Cucsat.G10259 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G10259
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	RING-type domain-containing protein
Location	ctg1674: 45786 .. 47889 (-)
RNA-Seq Expression	Cucsat.G10259
Synteny	Cucsat.G10259

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCATTTAGTTATTTTCAAATTAAAACTTCACAAAAAGAAAAAAGGAAAAGAAAAAATAAGTATTGGAAACCTTCTTCATCCTCTCTCCTTCAAAACTCAATCGGCATCCTTGGCGTTGGTTTGGCGGAGAGAAAATGATGGGGGAAGATCGCGGCCTTCCTTCTCATTGTTTTTCTCATCTTCTTTTCTTTTTCTGAATCCTTCCCATATTCATCCAAAGGCATGCTCATCCACTTTCTCTAGAGGTAAATTCGTATTTTACATTTTCCATTCTTCATCTTTGATTTTGATTTTGATTTTGATTTTCTTTCATATTTAGTTCTATTTTCATTGGGTTTCCTTCCTTTCAGTTTCTGTTCACACGTTCCGTTGGAATGTTGGGGGCGATTGATTTTGTTGTTGTTGATAATTTTGTGAATTATTCATATCCAAACTCTGATCGAAGTTTAGCTTTCGAATATGCATCTTGGAGCAAGTGTATTGCCTCCGCACCAAATTTCTTTCTTTTTCTCTATTCTGGAATATGATGTTTATATATATCTGTTGCAATGTTTGTCAACATTGTTCGCTTTTGATTATTTTGTGACACTGGGTAAATTGTTTTTCTGCTTTTTTTTTTTTTCCTTTTGTTCTTTTGTGTTTTATTTATTTTTGGCAGTAATCTACTTATGGATTGTATATTCAAAATTGTTGAATTGGCGGTAGTCATCTGATGCCAGCAGAGAAGTTTTGTTGTGATTCTATTGTTTGTTCATAGTGTTGAAACCTTTGGAAGAAAAATGTCCTTATTTCTCGAAAATTTTCCATTCAAGTGATGCTTTGGTATGGTTTAATTAGATTTGGTTTTTAGTTTCTGAAAATTAAGCCTATATAAGATCTTCTTTTACCTTTTAACTATTGTTCTTTGTTGTCTAACATTCTTAAAATTCAAGTCAAAATTTGAAAATTAAAAAAATATTTATAAACTTGTTTGTTTTTTTAACTTTGGGTAAGACTTTAAATTGTGGTAAGAAAATGAGAGGAAATAAGCTTCATTTTCAAAAACTAAAAACTAAAAACCAAATTTTGGTAACTAATTTGTCTTTTAGTACAAACCATTCCGTCAATTTCTATTCTCTAGAAAGGTACCATAGTTTTTAAAATATCGTCTTTAAAGATATTATTACTAAGATGTATAATATTCTTTGATTGGATCTCTAATAATTTGGAAGAACTGTTTCTTTGTGGGAGGCTTCGTAGTTTTTCTTTCATAGATGAACATCTATTTTGCAGATGTCATGTTGATGGCATATTTAAACAATTCTTCTGTCGTCCCTTTTGGAACATCCGATAAAATTGAAACAATTCTTCTGTCAGGATGTGGAAGTTGGCATCGAACGCCATTGCTGGCATTCGATCTAAGAAAAACTCAGATGTATCTAAGCAAGTTTTCTGGGAGTGCTCGGATGACGAGGCTTGCTCGGAAGCCAGTAGAGATGAAGAATTGGAGTGCCCTATATGCTGGGAATCTTTTAACATTGTGGAGAATGTACCTTATGTCTTATGGTGTGGCCATTCCTTGTGCAAAAATTGTGTATTAGGCCTTCAAGGGTCTGTGCTGAAACTAGCTACTCGCCAAATCCGAATCCCAATCGTCATTTCGTGCCCTTGGTGTCATCAGCTGTCACTAAGGGTGGTGTACAAGGGGAACCTGAAGTTTCCCAGCAAGAACTTTTTTCTTCTTTGGATGGTTGAGAGCTTTAATGGCAATGAGGGAAAACTTGACCATTCCTTCAATTCGGATAATCACCCACTTTTTTCTTTGCCATCGGGTACCGGTACCGGTACCGTTACTTCTGAGAGGCGGCGATTGTTTTTCTATAATCATTTGGATTTCGTCGTCCATTTAATCTTCAAGTTTCTACTTCTTGTCATATTTGTTCTGATAGTTGTTTTTGTAATCCCTGGAAGTGCACTCATCTTGCTGCTTTATCTGCTAATCACTTTACTTTTTGCATTGCCATCTTTGCTGATATTTTACCTTGCATTCCATGCTTTGGAAAAGCTTATGAATGATATAACTTCATGAAATGTTTTAACCAATCTCATTTGGTGAATTTCAA

Coding sequence (CDS)

ATGTGGAAGTTGGCATCGAACGCCATTGCTGGCATTCGATCTAAGAAAAACTCAGATGTATCTAAGCAAGTTTTCTGGGAGTGCTCGGATGACGAGGCTTGCTCGGAAGCCAGTAGAGATGAAGAATTGGAGTGCCCTATATGCTGGGAATCTTTTAACATTGTGGAGAATGTACCTTATGTCTTATGGTGTGGCCATTCCTTGTGCAAAAATTGTGTATTAGGCCTTCAAGGGTCTGTGCTGAAACTAGCTACTCGCCAAATCCGAATCCCAATCGTCATTTCGTGCCCTTGGTGTCATCAGCTGTCACTAAGGGTGGTGTACAAGGGGAACCTGAAGTTTCCCAGCAAGAACTTTTTTCTTCTTTGGATGGTTGAGAGCTTTAATGGCAATGAGGGAAAACTTGACCATTCCTTCAATTCGGATAATCACCCACTTTTTTCTTTGCCATCGGGTACCGGTACCGGTACCGTTACTTCTGAGAGGCGGCGATTGTTTTTCTATAATCATTTGGATTTCGTCGTCCATTTAATCTTCAAGTTTCTACTTCTTGTCATATTTGTTCTGATAGTTGTTTTTGTAATCCCTGGAAGTGCACTCATCTTGCTGCTTTATCTGCTAATCACTTTACTTTTTGCATTGCCATCTTTGCTGATATTTTACCTTGCATTCCATGCTTTGGAAAAGCTTATGAATGATATAACTTCATGA

Protein sequence

MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPYVLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFFLLWMVESFNGNEGKLDHSFNSDNHPLFSLPSGTGTGTVTSERRRLFFYNHLDFVVHLIFKFLLLVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLAFHALEKLMNDITS

Homology

[Close]

BLAST of Cucsat.G10259 vs. ExPASy Swiss-Prot
Match: Q9H0X6 (RING finger protein 208 OS=Homo sapiens OX=9606 GN=RNF208 PE=1 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 2.4e-05
Identity = 27/69 (39.13%), Postives = 35/69 (50.72%), Query Frame = 0


Query: 33  ACSEASRDEELECPICWESFNIVENVPYVLWCGHSLCKNCVLGLQGSVLKLATRQIRIPI 92
           A S A+  E LECP C  S+N+ +  P VL C HS+C+ C+  L  S  K          
Sbjct: 131 AASSAAAGEPLECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYK-------- 190

Query: 93  VISCPWCHQ 102
            ISCP C +
Sbjct: 191 FISCPTCRR 191

[Close]

BLAST of Cucsat.G10259 vs. ExPASy Swiss-Prot
Match: Q8K0W3 (RING finger protein 208 OS=Mus musculus OX=10090 GN=Rnf208 PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 9.1e-05
Identity = 24/61 (39.34%), Postives = 32/61 (52.46%), Query Frame = 0


Query: 41  EELECPICWESFNIVENVPYVLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCH 100
           E LECP C  ++N+ +  P VL C HS+C+ C+  L  S  K           ISCP CH
Sbjct: 143 EPLECPTCGHTYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYK--------FISCPTCH 195

Query: 101 Q 102
           +
Sbjct: 203 R 195

[Close]

BLAST of Cucsat.G10259 vs. ExPASy Swiss-Prot
Match: Q96D59 (E3 ubiquitin-protein ligase RNF183 OS=Homo sapiens OX=9606 GN=RNF183 PE=1 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 2.7e-04
Identity = 24/66 (36.36%), Postives = 34/66 (51.52%), Query Frame = 0


Query: 36  EASRDEELECPICWESFNIVENVPYVLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVIS 95
           +  R+ E ECP+CW  FN   + P +L C HS C  C+  L  S++  A R+      + 
Sbjct: 4   QQGRELEAECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHL--SLVTPARRR------LL 61

Query: 96  CPWCHQ 102
           CP C Q
Sbjct: 64  CPLCRQ 61

[Close]

BLAST of Cucsat.G10259 vs. ExPASy Swiss-Prot
Match: Q13049 (E3 ubiquitin-protein ligase TRIM32 OS=Homo sapiens OX=9606 GN=TRIM32 PE=1 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 2.7e-04
Identity = 22/63 (34.92%), Postives = 34/63 (53.97%), Query Frame = 0


Query: 41  EELECPICWESFNIVENVPYVLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCH 100
           E LECPIC ESF   +  P +L CGH++C+ C+  L  S +            + CP+C 
Sbjct: 16  EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN----------GVRCPFCS 68

Query: 101 QLS 104
           +++
Sbjct: 76  KIT 68

[Close]

BLAST of Cucsat.G10259 vs. ExPASy Swiss-Prot
Match: Q8CH72 (E3 ubiquitin-protein ligase TRIM32 OS=Mus musculus OX=10090 GN=Trim32 PE=1 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 2.7e-04
Identity = 22/63 (34.92%), Postives = 34/63 (53.97%), Query Frame = 0


Query: 41  EELECPICWESFNIVENVPYVLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCH 100
           E LECPIC ESF   +  P +L CGH++C+ C+  L  S +            + CP+C 
Sbjct: 17  EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN----------GVRCPFCS 69

Query: 101 QLS 104
           +++
Sbjct: 77  KIT 69

[Close]

BLAST of Cucsat.G10259 vs. NCBI nr
Match: XP_011655300.2 (uncharacterized protein LOC101218619 [Cucumis sativus] >XP_031741070.1 uncharacterized protein LOC101218619 [Cucumis sativus] >KAE8648500.1 hypothetical protein Csa_008920 [Cucumis sativus])

HSP 1 Score: 460 bits (1183), Expect = 4.77e-163
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFSLPSGTGTGTVTSERRRLFFYNHLDFVVHLIFK 180
           LLWMVESFNGNEGKLDHSFNSDNHPLFSLPSGTGTGTVTSERRRLFFYNHLDFVVHLIFK
Sbjct: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFSLPSGTGTGTVTSERRRLFFYNHLDFVVHLIFK 180

Query: 181 FLLLVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLAFHALEKLMNDITS 236
           FLLLVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLAFHALEKLMNDITS
Sbjct: 181 FLLLVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLAFHALEKLMNDITS 236

[Close]

BLAST of Cucsat.G10259 vs. NCBI nr
Match: XP_008465708.1 (PREDICTED: uncharacterized protein LOC103503329 [Cucumis melo] >XP_008465709.1 PREDICTED: uncharacterized protein LOC103503329 [Cucumis melo] >XP_008465710.1 PREDICTED: uncharacterized protein LOC103503329 [Cucumis melo] >KAA0040509.1 zf-RING_LisH domain-containing protein [Cucumis melo var. makuwa] >TYK23453.1 zf-RING_LisH domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 424 bits (1091), Expect = 4.37e-149
Identity = 220/236 (93.22%), Postives = 225/236 (95.34%), Query Frame = 0


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MWKLASNAIAGIRSKKNSDV KQVFWECSDDE CSEASRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAIAGIRSKKNSDVPKQVFWECSDDEVCSEASRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHSLCKNCVLGLQGSVLKLATRQ+RIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQMRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFSLPSGTGTGTVTSERRRLFFYNHLDFVVHLIFK 180
           LLWMVESFNGNEGKLDHSFNSDN  +FSLPSGT    VTSERRRLFFYNHLD V+HL+FK
Sbjct: 121 LLWMVESFNGNEGKLDHSFNSDNQSVFSLPSGT----VTSERRRLFFYNHLDCVIHLVFK 180

Query: 181 FLLLVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLAFHALEKLMNDITS 236
           FLL VIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLA HAL+KLMNDITS
Sbjct: 181 FLLTVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLALHALDKLMNDITS 232

[Close]

BLAST of Cucsat.G10259 vs. NCBI nr
Match: XP_038890517.1 (uncharacterized protein LOC120080047 [Benincasa hispida])

HSP 1 Score: 417 bits (1071), Expect = 5.63e-146
Identity = 214/236 (90.68%), Postives = 220/236 (93.22%), Query Frame = 0


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MWKLASNAIAGIR KKNS   KQVFWECSDDE CSEASRDEELECPICWESFN+VENVPY
Sbjct: 1   MWKLASNAIAGIRPKKNSTAPKQVFWECSDDEVCSEASRDEELECPICWESFNLVENVPY 60

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPI +SCPWCHQLSLRVVY+GNLKFPSKNFF
Sbjct: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIFLSCPWCHQLSLRVVYRGNLKFPSKNFF 120

Query: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFSLPSGTGTGTVTSERRRLFFYNHLDFVVHLIFK 180
           LLWMVESFNGNEGK DHSFN DN P+FSLPS T T T  SERRRLFFYNHLDFVVHLIFK
Sbjct: 121 LLWMVESFNGNEGKHDHSFNGDNQPVFSLPSETDTDTDISERRRLFFYNHLDFVVHLIFK 180

Query: 181 FLLLVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLAFHALEKLMNDITS 236
           FLL+VIF+LIVVFVIPGSALILLLYLLITLL ALPSLLIFYLA HALEKLMNDITS
Sbjct: 181 FLLVVIFLLIVVFVIPGSALILLLYLLITLLLALPSLLIFYLALHALEKLMNDITS 236

[Close]

BLAST of Cucsat.G10259 vs. NCBI nr
Match: KAG7029990.1 (hypothetical protein SDJN02_08334, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 383 bits (984), Expect = 1.61e-132
Identity = 203/249 (81.53%), Postives = 210/249 (84.34%), Query Frame = 0


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MWKLASNA AGIRSK NS VSKQ FWECSDDE CSE SRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGH+LC+NCVLGLQG VLKLATRQIRIPI ISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFSLPSGTGT---------GTVT----SERRRLFF 180
           LLWMVES NGNEGKLDH FN DN P+FSLP              G V+      RRRLF 
Sbjct: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDANASQRHSFSDGRVSRHGIERRRRLFS 180

Query: 181 YNHLDFVVHLIFKFLLLVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLAFHAL 236
           Y HLD V+HLIFKFLL VIFVLIVVFVIPGSALILLLYLLIT LFALPSLLIFY++ HAL
Sbjct: 181 YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240

[Close]

BLAST of Cucsat.G10259 vs. NCBI nr
Match: KAG6599045.1 (hypothetical protein SDJN03_08823, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 383 bits (983), Expect = 2.29e-132
Identity = 203/249 (81.53%), Postives = 210/249 (84.34%), Query Frame = 0


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MWKLASNA AGIRSK NS VSKQ FWECSDDE CSE SRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGH+LC+NCVLGLQG VLKLATRQIRIPI ISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFSLPSGTGT---------GTVT----SERRRLFF 180
           LLWMVES NGNEGKLDH FN DN P+FSLP              G V+      RRRLF 
Sbjct: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFSDGRVSRHGIERRRRLFS 180

Query: 181 YNHLDFVVHLIFKFLLLVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLAFHAL 236
           Y HLD V+HLIFKFLL VIFVLIVVFVIPGSALILLLYLLIT LFALPSLLIFY++ HAL
Sbjct: 181 YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240

[Close]

BLAST of Cucsat.G10259 vs. ExPASy TrEMBL
Match: A0A1S3CPH8 (uncharacterized protein LOC103503329 OS=Cucumis melo OX=3656 GN=LOC103503329 PE=4 SV=1)

HSP 1 Score: 424 bits (1091), Expect = 2.11e-149
Identity = 220/236 (93.22%), Postives = 225/236 (95.34%), Query Frame = 0


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MWKLASNAIAGIRSKKNSDV KQVFWECSDDE CSEASRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAIAGIRSKKNSDVPKQVFWECSDDEVCSEASRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHSLCKNCVLGLQGSVLKLATRQ+RIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQMRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFSLPSGTGTGTVTSERRRLFFYNHLDFVVHLIFK 180
           LLWMVESFNGNEGKLDHSFNSDN  +FSLPSGT    VTSERRRLFFYNHLD V+HL+FK
Sbjct: 121 LLWMVESFNGNEGKLDHSFNSDNQSVFSLPSGT----VTSERRRLFFYNHLDCVIHLVFK 180

Query: 181 FLLLVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLAFHALEKLMNDITS 236
           FLL VIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLA HAL+KLMNDITS
Sbjct: 181 FLLTVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLALHALDKLMNDITS 232

[Close]

BLAST of Cucsat.G10259 vs. ExPASy TrEMBL
Match: A0A5A7TGX0 (Zf-RING_LisH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00120 PE=4 SV=1)

HSP 1 Score: 424 bits (1091), Expect = 2.11e-149
Identity = 220/236 (93.22%), Postives = 225/236 (95.34%), Query Frame = 0


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MWKLASNAIAGIRSKKNSDV KQVFWECSDDE CSEASRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAIAGIRSKKNSDVPKQVFWECSDDEVCSEASRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHSLCKNCVLGLQGSVLKLATRQ+RIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQMRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFSLPSGTGTGTVTSERRRLFFYNHLDFVVHLIFK 180
           LLWMVESFNGNEGKLDHSFNSDN  +FSLPSGT    VTSERRRLFFYNHLD V+HL+FK
Sbjct: 121 LLWMVESFNGNEGKLDHSFNSDNQSVFSLPSGT----VTSERRRLFFYNHLDCVIHLVFK 180

Query: 181 FLLLVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLAFHALEKLMNDITS 236
           FLL VIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLA HAL+KLMNDITS
Sbjct: 181 FLLTVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLALHALDKLMNDITS 232

[Close]

BLAST of Cucsat.G10259 vs. ExPASy TrEMBL
Match: A0A6J1G3L5 (uncharacterized protein LOC111450453 OS=Cucurbita moschata OX=3662 GN=LOC111450453 PE=4 SV=1)

HSP 1 Score: 381 bits (979), Expect = 4.50e-132
Identity = 202/249 (81.12%), Postives = 210/249 (84.34%), Query Frame = 0


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MWKLASNA AGIRSK NS VSKQ FWECSDDE CSE SRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGH+LC+NCVLGLQG VLKLATRQIRIPI ISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFSLPSGTGT---------GTVT----SERRRLFF 180
           LLWMVES NGNEGKLDH FN DN P+FSLP              G V+      RRRLF 
Sbjct: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFSDGRVSRHGIERRRRLFS 180

Query: 181 YNHLDFVVHLIFKFLLLVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLAFHAL 236
           Y HLD V+HLIFKFLL VIFVLIVVFVIPGSALILLLYLLIT LFALPSLLIFY++ HAL
Sbjct: 181 YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240

[Close]

BLAST of Cucsat.G10259 vs. ExPASy TrEMBL
Match: A0A6J1KAL8 (uncharacterized protein LOC111493743 OS=Cucurbita maxima OX=3661 GN=LOC111493743 PE=4 SV=1)

HSP 1 Score: 377 bits (967), Expect = 3.03e-130
Identity = 202/249 (81.12%), Postives = 210/249 (84.34%), Query Frame = 0


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MWKLASNA AGIRSK NS VSKQ FWECSDDE CSE SRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGH+LC+NCVLGLQG VLKLATRQIRIPI ISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFSLPSGTGT---------GTVTS---ERRR-LFF 180
           LLWMVES NGNEGKLDH FN DN P+FSLP              G V     ERR  LF 
Sbjct: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFSDGRVNRHGIERRPWLFS 180

Query: 181 YNHLDFVVHLIFKFLLLVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLAFHAL 236
           Y HLD ++HLIFKFLL+VIFVLIVVFVIPGSALILLLYLLIT LFALPSLLIFY++ HAL
Sbjct: 181 YEHLDCLIHLIFKFLLVVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240

[Close]

BLAST of Cucsat.G10259 vs. ExPASy TrEMBL
Match: A0A6J1D940 (uncharacterized protein LOC111018502 OS=Momordica charantia OX=3673 GN=LOC111018502 PE=4 SV=1)

HSP 1 Score: 376 bits (966), Expect = 4.15e-130
Identity = 198/250 (79.20%), Postives = 217/250 (86.80%), Query Frame = 0


Query: 1   MWKLASNAIAGIRSKKNSDVSKQVFWECSDDEACSEASRDEELECPICWESFNIVENVPY 60
           MWKLASNAIAGIR +KNS VSKQVFWECSDDE CSEASRDE LECPICWESFNIVEN+PY
Sbjct: 1   MWKLASNAIAGIRLRKNSVVSKQVFWECSDDEVCSEASRDEGLECPICWESFNIVENIPY 60

Query: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQIRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGH+LCKNCVLGLQGSVLK+ATRQIR+PI ISCPWCHQLSLR+VYKGNLKFPSKNFF
Sbjct: 61  VLWCGHTLCKNCVLGLQGSVLKVATRQIRVPICISCPWCHQLSLRLVYKGNLKFPSKNFF 120

Query: 121 LLWMVESFNGNEGKLDHSFNSDNHPLFSLPSGTGTGTVTSER--------------RRLF 180
           LLWMVESFN +EGKLDHSFN DN P+F LPS T T  V+SER              R LF
Sbjct: 121 LLWMVESFNDDEGKLDHSFNGDNQPVFPLPSDTET--VSSERLDSHVSRHGIGRRRRWLF 180

Query: 181 FYNHLDFVVHLIFKFLLLVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLAFHA 236
            Y +LD+++HLI KFLL+VIF+LIVVFVIPGSA+ILLLYLLIT LFALPSLL+FYLA HA
Sbjct: 181 VYKYLDWLIHLISKFLLVVIFLLIVVFVIPGSAVILLLYLLITFLFALPSLLVFYLALHA 240

The following BLAST results are available for this feature:

BLAST of Cucsat.G10259 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9H0X6	2.4e-05	39.13	RING finger protein 208 OS=Homo sapiens OX=9606 GN=RNF208 PE=1 SV=2	[more]
Q8K0W3	9.1e-05	39.34	RING finger protein 208 OS=Mus musculus OX=10090 GN=Rnf208 PE=1 SV=2	[more]
Q96D59	2.7e-04	36.36	E3 ubiquitin-protein ligase RNF183 OS=Homo sapiens OX=9606 GN=RNF183 PE=1 SV=2	[more]
Q13049	2.7e-04	34.92	E3 ubiquitin-protein ligase TRIM32 OS=Homo sapiens OX=9606 GN=TRIM32 PE=1 SV=2	[more]
Q8CH72	2.7e-04	34.92	E3 ubiquitin-protein ligase TRIM32 OS=Mus musculus OX=10090 GN=Trim32 PE=1 SV=2	[more]

BLAST of Cucsat.G10259 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655300.2	4.77e-163	100.00	uncharacterized protein LOC101218619 [Cucumis sativus] >XP_031741070.1 uncharact...	[more]
XP_008465708.1	4.37e-149	93.22	PREDICTED: uncharacterized protein LOC103503329 [Cucumis melo] >XP_008465709.1 P...	[more]
XP_038890517.1	5.63e-146	90.68	uncharacterized protein LOC120080047 [Benincasa hispida]	[more]
KAG7029990.1	1.61e-132	81.53	hypothetical protein SDJN02_08334, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6599045.1	2.29e-132	81.53	hypothetical protein SDJN03_08823, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cucsat.G10259 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CPH8	2.11e-149	93.22	uncharacterized protein LOC103503329 OS=Cucumis melo OX=3656 GN=LOC103503329 PE=...	[more]
A0A5A7TGX0	2.11e-149	93.22	Zf-RING_LisH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1G3L5	4.50e-132	81.12	uncharacterized protein LOC111450453 OS=Cucurbita moschata OX=3662 GN=LOC1114504...	[more]
A0A6J1KAL8	3.03e-130	81.12	uncharacterized protein LOC111493743 OS=Cucurbita maxima OX=3661 GN=LOC111493743...	[more]
A0A6J1D940	4.15e-130	79.20	uncharacterized protein LOC111018502 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 33..137 e-value: 7.0E-13 score: 49.9
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 45..73 e-value: 6.2E-8 score: 32.5
None	No IPR available	PANTHER	PTHR46616:SF1	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 1..149
None	No IPR available	PANTHER	PTHR46616	UBIQUITIN-PROTEIN LIGASE	coord: 1..149
None	No IPR available	PANTHER	PTHR46616:SF1	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 155..236
None	No IPR available	PANTHER	PTHR46616	UBIQUITIN-PROTEIN LIGASE	coord: 155..236
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 40..102
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 64..73
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 45..100 score: 9.951762

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G10259.T1	Cucsat.G10259.T1	mRNA
Cucsat.G10259.T2	Cucsat.G10259.T2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity