Cucsat.G10062 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G10062
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	10 kDa chaperonin-like
Location	ctg1673: 4289371 .. 4290167 (+)
RNA-Seq Expression	Cucsat.G10062
Synteny	Cucsat.G10062

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCCCCTGTCCTAGAACCTTCTACGCCTTTCTATTTCTTCCGTTAAAGCAACGCCCACTCTCCATCTTCTTCATTGCGCCTGAACCCAAGAACCCTAATTCTTCCACCACACACTTATGGCGAGGCGCTTAATTCCATCTCTTAATCGTGTCTTGATCGAGAAAATCGTTCCTCCTTCCAAAACCTCTGCTGGCATTCTTCTCCCCGAGAGCTCCTCCAAGGTATCTCCAATGTACCTTTCATTCTCTCTGTTTTTTCATTTCGGTTTCTGTTTCTTCTCTTTGATTTCATTTCTACTGGGGTTTGCACCCTTTAGTTGAACTCCGGCAAGGTGATTGCGGTGGGTCCTGGTGCACGGGATGTTAGCGGGAATCTGGTTCCGGTCTGTGTGAAAGAAGGTGATACCGTTCTTTTGCCTGAATATGGAGGCACGTCGGTGAAGCTCGGGGAGAAAGAGTATGCTTCTACTTTTCTTGCTCTGTTTGTAGAAACGATGGTCTTTGATTCAAATTTTCCTGCACTGTTTATACCTACTGTATTTGCCTCCTTAGTTCATTGCTATGATCCCAAATTGAACGATTTTATAATTTTAAAACGAGACTGGAAGATTCAGGACTATGTGCGAATTTGAGATATCAATCTTGTTAGAAATTGCTGTTTATCTCTGTCAAATTCATACTAGTCTAAGTAGACTAAAGTTGGATGTAAATATTGATTTCCTATTCGGTTTCATGATTTTGTTTTGATTTTTCTTTGGTGGGGTTTATCTGCAGGTTCCATTTGTTTAGAGATGAAG

Coding sequence (CDS)

ATGGCGAGGCGCTTAATTCCATCTCTTAATCGTGTCTTGATCGAGAAAATCGTTCCTCCTTCCAAAACCTCTGCTGGCATTCTTCTCCCCGAGAGCTCCTCCAAGTTGAACTCCGGCAAGGTGATTGCGGTGGGTCCTGGTGCACGGGATGTTAGCGGGAATCTGGTTCCGGTCTGTGTGAAAGAAGGTGATACCGTTCTTTTGCCTGAATATGGAGGCACGTCGGTGAAGCTCGGGGAGAAAGAGTATGCTTCTACTTTTCTTGCTCTGTTTGTAGAAACGATGGTCTTTGATTCAAATTTTCCTGCACTGTTTATACCTACTGTATTTGCCTCCTTAGTTCATTGCTATGATCCCAAATTGAACGATTTTATAATTTTAAAACGAGACTGGAAGATTCAGGACTATGTGCGAATTTGA

Protein sequence

MARRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDVSGNLVPVCVKEGDTVLLPEYGGTSVKLGEKEYASTFLALFVETMVFDSNFPALFIPTVFASLVHCYDPKLNDFIILKRDWKIQDYVRI

Homology

[Close]

BLAST of Cucsat.G10062 vs. ExPASy Swiss-Prot
Match: P34893 (10 kDa chaperonin, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CPN10 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.1e-29
Identity = 60/83 (72.29%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 1  MARRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDVSGNLVPVCV 60
          M +RLIP+ NR+L+++++ P+KT +GILLPE SSKLNSGKVIAVGPG+RD  G L+PV V
Sbjct: 1  MMKRLIPTFNRILVQRVIQPAKTESGILLPEKSSKLNSGKVIAVGPGSRDKDGKLIPVSV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEY 84
          KEGDTVLLPEYGGT VKLGE EY
Sbjct: 61 KEGDTVLLPEYGGTQVKLGENEY 83

[Close]

BLAST of Cucsat.G10062 vs. ExPASy Swiss-Prot
Match: Q96539 (10 kDa chaperonin OS=Brassica napus OX=3708 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.0e-29
Identity = 60/83 (72.29%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 1  MARRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDVSGNLVPVCV 60
          M +RLIP+ NR+L++ ++ P+KT +GILLPE +SKLNSGKVIAVGPG+RD  G L+PV V
Sbjct: 1  MMKRLIPTFNRILVQGVIQPAKTESGILLPEKASKLNSGKVIAVGPGSRDKDGKLIPVSV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEY 84
          KEGDTVLLPEYGGT VKLGEKEY
Sbjct: 61 KEGDTVLLPEYGGTQVKLGEKEY 83

[Close]

BLAST of Cucsat.G10062 vs. ExPASy Swiss-Prot
Match: O59804 (10 kDa heat shock protein, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=hsp10 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-14
Identity = 39/84 (46.43%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 2  ARRLIPSLNRVLIEKIVPPSKTSAGILLPESS-SKLNSGKVIAVGPGARDVSGNLVPVCV 61
          A+ ++P L+R+L+++I   +KT++GI LPE S  KL+ G+VI+VG G  +  G L    V
Sbjct: 8  AKSIVPLLDRILVQRIKADTKTASGIFLPEKSVEKLSEGRVISVGKGGYNKEGKLAQPSV 67

Query: 62 KEGDTVLLPEYGGTSVKLGEKEYA 85
            GD VLLP YGG+++K+GE+EY+
Sbjct: 68 AVGDRVLLPAYGGSNIKVGEEEYS 91

[Close]

BLAST of Cucsat.G10062 vs. ExPASy Swiss-Prot
Match: P38910 (10 kDa heat shock protein, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HSP10 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.7e-14
Identity = 38/87 (43.68%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 2  ARRLIPSLNRVLIEKIVPPSKTSAGILLPESS-SKLNSGKVIAVGPGARDVSGNLVPVCV 61
          A+ ++P ++RVL+++I   +KT++G+ LPE +  KLN  +V+AVGPG  D +GN V   V
Sbjct: 8  AKSIVPLMDRVLVQRIKAQAKTASGLYLPEKNVEKLNQAEVVAVGPGFTDANGNKVVPQV 67

Query: 62 KEGDTVLLPEYGGTSVKLGEKEYASTF 88
          K GD VL+P++GG+++KLG  +    F
Sbjct: 68 KVGDQVLIPQFGGSTIKLGNDDEVILF 94

[Close]

BLAST of Cucsat.G10062 vs. ExPASy Swiss-Prot
Match: Q64433 (10 kDa heat shock protein, mitochondrial OS=Mus musculus OX=10090 GN=Hspe1 PE=1 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-13
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 3  RRLIPSLNRVLIEKIVPPSKTSAGILLPE-SSSKLNSGKVIAVGPGARDVSGNLVPVCVK 62
          R+ +P  +RVL+E+    + T  GI+LPE S  K+    V+AVG G +  SG + PV VK
Sbjct: 7  RKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGGKGKSGEIEPVSVK 66

Query: 63 EGDTVLLPEYGGTSVKLGEKEY 84
           GD VLLPEYGGT V L +K+Y
Sbjct: 67 VGDKVLLPEYGGTKVVLDDKDY 88

[Close]

BLAST of Cucsat.G10062 vs. NCBI nr
Match: XP_004150598.1 (10 kDa chaperonin, mitochondrial [Cucumis sativus] >KAE8648605.1 hypothetical protein Csa_007995 [Cucumis sativus])

HSP 1 Score: 160 bits (406), Expect = 2.30e-48
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MARRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDVSGNLVPVCV 60
          MARRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDVSGNLVPVCV
Sbjct: 1  MARRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDVSGNLVPVCV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEY 83
          KEGDTVLLPEYGGTSVKLGEKE+
Sbjct: 61 KEGDTVLLPEYGGTSVKLGEKEF 83

[Close]

BLAST of Cucsat.G10062 vs. NCBI nr
Match: XP_008467132.1 (PREDICTED: 10 kDa chaperonin-like [Cucumis melo] >KAA0046322.1 10 kDa chaperonin-like [Cucumis melo var. makuwa] >TYK30486.1 10 kDa chaperonin-like [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (399), Expect = 2.60e-47
Identity = 79/83 (95.18%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MARRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDVSGNLVPVCV 60
          MA+RLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARD++GNLVPVCV
Sbjct: 1  MAKRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDINGNLVPVCV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEY 83
          KEGDTVLLPEYGGTSVKLGEKE+
Sbjct: 61 KEGDTVLLPEYGGTSVKLGEKEF 83

[Close]

BLAST of Cucsat.G10062 vs. NCBI nr
Match: XP_038907054.1 (10 kDa chaperonin, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 151 bits (381), Expect = 1.43e-44
Identity = 75/83 (90.36%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MARRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDVSGNLVPVCV 60
          MA+RLIPSLNRVLIEKI+PPSKTSAGILLPESS+KLNSGKVIAVGPGARD SGNL+PVCV
Sbjct: 1  MAKRLIPSLNRVLIEKILPPSKTSAGILLPESSTKLNSGKVIAVGPGARDNSGNLIPVCV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEY 83
          KEGDTVLLPEYGGT VKLG+KE+
Sbjct: 61 KEGDTVLLPEYGGTPVKLGDKEF 83

[Close]

BLAST of Cucsat.G10062 vs. NCBI nr
Match: KAF3432182.1 (hypothetical protein FNV43_RR26921 [Rhamnella rubrinervis])

HSP 1 Score: 150 bits (380), Expect = 2.03e-44
Identity = 73/83 (87.95%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MARRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDVSGNLVPVCV 60
          MARRLIP+LNRVL+EKI+PPSKT+AGILLPESS+KLNSGKV+AVGPGARD SGN+VPVCV
Sbjct: 1  MARRLIPTLNRVLVEKIIPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRSGNVVPVCV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEY 83
          KEGDTVLLPEYGGT VKLGEKE+
Sbjct: 61 KEGDTVLLPEYGGTQVKLGEKEF 83

[Close]

BLAST of Cucsat.G10062 vs. NCBI nr
Match: KAF7808744.1 (10 kDa chaperonin, mitochondrial-like [Senna tora])

HSP 1 Score: 148 bits (374), Expect = 1.94e-43
Identity = 77/93 (82.80%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 1  MARRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDVSGNLVPVCV 60
          MARRLIPSLNRVLIEKIVPPSKT+AGILLPE +SKLNSGKVIAVGPGARD +GNL+PV V
Sbjct: 1  MARRLIPSLNRVLIEKIVPPSKTTAGILLPEKTSKLNSGKVIAVGPGARDKAGNLIPVSV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEYASTFLALFVE 93
          KEGDTVLLPEYGGT VKL +KEY    L LF E
Sbjct: 61 KEGDTVLLPEYGGTQVKLDDKEYVVMTLHLFRE 93

[Close]

BLAST of Cucsat.G10062 vs. ExPASy TrEMBL
Match: A0A0A0KPH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570400 PE=3 SV=1)

HSP 1 Score: 210 bits (534), Expect = 6.72e-67
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MARRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDVSGNLVPVCV 60
           MARRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDVSGNLVPVCV
Sbjct: 1   MARRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDVSGNLVPVCV 60

Query: 61  KEGDTVLLPEYGGTSVKLGEKEYASTFLALFVETMVFDSNFPALFIPTV 109
           KEGDTVLLPEYGGTSVKLGEKEYASTFLALFVETMVFDSNFPALFIPT+
Sbjct: 61  KEGDTVLLPEYGGTSVKLGEKEYASTFLALFVETMVFDSNFPALFIPTI 109

[Close]

BLAST of Cucsat.G10062 vs. ExPASy TrEMBL
Match: A0A5D3E3M3 (10 kDa chaperonin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00290 PE=3 SV=1)

HSP 1 Score: 158 bits (399), Expect = 1.26e-47
Identity = 79/83 (95.18%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MARRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDVSGNLVPVCV 60
          MA+RLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARD++GNLVPVCV
Sbjct: 1  MAKRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDINGNLVPVCV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEY 83
          KEGDTVLLPEYGGTSVKLGEKE+
Sbjct: 61 KEGDTVLLPEYGGTSVKLGEKEF 83

[Close]

BLAST of Cucsat.G10062 vs. ExPASy TrEMBL
Match: A0A1S3CU36 (10 kDa chaperonin-like OS=Cucumis melo OX=3656 GN=LOC103504560 PE=3 SV=1)

HSP 1 Score: 158 bits (399), Expect = 1.26e-47
Identity = 79/83 (95.18%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MARRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDVSGNLVPVCV 60
          MA+RLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARD++GNLVPVCV
Sbjct: 1  MAKRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDINGNLVPVCV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEY 83
          KEGDTVLLPEYGGTSVKLGEKE+
Sbjct: 61 KEGDTVLLPEYGGTSVKLGEKEF 83

[Close]

BLAST of Cucsat.G10062 vs. ExPASy TrEMBL
Match: A0A540KN09 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_038935 PE=3 SV=1)

HSP 1 Score: 147 bits (370), Expect = 3.08e-43
Identity = 71/83 (85.54%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MARRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDVSGNLVPVCV 60
          MARRLIP+LNRVLIEKI+PPSKT+AGILLPESS+KLNSGKV+AVGPGA+D +GNL+PV V
Sbjct: 1  MARRLIPTLNRVLIEKIIPPSKTTAGILLPESSTKLNSGKVVAVGPGAKDKAGNLIPVAV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEY 83
          KEGDTVLLPEYGGT VKLG+KEY
Sbjct: 61 KEGDTVLLPEYGGTQVKLGDKEY 83

[Close]

BLAST of Cucsat.G10062 vs. ExPASy TrEMBL
Match: M0U922 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103973965 PE=3 SV=1)

HSP 1 Score: 147 bits (370), Expect = 3.27e-43
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MARRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDVSGNLVPVCV 60
          MARRLIPSLNRVL+EKI+PPSKTSAGILLPE ++KLNSGKVIA+GPGARD  G L+PVCV
Sbjct: 1  MARRLIPSLNRVLVEKIIPPSKTSAGILLPEKTTKLNSGKVIAIGPGARDRDGKLIPVCV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEY 83
           EGDTVLLPEYGGT VKLGEKEY
Sbjct: 61 SEGDTVLLPEYGGTEVKLGEKEY 83

The following BLAST results are available for this feature:

BLAST of Cucsat.G10062 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P34893	4.1e-29	72.29	10 kDa chaperonin, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CPN10 PE=1 S...	[more]
Q96539	7.0e-29	72.29	10 kDa chaperonin OS=Brassica napus OX=3708 PE=3 SV=1	[more]
O59804	2.2e-14	46.43	10 kDa heat shock protein, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
P38910	3.7e-14	43.68	10 kDa heat shock protein, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q64433	1.8e-13	48.78	10 kDa heat shock protein, mitochondrial OS=Mus musculus OX=10090 GN=Hspe1 PE=1 ...	[more]

BLAST of Cucsat.G10062 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150598.1	2.30e-48	98.80	10 kDa chaperonin, mitochondrial [Cucumis sativus] >KAE8648605.1 hypothetical pr...	[more]
XP_008467132.1	2.60e-47	95.18	PREDICTED: 10 kDa chaperonin-like [Cucumis melo] >KAA0046322.1 10 kDa chaperonin...	[more]
XP_038907054.1	1.43e-44	90.36	10 kDa chaperonin, mitochondrial-like [Benincasa hispida]	[more]
KAF3432182.1	2.03e-44	87.95	hypothetical protein FNV43_RR26921 [Rhamnella rubrinervis]	[more]
KAF7808744.1	1.94e-43	82.80	10 kDa chaperonin, mitochondrial-like [Senna tora]	[more]

BLAST of Cucsat.G10062 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPH4	6.72e-67	99.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570400 PE=3 SV=1	[more]
A0A5D3E3M3	1.26e-47	95.18	10 kDa chaperonin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]
A0A1S3CU36	1.26e-47	95.18	10 kDa chaperonin-like OS=Cucumis melo OX=3656 GN=LOC103504560 PE=3 SV=1	[more]
A0A540KN09	3.08e-43	85.54	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_038935 PE=3 SV=1	[more]
M0U922	3.27e-43	85.54	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103973...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020818	GroES chaperonin family	PRINTS	PR00297	CHAPERONIN10	coord: 26..47 score: 39.3 coord: 61..73 score: 52.0 coord: 5..20 score: 26.17
IPR020818	GroES chaperonin family	SMART	SM00883	Cpn10_2	coord: 4..91 e-value: 3.5E-20 score: 83.0
IPR020818	GroES chaperonin family	PFAM	PF00166	Cpn10	coord: 6..84 e-value: 2.3E-19 score: 69.2
IPR020818	GroES chaperonin family	PANTHER	PTHR10772	10 KDA HEAT SHOCK PROTEIN	coord: 1..85
IPR020818	GroES chaperonin family	CDD	cd00320	cpn10	coord: 4..83 e-value: 5.26475E-30 score: 102.2
IPR037124	GroES chaperonin superfamily	GENE3D	2.30.33.40	GroES chaperonin	coord: 1..91 e-value: 1.4E-23 score: 84.9
None	No IPR available	PANTHER	PTHR10772:SF37	GROES-LIKE FAMILY PROTEIN	coord: 1..85
IPR011032	GroES-like superfamily	SUPERFAMILY	50129	GroES-like	coord: 4..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G10062.T4	Cucsat.G10062.T4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity