Cucsat.G10612 (gene) Cucumber (B10) v3

Overview
NameCucsat.G10612
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptiontranscription elongation factor B polypeptide 3
Locationctg1679: 142569 .. 147369 (+)
RNA-Seq ExpressionCucsat.G10612
SyntenyCucsat.G10612
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAAAATTTTCCAAAATGATAGGAAGGGAAATAAAAAAATTCATAAACCATAATTTTCTTTAAAAAAAATAAAAATTTGGGATTGTTTATTCAGTGGCGCATTTTAGCCAGTTGGAGAAGAATATCGCAAAACAATGGAAGGTAATCAGATGAGGATTATTGCAGGCCAATTCGTTCGTTTCTAGTTCAGCGATCGTTCTCCTCCTTCAACGATTCTCGTCTTCCTCTTCTCAGACTGTCGGTAAGATCATCAACATCTCGATTTATTCATCTATCTCATTTCATTTGCGATTGAAATTGTTGAATCGATTTCTTCCTTTCCTTCCCCCCCCCCCCCCCCCCCATTTCTTCTCAACTTTCCTTAATGTTTTGTATGATCGCTTACGATATCTATAATAATCATATTTTTACGAACCAGATCTGTTTATTCCTTTCGTTGATCGTCTATTTTATGAATTTAGGATCGTTTGAATTGAAGTCGTTGAACTTGATTCTCATTCGAAATTTCTTAGCTAAGCAGAAAAGATTTGGAATCATTGTTTTTTTTTACAGCTATTTTGCTCGCTTGATCGGCGGGTTATTTAGCTGTCTGTCTTATATTCTGATTTGTTGCTTAAAGCATAGAGCTATTTAGGATGCTGTGTATATTCAGGCATTTCACTGTGAAGCGTATGGAATTTAGTTAACTCAGTCAATTTTTGGTGAATGAAGTGCCTGAATGGGAGAGAGTTTGATTTTCCCTTTTTTCCCCCTTCTAGTGGAGTTGGTTACCAGCTATGTTACCGGTTTATTTATTGAATCAGTATTTTGTCTACTTATGTAAATTGATTTGTTTGTTTGTTTCTTGTTCTTAGCCTGGCAACCTGAGAAAGAAGAGATGTACCGAGTGCGAAAAATTCCTTCGTTGGTTGATCTTTGTGTTAACAAAGCTATAGATAATCTAAGGTTCCTTGGGGATGTTGGCGAAACTGATATACATCTTTTAGATCGTATTTTGCCACATTGCACAGTTGACCAATTAATGCATGTGGAGAAGAGTTCAGAAGTAAGATTGGATGAATTTGCTTATTGTTTTTAACTATCTAGTTTTGTTTTAGTATATATGCTCAGTTGAGTACGAACTTCTTACAGGGAAGAGATCTTACTCCAGTTACTGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAAAGAAAGTACCACTACTGTAATTGAGAGGATGCGGCAAAAAAGAGTCGCATTTAGATGGATTCAATTATATGAGGTAGCTTTCCTTTTACTTCTCTTCTCATGCCATTTACTTTGAGATTTGAGTATTGAATGATTTTGGTCAGCAAAGATAATTGATTCCTCTGAAAATTACCATTAAAATGAAGCTATCCATTTTCAGGCGAAGATGGAGGACATTGAAAAGAACGAGAGCAAAGCTGCAGATCGAATAAAACAAAGCTATCTAAAGGAAAATGCCCGTATGTTCTATATCACATTTGCATTCTCTCTAATGGATTCCTCATAATTTCAAATTTGAACTAACAATTAGCTAGATCATGTGATGCATGCTATCTGGAAATTGTTTTCCACTCCCAACTCATATTTAATAAGAGGTTTACAATATATAGGAAGCTATTTTTGGTTCGTAGTTCAGAGTGTGGGAGGAAGATTTGTATTGAAGAAGGGAATGGCGAGAGGTTCGGAAAGTTGGAGTTAGAGTTGGGTGCATCAGCTTGGGTAATAGATTGCTTAGTGGCTGCTGCGGAGCTGAGCAATCCTTTGGGTTTTTGGTGGAGAAGATGGCTGGAGCGTACGAACATTTTCTTTCAAGTGCTTGCAAACTCTAGACGTAGATTTGCACTATTATTTGTTGAATCCTTTAATGGATGAAGAACGAGGGTTATCATTCCTGATGGCAAGAAAGGTAGTGGTTGGAGACTATTGACAGCAGAGGTTTATGGGCTCCTTCCATCCTCAACAAAGATTATTTTGCCCTTAACTACAGAAACACAGTTGACTTGGTTTGGGTGGGGAAGTCAACTCAATTTCTTTGGACTTGGTTTCAAAGGCGAGTTTAGAGGGTAGGAGAGGTTCCAAGAGGAGGCTGAAGTTATGGAAGGAATTAGATACAGTGGTCAAGGCTGATTGTTCAAAAGTGGAGTCGGAAGGTTCTCCAGAAGATAAGAAGTGGGAAATTTGATTTGTGTTTTGATTGGGAAGCAACGATGATTATCAAAATGACTAGTGCAGCAGTGGAATGAGAGGATTTAAAGAGGGTTTTGAGGGAGCATGGTTTCTGACTTTTGGACTTAATTTTTTTTTGTGATAACTTAGTTGTGGGCACTTGTGATTTGAAGGTGGAGGCGGAGGAATTACTACGACTGGGATCATTTTAAACTCAAGATTTCTTCTTCCAATCTTGGGATTTCTAGATGGTAGAGGAGGAAAGGAAACAAGTCTTTAAAGGTTCTTGGGTTACGACGCTTGATGTTCCCCCTTTTCTCTGAATGAAGGAATGTATTGCCTCTTTGCCATATTGGAGTGGTCGGTTGCTCGATGAAGAGGTGGAGATTAGTGGTTTGAATTGGTTGAAGGAATTTAGTTTTAGGGCAAAAGGTACCGCCTAAGAAGCACGGACACGAACACAACAAGACAAGGCAATACATCAATTTCTAAAATATTAGGACACAGACACGTTGGGGATATGCTATTTTTAAAAATTATTCTTTCTTATAATATATGTAAATTTAATGTAAAATACTAAATGTTCTTCATTTCCTCAACAAAAAAAAGTTCTTCACTAAAAAAAAGCATAAACGGTCAACTGTCAAATTAATATTTAATCACTGTAGTTTGTAGGAGTACAAAACATAATATGTATTATGCAACATTCAACCTATACCTAACAATAGAAAGTGGAAAGAGATTTTCCATACAAAATAATAAAGTATTAAAGGCTAATAAAAAGCTATCTCTCAAATCTCATTGACATCTTATTAAACCACCAATTCACCCAAAAGCTTAAGCTCATAGTTGAAGGCAAATTTAATTATATATCACCAACACTCCTCACTTGTGGGTTTAAAATATTTGAAAGGCCCTACAAGTGAAAATCAATTTTAATTGGAGAGGAAACAACAATGCATGAGCTTGAACAGAGGACCTCCCTGGACCACCTACTCTGATATCATATTAAACTACCAATTCACCCAAAAGTTGCTCATGGTTGAAGACAAATTAAATTATATATCACCTACACATCTTCATCCTTATCAACACCATCATCCTTAATAATTTCAGCCTCCAACTTTGGATCATCTAAAGAAAAGTTAGCTACTTCAAGCATGCCTAGATCTTCAAGCGAATCAAAAAGCATTTCCAGCAATGTCCCCATGACTTGGTTTCTCCTTTTGAATATTCTGGAGTTCTTCTAGACAAAAGACGAAGGTTATTGTGAATAAATACCAAATCCTTTGCACATTGAGGCATTCTTAATGAAGTTAATAAAGGAATATATGCTCTAATTTCTTCACAACATGAAGAGGATGATGGTTGCCCTAAAATTTTAAAATCAATCTTTTGAAGCATTGGTACATAAGTCCTATGAGTTGCCCATCAACTTCTAGAATCTGTAGTGTATCTCTCGGATATGGAATCATAGTCATCAAAATCTCCATTTTTTTTTGTAGAAAATTGAGCAAATTCTACATTTACTTTTGCACAATCCTCAAGGCTACTAAAATATCACTTCAGACACTTCATTCTCTCTCTAGTTAGTTCGAGCAACTCAATTAGGATCTTTTGTAAGCCATTCTTCCCTATAGTATCTATGTATAGTTTTTAAGAAAAAATGGTAAACTCAGAATTCATTACTTATAAGCTTAGAATGTGCTAAACTAAAATTAATTAGATACCTTGGATTCAAAGAATGTGTTAAATAATGAAGTGGAGTATTGCTATTTGTTCCAACAATTAATGAGAATGTTATACACCACCTCGTAGAAAGAAGAGAATTCACTTTGTCGCAACCCTTCATGTTTATATATGGACATCTTCACCTTTTCAATCATGGTACCCCACATGTCATACACTAAATGCAAACAAGGTGTGTCTGTATCACAAGCTCTAATCATGTCGTATATGGGTGAAGTGAATGACAAAATATAATTAATTTTGTTCTACTAAATGTCATCGAGCTCCAACTCCTTTACATGCCTTGCCTTCACCACGTCATCTTCTCTATAACTTTTCCATTTATCACTGATGACCATAGTTTGTAAGCCACCTTTAATAAGCTTAAACCTTTTAAGCATAATAATAGATGAAAAATGTGTTTTGACTAATGAAAGCAATTTAAGAGGCACAAACTTATCAAACATGACGAGCCTCATGGAATGGTTCATGATAACAAATTTCACGACCATGACATTCCCAACAATATAAAAAATCCAAACGTAGTCTCCATAAGCAACTTGATTATTCTCAACATTCTTGGCAACATAAATGTTTTCAAGGCAAGATTTAGTGTAGGAACAATGCATGGTGTCCATATAATTGTCAGAAATTGTGCTTTGAAAATTTGTCCTACACCTTTGCATTTGGGAGCATTATTTGTTTTCACACGAACAACATTTTCATGACCGACTTCATTAATCACTCTTTCATCAAATTTGTAATGGAGTACTTATCCTTAATTTCACAGGAGCAGTCCATCGATTTTAGAAACATTGGTTTGCCATTAGAAATGGCCATGAAGTTAATCAACGACCTCCTTTGTGAGCCATTCCAACCATAACTCACAATGGTCACTCCCTTTTTTTGCCATTCACCTTTAGTATGATATCAATAGTCTTTCAATATTAGTCTTCTCTTAAACTAGTCCTCAACATATTATATCCTAGAGGCTTATATTCTGGCAACGGGGATTCAAGCTTCTAGAGGTTTAAGGCAAGGGGATTCTTTATTCCTTTCTTGTTCTTGCTTACTGTTGATGTTTTAAGTCGGCTTATCTTGAAGGGTGTGGAAGGAAGCATCATCGAGCTGTTTAGGTTAGGCTCGAATGAGGTGGTCTTATCACATCTCCAGTTTGCTGATGACACGATGTTATTTTGTTCGAGCAAAGAGCACTCTTTTTTTATCCTTCATCGTATGGGGAATTTTTTGAACCCATGTCTGCTCTTAAAATCAGTAGGAGCAAGTGTCAAACTATGGGGATCAACAGCAACCAAGAGAAGATTGAGAGATGGGTGGAGATGTTTGGCTGTTAGGTTGGATTCTTTCCCTCTGGTTATCTTGGGCAATTCAAGAGCTATGACGTTTTGGAATCCTATCTTTGAGAAGATTTGTAAGAGGCTTGCCTCGTGGAAGAAAAGTTTATTTTCCCAGGCGAGGAGGTTAACTCTAATCAGATTGGTGCTCAGTAGTATCCTTGTGTATTACTTTTCCTTCTTTTGGGCCCTGGTTCTATTTGTAAAAGCCTGGAAAAAATTTATGAGGGATTTTCTAAGGTAGGAGTAGATGAGGGGAAGGGCTCTCACTTGGTTAGTTGGGAGGCGGTTGAGCGGTTTCTGCATAAGGGTGGGTTGGAGACTGGTAGCTTAATGCTAAGTGGCGAAAGAGGTTAAAGGCACACACTGGAACCTGTGGAAAGATATTTCTTGTGGAAGGATATTTCTTTTGAGCTTCCTACTTTCTCTTACTTTGTTAAGTGTATTGTGGGGAATGGTAAGGACACATCTTTTTGGGAGGATTAGTGGGTGGGGTATAGAGCTCTCTCTTCTGTCTTTCCGCATCTCTACCACCTTTCTTTGTTGAAACATTGTTCGATCTTGGATTTCTTGATTTGGTTCGAGAACTTTATCTCTTTTTTCCTTTGGATTTTGTCATCACTTGTTCAATAGGGAAACAATAGAGGTTGCCTTTTTTTTTTTTCTTTATTGGAGGTGTGTACTTTTAGAGAGGGTAGAAAGGGATGTTCGTATTTGGAGTCGGAATCCTAGTGAAGGGTTCTCTTGTAAATCCTTTCTTTACGGTTAATATTGGATCACTCTCTCGTTGGGGAGTCTGTGCCCTGTTCGATGTCATTTGGAGGATTAAGATTCCTAAGAAAGTCAGGTTCTTTATTTGGCAAGTTTTTGCTTGGTTGTGTGAACACTTTTGATAGGCTGGTAAGGAGAAGAACTTCGCTTATGGGGTTTCTTTGCTGTATCCTTTGTCGGAAGGCAGAGGAAGACCTGGATCATCTCTTTTGGGGTTGCTAGTGTGTGAGATTGGTGTGGAATCTTTTCTTGTAGGGAGTTCGATTTTAGCTTCGCTGGGCAGAGAGATGTTTGTGCTATGATCAAGGAGTTCCTTCTCCATCCACATTTCGAAGACAAAGACCACTTCTTGTGGGGTATGTTTGGTGGTTTGGGATATTTAGGGGGAAAGGAATGACGGGGTGTTTAAAGGGAAGGGAAAGGACCCCTGGGAGGTTTGGTCGTTGACGAGATTCAATGTGTCTCTTTGGACTTTGGTTTTGAAGCTCTTTCGTCATTTTACTTTAGGAAACATTTCGGTTGGACCCTCTTCCTTTAGTGTGTGTGTGTGTGTGTGGTGTGTGGGGGGGGGGGGGGGGGGGGGGGGTTATATTCTTTCATTTTTTCTTAATGGAAGCTGTTTGAATAAAAAAATAATAATAATAAAAAAGTGGTTTTCTGTTGGTTCATCGCTGGATAGATATTGTTGATTTTTACATGTAATTTAGGAATCATTGGTGTTTTTGCAAGTAGGTATTTTCTTAACATATGAAATTTTAATGATTACCATGAACATTTTAGGAAAACAAAGTCGTCAAATACAGATTTGCAGCAAGGTTCCCCCATCAAGCAATAAGAGAAGCTTTGGAGGTAAACTTTATCTAGTGGATTCTAACTCTGGCAAGGCTTCAGCTTGACACCCTGCAAAGAAAAAGAAACATTTACATGTTATTTTTTTTCTTGATTTTCTGTAGGAAGCGGATATGGATACAATGTGGCAAACACTAAGAACAAGATACTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGGTAAAACTATTGAATTGGTACTGAGTGTAAATAAAATATGGTCATGGTCGTACAATTTATAGCATGTTGCTTGCTTAGAGTAACTGCCTAAAATTGAATATGCCCTAAAATTTGATCCATCTTGGCTTAGGATCTGATAAATCGGCATATCAAATAGATTTGGGGTTTTTCATCTATTTTAAATTCTCCATACCAAAATTATTTTTGAGCGGTATCTTACTGCAAGCTTTATACTGGAGAACGGTTGTTATAAGAATGTCTATGTGGATCCTTGATCAGCTGAATCTAATCTCACTAAATTTCTAGAATCAATAGCTCTCATTTATAAACTGTGCCTACCCCTCCACCCTCGAAGCAAAACCCTATTCCACAATGTTCAATGAAAAGTTATCCAATCATAATACGTTTCTATCTTTGGACAGTCAAGAGATGAAAAATATAAAAGCATGGCGAAGAAATGCAGTGCAGAAGAGTTCTGAGTAAGTTGCAATTGTTTGCAGGATCATTCTCAATGCTTTCGAAACCTCCTGTTCCCACACTTGACAATGATGTTCACTCTGCTTCTTTAATTTTGCAGTATATCTTCCACAAAGAAGCCGATGTTTTCTGGAAGGGAATCCGCTTCAACTTCTAAAAATACTTCCACTCATATGGCCAAAAGATGGTAGCACTTCCATTTACCTTTTTCTTTTACCAAATGCAAAGTTCTGTTCTCTCACCCAACTCCAATGTTGTAATATCTTCAATTTAGTTATCTCATGGTTCGAAAATTGCTCCTTTACCCTCTGACACTTCTGAAATGCCATGCCCTGTGTATAATTTTATAATTCGTAGTTGCTTTCTCTTATAATGCAATGTTGTTTATTTTACACAAATTTTATCCTTCAAGTATGCAGTTTAATGTGTGATAATATCACAATCTAAATTAGCAAGTTATCGGATTTACTTTGGTCTATATTATTTTAGTGATGGAATGATCCGACTTTGCTCTTTGTTGGTTGTGGTCGTCTTTTGCATTTCGTTGATAGCATTGTAATAGGCTAATAGCCTTTGTTTTTCTGTAACTGAAGATTGATTGTTGATTGTGGTGGTTGTATCTTTTATATATTTCATTTTTCCCCCTCGTGAGAGTTTGCATCTTCCAGACATTGTAATCTTTTAAAGTAAAAGTTTTATCATGTTATTGTTGTAACGTTGTATTAACACAATTTGAACTCTAAATATAAATCAAGCTAAAATATT

Coding sequence (CDS)

ATGTACCGAGTGCGAAAAATTCCTTCGTTGGTTGATCTTTGTGTTAACAAAGCTATAGATAATCTAAGGTTCCTTGGGGATGTTGGCGAAACTGATATACATCTTTTAGATCGTATTTTGCCACATTGCACAGTTGACCAATTAATGCATGTGGAGAAGAGTTCAGAAGGAAGAGATCTTACTCCAGTTACTGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAAAGAAAGTACCACTACTGTAATTGAGAGGATGCGGCAAAAAAGAGTCGCATTTAGATGGATTCAATTATATGAGGCGAAGATGGAGGACATTGAAAAGAACGAGAGCAAAGCTGCAGATCGAATAAAACAAAGCTATCTAAAGGAAAATGCCCGAAAACAAAGTCGTCAAATACAGATTTGCAGCAAGGTTCCCCCATCAAGCAATAAGAGAAGCTTTGGAGGAAGCGGATATGGATACAATGTGGCAAACACTAAGAACAAGATACTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGTCAAGAGATGAAAAATATAAAAGCATGGCGAAGAAATGCAGTGCAGAAGAGTTCTGATATATCTTCCACAAAGAAGCCGATGTTTTCTGGAAGGGAATCCGCTTCAACTTCTAAAAATACTTCCACTCATATGGCCAAAAGATGGTAG

Protein sequence

MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW
Homology
[Close]
BLAST of Cucsat.G10612 vs. NCBI nr
Match: XP_031743455.1 (transcription elongation factor B polypeptide 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 259 bits (662), Expect = 9.69e-86
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120

Query: 121 QSYLKENAR 129
           QSYLKENAR
Sbjct: 121 QSYLKENAR 129

[Close]
BLAST of Cucsat.G10612 vs. NCBI nr
Match: XP_004143189.1 (transcription elongation factor B polypeptide 3 isoform X1 [Cucumis sativus] >KAE8646931.1 hypothetical protein Csa_021040 [Cucumis sativus])

HSP 1 Score: 259 bits (662), Expect = 3.14e-85
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120

Query: 121 QSYLKENAR 129
           QSYLKENAR
Sbjct: 121 QSYLKENAR 129

[Close]
BLAST of Cucsat.G10612 vs. NCBI nr
Match: XP_038900481.1 (transcription elongation factor B polypeptide 3-like isoform X2 [Benincasa hispida])

HSP 1 Score: 255 bits (651), Expect = 4.01e-84
Identity = 126/129 (97.67%), Postives = 128/129 (99.22%), Query Frame = 0 

Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120
           TP+TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120

Query: 121 QSYLKENAR 129
           QSY KENAR
Sbjct: 121 QSYQKENAR 129

[Close]
BLAST of Cucsat.G10612 vs. NCBI nr
Match: TYJ98274.1 (transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 256 bits (653), Expect = 7.35e-84
Identity = 126/129 (97.67%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYLKENAR 129
           QSYLKENAR
Sbjct: 121 QSYLKENAR 129

[Close]
BLAST of Cucsat.G10612 vs. NCBI nr
Match: XP_016901950.1 (PREDICTED: transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo])

HSP 1 Score: 256 bits (653), Expect = 1.02e-83
Identity = 126/129 (97.67%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYLKENAR 129
           QSYLKENAR
Sbjct: 121 QSYLKENAR 129

[Close]
BLAST of Cucsat.G10612 vs. ExPASy TrEMBL
Match: A0A0A0KGZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169320 PE=4 SV=1)

HSP 1 Score: 261 bits (667), Expect = 3.12e-86
Identity = 132/156 (84.62%), Postives = 138/156 (88.46%), Query Frame = 0 

Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120

Query: 121 QSYLKENARSYFWFVVQSVGGRFVLKKGMARGSESW 156
           QSYLKENA+      ++   G    K  +  G+ +W
Sbjct: 121 QSYLKENAQCGRKICIEEGNGERFGKLELELGASAW 156

[Close]
BLAST of Cucsat.G10612 vs. ExPASy TrEMBL
Match: A0A5D3BGR1 (Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00180 PE=4 SV=1)

HSP 1 Score: 256 bits (653), Expect = 3.56e-84
Identity = 126/129 (97.67%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYLKENAR 129
           QSYLKENAR
Sbjct: 121 QSYLKENAR 129

[Close]
BLAST of Cucsat.G10612 vs. ExPASy TrEMBL
Match: A0A1S4E1U0 (transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 256 bits (653), Expect = 4.96e-84
Identity = 126/129 (97.67%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYLKENAR 129
           QSYLKENAR
Sbjct: 121 QSYLKENAR 129

[Close]
BLAST of Cucsat.G10612 vs. ExPASy TrEMBL
Match: A0A1S3C4D6 (transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 256 bits (653), Expect = 8.14e-84
Identity = 126/129 (97.67%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYLKENAR 129
           QSYLKENAR
Sbjct: 121 QSYLKENAR 129

[Close]
BLAST of Cucsat.G10612 vs. ExPASy TrEMBL
Match: A0A5A7ULV4 (Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003030 PE=4 SV=1)

HSP 1 Score: 256 bits (653), Expect = 1.56e-83
Identity = 126/129 (97.67%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYLKENAR 129
           QSYLKENAR
Sbjct: 121 QSYLKENAR 129

The following BLAST results are available for this feature:
BLAST of Cucsat.G10612 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G10612 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031743455.19.69e-86100.00transcription elongation factor B polypeptide 3 isoform X2 [Cucumis sativus][more]
XP_004143189.13.14e-85100.00transcription elongation factor B polypeptide 3 isoform X1 [Cucumis sativus] >KA... [more]
XP_038900481.14.01e-8497.67transcription elongation factor B polypeptide 3-like isoform X2 [Benincasa hispi... [more]
TYJ98274.17.35e-8497.67transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. ma... [more]
XP_016901950.11.02e-8397.67PREDICTED: transcription elongation factor B polypeptide 3 isoform X2 [Cucumis m... [more]
BLAST of Cucsat.G10612 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGZ53.12e-8684.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169320 PE=4 SV=1[more]
A0A5D3BGR13.56e-8497.67Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. ... [more]
A0A1S4E1U04.96e-8497.67transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=36... [more]
A0A1S3C4D68.14e-8497.67transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=36... [more]
A0A5A7ULV41.56e-8397.67Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. ... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 79..99
NoneNo IPR availableGENE3D6.10.250.3180coord: 21..108
e-value: 1.7E-10
score: 42.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 169..200
NoneNo IPR availablePANTHERPTHR47543OS08G0169600 PROTEINcoord: 3..201
IPR010684RNA polymerase II transcription factor SIII, subunit APFAMPF06881Elongin_Acoord: 26..116
e-value: 3.0E-12
score: 47.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G10612.T1Cucsat.G10612.T1mRNA
Cucsat.G10612.T3Cucsat.G10612.T3mRNA
Cucsat.G10612.T6Cucsat.G10612.T6mRNA
Cucsat.G10612.T4Cucsat.G10612.T4mRNA
Cucsat.G10612.T5Cucsat.G10612.T5mRNA
Cucsat.G10612.T2Cucsat.G10612.T2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006368 transcription elongation from RNA polymerase II promoter
biological_process GO:0006414 translational elongation
cellular_component GO:0070449 elongin complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0003746 translation elongation factor activity