/155 (97.42%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 60
           MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ
Sbjct: 261 MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 320

Query: 61  QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGGSQHPVMG 120
           QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGG  SQHPVM 
Sbjct: 321 QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGG--SQHPVMA 380

Query: 121 SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 155
           SNGEGPSSPSMSVLTVQSTSMGNGSV+DAASVSKP
Sbjct: 381 SNGEGPSSPSMSVLTVQSTSMGNGSVRDAASVSKP 413

[Close]

BLAST of Cucsat.G11489 vs. ExPASy TrEMBL
Match: A0A6J1E2F8 (transcription factor bHLH82-like OS=Cucurbita moschata OX=3662 GN=LOC111429967 PE=4 SV=1)

HSP 1 Score: 257 bits (656), Expect = 4.90e-82
Identity = 142/155 (91.61%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQ 60
           MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQ GGRNSNN G GGNQTAS+NDSMTVTEQ
Sbjct: 271 MSRLGGAAAVAPLVADVSSEGGGECMQGSGAQGGGRNSNNGGGGGNQTASSNDSMTVTEQ 330

Query: 61  QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGGGSQHPVMG 120
           QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCH+RNP+MNGGG     QHPVMG
Sbjct: 331 QVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHTRNPMMNGGG-----QHPVMG 390

Query: 121 SNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 155
           +NGEGP+SPSMSVLTVQSTSMGNGSVKDAASVSKP
Sbjct: 391 TNGEGPTSPSMSVLTVQSTSMGNGSVKDAASVSKP 420

The following BLAST results are available for this feature:

BLAST of Cucsat.G11489 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
D0PX88	9.5e-35	62.58	bHLH transcription factor RHL1 OS=Lotus japonicus OX=34305 GN=RHL1 PE=2 SV=1	[more]
Q9ZUG9	6.2e-26	51.16	Transcription factor LRL1 OS=Arabidopsis thaliana OX=3702 GN=LRL1 PE=1 SV=1	[more]
Q9LSQ3	3.2e-22	61.32	Transcription factor LRL3 OS=Arabidopsis thaliana OX=3702 GN=LRL3 PE=2 SV=1	[more]
Q8S3D5	4.7e-18	45.28	Transcription factor LRL2 OS=Arabidopsis thaliana OX=3702 GN=LRL2 PE=2 SV=2	[more]
O22768	8.1e-10	47.57	Transcription factor UNE12 OS=Arabidopsis thaliana OX=3702 GN=UNE12 PE=1 SV=2	[more]

BLAST of Cucsat.G11489 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146688.1	1.16e-91	100.00	transcription factor bHLH82 [Cucumis sativus] >KGN65242.1 hypothetical protein C...	[more]
KAA0035059.1	1.07e-87	98.06	transcription factor bHLH82 [Cucumis melo var. makuwa]	[more]
XP_008443870.1	1.32e-87	98.06	PREDICTED: transcription factor bHLH82 [Cucumis melo]	[more]
TYK03619.1	3.04e-87	97.42	transcription factor bHLH82 [Cucumis melo var. makuwa]	[more]
KAG6589782.1	8.29e-82	91.61	Transcription factor basic helix-loop-helix 66, partial [Cucurbita argyrosperma ...	[more]

BLAST of Cucsat.G11489 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWM2	5.63e-92	100.00	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G269350 PE=4 S...	[more]
A0A5A7T129	5.19e-88	98.06	Transcription factor bHLH82 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A1S3B943	6.37e-88	98.06	transcription factor bHLH82 OS=Cucumis melo OX=3656 GN=LOC103487364 PE=4 SV=1	[more]
A0A5D3BZW3	1.47e-87	97.42	Transcription factor bHLH82 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A6J1E2F8	4.90e-82	91.61	transcription factor bHLH82-like OS=Cucurbita moschata OX=3662 GN=LOC111429967 P...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 199..254 e-value: 6.0E-8 score: 34.4
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 208..256
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 215..241 e-value: 2.4E-4 score: 21.1
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 210..259 score: 11.953588
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..205
None	No IPR available	PANTHER	PTHR16223:SF120	TRANSCRIPTION FACTOR BHLH69	coord: 44..242
None	No IPR available	PANTHER	PTHR16223	TRANSCRIPTION FACTOR BHLH83-RELATED	coord: 44..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G11489.T1	Cucsat.G11489.T1	mRNA
Cucsat.G11489.T2	Cucsat.G11489.T2	mRNA
Cucsat.G11489.T6	Cucsat.G11489.T6	mRNA
Cucsat.G11489.T4	Cucsat.G11489.T4	mRNA
Cucsat.G11489.T3	Cucsat.G11489.T3	mRNA
Cucsat.G11489.T7	Cucsat.G11489.T7	mRNA
Cucsat.G11489.T5	Cucsat.G11489.T5	mRNA
Cucsat.G11489.T8	Cucsat.G11489.T8	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding