Cucsat.G10347 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G10347
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Unknown protein
Location	ctg1675: 288337 .. 289099 (-)
RNA-Seq Expression	Cucsat.G10347
Synteny	Cucsat.G10347

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAAGAACCATTGACAGGTTACGATCTACTGGAGGATTCAAAATCTTTCAAGTTCTTCCAACCAGGTAGTAATGTATATTTTTTCAATTATAAACAAGTTGTAAATTCTTTAACTTATTGTATGACTAATTACAAGGGAGACCAGAATATATGATGGCCAAGGGATCAAGAAGCAAGCACGAAATTCAAAAAACATAAGAAAACAAGGGAGGAACGAACCTCCAAGGGAAGATCCTGCTCTACAGAAAAAGCAAAGAATAAAAAGGCTGGTAAAATGTCTTATTAACATTTCTTTTCAAATTAATACAATTACGTTTTTAATGTTGTGGCCTGTGTAGGTTTCTAAAATGCAAATTATGAGAAGGAAACATGAAGAAGATAAAGAAGAAGAGATTGAAGAAAAGGGATGTCTGGTATATTGTTGTACTTCAATTCATAAAATATACCATATTGTCTAAATTCATAATATAACCTTAGCACATGAAAATAATGAAAGTGAAGAAGACCAGCAAAGAGAGGAAGATAAAGACGGAGAAGGCAAGCAAAGACAACAATAAATGAAGAATCCAGTTCATCCACAAAAGAGACAAGAGAACAAAATGAGGGATCCATGGATAATAAAAGGAGTAAAAAGAGTACAAAAAAGGAAAAGAAGGAAACAATATATGAAATTCGATAACTGCAACCATACCATTTTTATGGATTTTCTCTATAACGGCAACATTTTTAGAACATAGGTGAAGACTACTAAGAAGGAAACAA

Coding sequence (CDS)

ACAAGAACCATTGACAGGTTACGATCTACTGGAGGATTCAAAATCTTTCAAGTTCTTCCAACCAGAATATATGATGGCCAAGGGATCAAGAAGCAAGCACGAAATTCAAAAAACATAAGAAAACAAGGGAGGAACGAACCTCCAAGGGAAGATCCTGCTCTACAGAAAAAGCAAAGAATAAAAAGGCTGGTTTCTAAAATGCAAATTATGAGAAGGAAACATGAAGAAGATAAAGAAGAAGAGATTGAAGAAAAGGGATGTCTGAAGACCAGCAAAGAGAGGAAGATAAAGACGGAGAAGGCAAGCAAAGACAACAATAAATGA

Protein sequence

TRTIDRLRSTGGFKIFQVLPTRIYDGQGIKKQARNSKNIRKQGRNEPPREDPALQKKQRIKRLVSKMQIMRRKHEEDKEEEIEEKGCLKTSKERKIKTEKASKDNNK

Homology

[Close]

BLAST of Cucsat.G10347 vs. NCBI nr
Match: KAA0048427.1 (hypothetical protein E6C27_scaffold61G00010 [Cucumis melo var. makuwa] >TYK28223.1 hypothetical protein E5676_scaffold600G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 52.0 bits (123), Expect = 5.64e-05
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 40  RKQGRNEPPREDPALQKKQRIKRLVSKMQIMRRKHEEDKEEEIEEKGCLKTSKER 94
           +K+GR EPP+ED  +QKKQ+IK LVS+ ++ RR+ +E K++E+EEK   K  K R
Sbjct: 85  KKRGRTEPPKEDVTVQKKQKIKSLVSRREVYRREAKEKKQKEVEEKAIKKEQKAR 139

[Close]

BLAST of Cucsat.G10347 vs. ExPASy TrEMBL
Match: A0A5D3DX05 (DUF1985 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00010 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.73e-05
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 40  RKQGRNEPPREDPALQKKQRIKRLVSKMQIMRRKHEEDKEEEIEEKGCLKTSKER 94
           +K+GR EPP+ED  +QKKQ+IK LVS+ ++ RR+ +E K++E+EEK   K  K R
Sbjct: 85  KKRGRTEPPKEDVTVQKKQKIKSLVSRREVYRREAKEKKQKEVEEKAIKKEQKAR 139

The following BLAST results are available for this feature:

BLAST of Cucsat.G10347 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G10347 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048427.1	5.64e-05	50.91	hypothetical protein E6C27_scaffold61G00010 [Cucumis melo var. makuwa] >TYK28223...	[more]

BLAST of Cucsat.G10347 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DX05	2.73e-05	50.91	DUF1985 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 60..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G10347.T2	Cucsat.G10347.T2	mRNA