Csor.00g314270 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g314270
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	50S ribosomal protein L23, chloroplastic
Location	Csor_Chr15: 1903308 .. 1904470 (+)
RNA-Seq Expression	Csor.00g314270
Synteny	Csor.00g314270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCGAAAGGTTAGTTTATCAATTTATACATCGAACAGTTATCGATTACTCGTTTTTATAAAAATCTCTTGCATATATAGTTGCATAGGACATTCAAATTATTTTCAGTGCTACATCATTTCTCATGACTGCCGTTCGATATTTATTCTGTACGCGATTTGGATCTCTAGACTCAGTTGTTGAAAACATTTGAGCTTCGAATTTAAAAGAAGCAGATAATTGCAAAATTGAAACGACAAGATCTGAATAGCCTGTTTAGAATTTAGTCCGCGGGCTACAAACTTCATAGAATCGCACGATCGAAAGATTTGCTTGAATCACTCTGCTTCACTACTTTTTCTTTCACCGTTGTCGAAAGTAGAAAAATGGTGATTAGAAGTTTATTGTTAGTGTGAATATCATTTTTACAAACTATGTGAGAATGCTCGTAGGATATATAGAAGATAAGCATTGACAATTTACACATATAGGAAGGATTAGTTTTGAGTGAATAAACGAGCCAGGCTTGATATTTCTTTTCCCCCTCAGCTGACCTCACCAAAAAGGCTGACCCTAAGGCACAAGCCTTGAAAACTGCCAAGGCAGTAAAATCGGGTCCAACATTTAAGAAGAAAGCGAAGAAAATCAGAACGTCTGTCACATTTCACCGTCCAAAGACATTGAAGAAGGAAAGAAATCCGAAGTATCCACGAATTAGTGCTACTCCAAGGAACAAGTTGGACCAGTATCAGATTCTTAAATACCCTTTGACTACTGAGTCTGCAATGAAGAAGATCGAGGACAATAATACTTTGGTTTTCATTGTGGACATTCGTGCTGATAAGAAGAAGATCAAGGATGCCGTGAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACGTTGATCAGGTAAAATCTTAATCAAACATTCCTATGGTTTCTTCTTAGAATATTGAGGTGGGTTATCCATCATCTTGTGGAAGTTTCTTGTTATCATTCTTAGAGCCGACTTATCAATGAAATTAATGGCTGCAATGATTATCATAAAATGTTCACACTGACAACGTTGCTTGCTTTATCCAATATTGCAGGCCTGATGGAACCAAGAAGGCATATGTAAGGCTGACTCCCGATTATGATGCTTTGGATGTTGCAAACAAGATTGGAATCATCTAA

mRNA sequence

ATGGCTCCGAAAGCTGACCTCACCAAAAAGGCTGACCCTAAGGCACAAGCCTTGAAAACTGCCAAGGCAGTAAAATCGGGTCCAACATTTAAGAAGAAAGCGAAGAAAATCAGAACGTCTGTCACATTTCACCGTCCAAAGACATTGAAGAAGGAAAGAAATCCGAAGTATCCACGAATTAGTGCTACTCCAAGGAACAAGTTGGACCAGTATCAGATTCTTAAATACCCTTTGACTACTGAGTCTGCAATGAAGAAGATCGAGGACAATAATACTTTGGTTTTCATTGTGGACATTCGTGCTGATAAGAAGAAGATCAAGGATGCCGTGAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACGTTGATCAGGCCTGATGGAACCAAGAAGGCATATGTAAGGCTGACTCCCGATTATGATGCTTTGGATGTTGCAAACAAGATTGGAATCATCTAA

Coding sequence (CDS)

ATGGCTCCGAAAGCTGACCTCACCAAAAAGGCTGACCCTAAGGCACAAGCCTTGAAAACTGCCAAGGCAGTAAAATCGGGTCCAACATTTAAGAAGAAAGCGAAGAAAATCAGAACGTCTGTCACATTTCACCGTCCAAAGACATTGAAGAAGGAAAGAAATCCGAAGTATCCACGAATTAGTGCTACTCCAAGGAACAAGTTGGACCAGTATCAGATTCTTAAATACCCTTTGACTACTGAGTCTGCAATGAAGAAGATCGAGGACAATAATACTTTGGTTTTCATTGTGGACATTCGTGCTGATAAGAAGAAGATCAAGGATGCCGTGAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACGTTGATCAGGCCTGATGGAACCAAGAAGGCATATGTAAGGCTGACTCCCGATTATGATGCTTTGGATGTTGCAAACAAGATTGGAATCATCTAA

Protein sequence

MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Homology

[Close]

BLAST of Csor.00g314270 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.9e-68
Identity = 140/154 (90.91%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MAP-KADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D+TKK+D KAQALKTAKAVKSG T  KK KKIRTSVTFHRP+TL K+RNPKYPR
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Csor.00g314270 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 4.2e-67
Identity = 138/154 (89.61%), Postives = 144/154 (93.51%), Query Frame = 0


Query: 1   MAP-KADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           MAP KAD +KK+DPKAQA K AKAVKSG T KKK++KIRT VTFHRPKTLKK+RNPKYPR
Sbjct: 1   MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA  RNKLDQY ILKYPLTTESAMKKIEDNNTLVFIVDI+ADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Csor.00g314270 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 254.6 bits (649), Expect = 7.1e-67
Identity = 138/154 (89.61%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MAP-KADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Csor.00g314270 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.2e-66
Identity = 138/154 (89.61%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MAPKADLTKKADPKAQALKTAKAVKSG-PTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           MAP A + KK D KAQALK AKAVKSG  T +KKAKKIRTSVTFHRPKTLKK+RNPKYPR
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

[Close]

BLAST of Csor.00g314270 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.1e-66
Identity = 137/154 (88.96%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MAP-KADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Csor.00g314270 vs. NCBI nr
Match: XP_022939581.1 (60S ribosomal protein L23a [Cucurbita moschata] >KAG6578722.1 60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016253.1 60S ribosomal protein L23a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 289 bits (740), Expect = 3.02e-98
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Csor.00g314270 vs. NCBI nr
Match: XP_022993268.1 (60S ribosomal protein L23a-like [Cucurbita maxima] >XP_023551144.1 60S ribosomal protein L23a [Cucurbita pepo subsp. pepo])

HSP 1 Score: 288 bits (738), Expect = 6.09e-98
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD+TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Csor.00g314270 vs. NCBI nr
Match: XP_008463516.1 (PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal protein L23a [Cucumis melo var. makuwa])

HSP 1 Score: 285 bits (730), Expect = 1.01e-96
Identity = 151/153 (98.69%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Csor.00g314270 vs. NCBI nr
Match: XP_022154290.1 (60S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal protein L23a [Momordica charantia])

HSP 1 Score: 285 bits (730), Expect = 1.01e-96
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Csor.00g314270 vs. NCBI nr
Match: XP_022995723.1 (60S ribosomal protein L23a [Cucurbita maxima])

HSP 1 Score: 284 bits (727), Expect = 2.90e-96
Identity = 150/153 (98.04%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD +KKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Csor.00g314270 vs. ExPASy TrEMBL
Match: A0A6J1FGB6 (50S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445434 PE=3 SV=1)

HSP 1 Score: 289 bits (740), Expect = 1.46e-98
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Csor.00g314270 vs. ExPASy TrEMBL
Match: A0A6J1K1Q8 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489334 PE=3 SV=1)

HSP 1 Score: 288 bits (738), Expect = 2.95e-98
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD+TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Csor.00g314270 vs. ExPASy TrEMBL
Match: A0A6J1DJ76 (50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021582 PE=3 SV=1)

HSP 1 Score: 285 bits (730), Expect = 4.89e-97
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Csor.00g314270 vs. ExPASy TrEMBL
Match: A0A5D3C5W3 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002640 PE=3 SV=1)

HSP 1 Score: 285 bits (730), Expect = 4.89e-97
Identity = 151/153 (98.69%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Csor.00g314270 vs. ExPASy TrEMBL
Match: A0A1S3CJE6 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501656 PE=3 SV=1)

HSP 1 Score: 285 bits (730), Expect = 4.89e-97
Identity = 151/153 (98.69%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Csor.00g314270 vs. TAIR 10
Match: AT2G39460.1 (ribosomal protein L23AA )

HSP 1 Score: 254.6 bits (649), Expect = 5.0e-68
Identity = 138/154 (89.61%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MAP-KADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Csor.00g314270 vs. TAIR 10
Match: AT2G39460.2 (ribosomal protein L23AA )

HSP 1 Score: 254.6 bits (649), Expect = 5.0e-68
Identity = 138/154 (89.61%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MAP-KADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Csor.00g314270 vs. TAIR 10
Match: AT3G55280.1 (ribosomal protein L23AB )

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-67
Identity = 137/154 (88.96%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MAP-KADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Csor.00g314270 vs. TAIR 10
Match: AT3G55280.2 (ribosomal protein L23AB )

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-67
Identity = 137/154 (88.96%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MAP-KADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Csor.00g314270 vs. TAIR 10
Match: AT3G55280.3 (ribosomal protein L23AB )

HSP 1 Score: 241.9 bits (616), Expect = 3.4e-64
Identity = 133/154 (86.36%), Postives = 137/154 (88.96%), Query Frame = 0


Query: 1   MAP-KADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG        KIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQI------KIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 148

The following BLAST results are available for this feature:

BLAST of Csor.00g314270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AT35	2.9e-68	90.91	60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1	[more]
Q07761	4.2e-67	89.61	60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1	[more]
Q8LD46	7.1e-67	89.61	60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=...	[more]
O22644	1.2e-66	89.61	60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1	[more]
Q9M3C3	2.1e-66	88.96	60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=...	[more]

BLAST of Csor.00g314270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939581.1	3.02e-98	100.00	60S ribosomal protein L23a [Cucurbita moschata] >KAG6578722.1 60S ribosomal prot...	[more]
XP_022993268.1	6.09e-98	99.35	60S ribosomal protein L23a-like [Cucurbita maxima] >XP_023551144.1 60S ribosomal...	[more]
XP_008463516.1	1.01e-96	98.69	PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal p...	[more]
XP_022154290.1	1.01e-96	98.69	60S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal p...	[more]
XP_022995723.1	2.90e-96	98.04	60S ribosomal protein L23a [Cucurbita maxima]	[more]

BLAST of Csor.00g314270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FGB6	1.46e-98	100.00	50S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1K1Q8	2.95e-98	99.35	50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1DJ76	4.89e-97	98.69	50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5D3C5W3	4.89e-97	98.69	50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CJE6	4.89e-97	98.69	50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501656...	[more]

BLAST of Csor.00g314270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39460.1	5.0e-68	89.61	ribosomal protein L23AA	[more]
AT2G39460.2	5.0e-68	89.61	ribosomal protein L23AA	[more]
AT3G55280.1	1.5e-67	88.96	ribosomal protein L23AB	[more]
AT3G55280.2	1.5e-67	88.96	ribosomal protein L23AB	[more]
AT3G55280.3	3.4e-64	86.36	ribosomal protein L23AB	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005633	Ribosomal protein L23/L25, N-terminal	PFAM	PF03939	Ribosomal_L23eN	coord: 14..62 e-value: 2.2E-18 score: 66.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 34..153 e-value: 3.8E-53 score: 180.7
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 73..135 e-value: 1.6E-14 score: 54.0
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 1..153
IPR013025	Ribosomal protein L25/L23	HAMAP	MF_01369_A	Ribosomal_L23_A	coord: 73..153 score: 22.356056
IPR019985	Ribosomal protein L23	TIGRFAM	TIGR03636	TIGR03636	coord: 77..153 e-value: 5.0E-29 score: 98.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	PANTHER	PTHR11620:SF78	60S RIBOSOMAL PROTEIN L23A-2	coord: 1..153
IPR001014	Ribosomal protein L23/L25, conserved site	PROSITE	PS00050	RIBOSOMAL_L23	coord: 131..146
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 71..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g314270.m01	Csor.00g314270.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome