Csor.00g313500 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g313500
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RNA exonuclease 4
Location	Csor_Chr15: 1574164 .. 1576499 (-)
RNA-Seq Expression	Csor.00g313500
Synteny	Csor.00g313500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCATTCAGCTGAGACATCTAGGTTTGATCTCCTTCTCCCTGTCTTTGTGTATTTGTTTGTGGCATTGTTTCTAAGTTTTTGACACTAAAAATGGTTGTGAAACAGGCACAAGTGCGCTGCTTGCTTCAGGCAATTCAACAAGATTGAGCATTTGGTTGATCATATGAGGACCTCTTTCCACTCACCTCATGAACCCACTTGTGCTGTTTGCAAGAAACACTGTCGTTCTCTTGATTCTCTTAGAGAACATCTCATTGGTATGTCATCGTAAGCTTTTTGAAGTTCAATAAAAGTTCGTATATAAGACCTACAGTGAGATCCCACGTTGGTTGGAGAGGAGAACGAAACATTTCATGCAAGGGTGTGGAAACCTCTCTCTAGCAGACACGTTTTAAAACCGTGAGGCTGACGACAATACGTAACGAACTAAAGCGGACAATATTGACTAGGAGTGGTCTTGGGCTGTTACAAATGGTATTAGAGCCTGTGTGCCAGCGAGGACGCTAGCCCTCAAGAGGAATGAATTATGAGATCCAATGTCAGTTGGAGAGGGAAATGAAACATTCCTTGTAAGGGTGTGGAAACCTCTCCCTAGAAAACACGTTTTAAAATCGTGAAGCTGACAGCAATACGTAACAGGCCAAAGCGGACAATATCTCCTAACAGTGGGTTTGAGCTGTTTACAAATGGTATCAGAGTTAGACACCGGACGGTGTGCCAGCGAGGAAGCTGGCACCCAGAGAGGGTGGATTATGAGATCCCACATCGGTTGGAGAGGGAAACGAAACATTCATCGTAAGAGTGTGGAAACCTCTCCCTAGTAGATGCATTTTAAAATCATGAGGCTAACGATGATACATAACGGGTCAAAACAGACAATATCTACTGGCAGTAGACTTGAACGGTTACATATACTATAATGGGTTGCGATAAATTTGCGATAAATTTAATTATATCGATACGATCATGTTGTTATCAGGGCCGCTGCCGAAGCAAGAATGCAAAAACGTCTTCGACATGCGAGGATGCAAGTTTTGCTTGGCCATCCTTGACAGTTCATACTCACAAAGGCTCCACCAAGAAAGATGCCAATTCTCGTGTGTCAATTCTGTATGAACCCTCAACTATCAGCTAATTAAACAGCATGAAATTTAGTTCTTTACCTTCAAAATCTTGAATCTTCCATTCTTTTTTGGCTGTTTTGATCAGGGGCTTCTTGCTCGTTTGGCCAACTTGGGAATTCGCGATGGTTCAACCGCCATCGACGGTGGAAGAACTCGAGGCTCCGGTCCCGTGGCGTTAGCTTGCAAATATGTAGGTGGCGGTGATGGGTCGCTGGATGTCTGTGCCAAGGTCTGCCTTATTGATGAGAGTGAAAATGTCATCTTCTATAGCTATGTCAAGCCCATAATTCCCGTTACAAATTATAGGTAAGTTATTTTTCGGGCGAATCCTTTGAAATTTAGAGACCAAATAAACCTAAAATTTTAGAATTGAATTAGAAAATTTTTATAATTTAACCAATTCGATATGTAAAAATAAAATTAGGTATGAAATGACGGGCATTCGTCCCGAACACCTTCGAGATGCAATGCCATTGAAGCAAGTTCAAAAGAAAATTCAAGACATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTGTGTGGAAGACGATCTCAAACGTCTACAAATCGGATATCCATCCATCATGATAAGGTAAATTCTTCAAACAAAAACTAAATTTATCGTGACCCATCAACTCAAAATTTTAAATTTCTTATTGAGATTCGAAGTTCTAACCTTATATCAACTTTTTTACGAAACCCTTTTAAGATCTTGACGAAGATTGCTTGGTTTCATGCACTGATCCACAGGGACATAGCAAATTATCCGCCATTGATGAAGACAAGCAAGCTATGCAATTCACTCAAGTATCTAGCTCAAGTGTATCTCGGGCAAGTACCATTTTCAATTCTAACTTCATTAAAAAACGAACACGATTTTTAAAAAATAACACACGAAATGATGATCGAGGAACGGTTATGTAATAAACGAATAATTGGTATTTGTTATTGTAGATTTGAGATTCAAAATGGAGTACAAGATCCTTATGAAGAATGTGTTGGTGGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGCATCATCCAATGGCTTCTGACCCACAAAACAAAAACAACTTTGCAGCTTGGAGGGAGAATGAGCTTGAGAGGATGAGCCCAGAACAGATGTTGGAGATTTCTAGGTCTGATTATTACTGTTGGTGCATGGATTTGAGGATTTGA

mRNA sequence

ATGGATCATTCAGCTGAGACATCTAGGCACAAGTGCGCTGCTTGCTTCAGGCAATTCAACAAGATTGAGCATTTGGTTGATCATATGAGGACCTCTTTCCACTCACCTCATGAACCCACTTGTGCTGTTTGCAAGAAACACTGTCGTTCTCTTGATTCTCTTAGAGAACATCTCATTGGGCCGCTGCCGAAGCAAGAATGCAAAAACGTCTTCGACATGCGAGGATGCAAGTTTTGCTTGGCCATCCTTGACAGTTCATACTCACAAAGGCTCCACCAAGAAAGATGCCAATTCTCGTGTGTCAATTCTGGGCTTCTTGCTCGTTTGGCCAACTTGGGAATTCGCGATGGTTCAACCGCCATCGACGGTGGAAGAACTCGAGGCTCCGGTCCCGTGGCGTTAGCTTGCAAATATGTAGGTGGCGGTGATGGGTCGCTGGATGTCTGTGCCAAGGTCTGCCTTATTGATGAGAGTGAAAATGTCATCTTCTATAGCTATGTCAAGCCCATAATTCCCGTTACAAATTATAGGTATGAAATGACGGGCATTCGTCCCGAACACCTTCGAGATGCAATGCCATTGAAGCAAGTTCAAAAGAAAATTCAAGACATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTGTGTGGAAGACGATCTCAAACGTCTACAAATCGGATATCCATCCATCATGATAAGATTTGAGATTCAAAATGGAGTACAAGATCCTTATGAAGAATGTGTTGGTGGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGCATCATCCAATGGCTTCTGACCCACAAAACAAAAACAACTTTGCAGCTTGGAGGGAGAATGAGCTTGAGAGGATGAGCCCAGAACAGATGTTGGAGATTTCTAGGTCTGATTATTACTGTTGGTGCATGGATTTGAGGATTTGA

Coding sequence (CDS)

ATGGATCATTCAGCTGAGACATCTAGGCACAAGTGCGCTGCTTGCTTCAGGCAATTCAACAAGATTGAGCATTTGGTTGATCATATGAGGACCTCTTTCCACTCACCTCATGAACCCACTTGTGCTGTTTGCAAGAAACACTGTCGTTCTCTTGATTCTCTTAGAGAACATCTCATTGGGCCGCTGCCGAAGCAAGAATGCAAAAACGTCTTCGACATGCGAGGATGCAAGTTTTGCTTGGCCATCCTTGACAGTTCATACTCACAAAGGCTCCACCAAGAAAGATGCCAATTCTCGTGTGTCAATTCTGGGCTTCTTGCTCGTTTGGCCAACTTGGGAATTCGCGATGGTTCAACCGCCATCGACGGTGGAAGAACTCGAGGCTCCGGTCCCGTGGCGTTAGCTTGCAAATATGTAGGTGGCGGTGATGGGTCGCTGGATGTCTGTGCCAAGGTCTGCCTTATTGATGAGAGTGAAAATGTCATCTTCTATAGCTATGTCAAGCCCATAATTCCCGTTACAAATTATAGGTATGAAATGACGGGCATTCGTCCCGAACACCTTCGAGATGCAATGCCATTGAAGCAAGTTCAAAAGAAAATTCAAGACATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTGTGTGGAAGACGATCTCAAACGTCTACAAATCGGATATCCATCCATCATGATAAGATTTGAGATTCAAAATGGAGTACAAGATCCTTATGAAGAATGTGTTGGTGGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGCATCATCCAATGGCTTCTGACCCACAAAACAAAAACAACTTTGCAGCTTGGAGGGAGAATGAGCTTGAGAGGATGAGCCCAGAACAGATGTTGGAGATTTCTAGGTCTGATTATTACTGTTGGTGCATGGATTTGAGGATTTGA

Protein sequence

MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIGPLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEMTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIRFEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEISRSDYYCWCMDLRI

Homology

[Close]

BLAST of Csor.00g313500 vs. ExPASy Swiss-Prot
Match: Q9GZR2 (RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 2.2e-14
Identity = 50/134 (37.31%), Postives = 78/134 (58.21%), Query Frame = 0


Query: 112 LGIRDGSTAID-------GGRTRGSGPVALACKYVG-GGDGSLDVCAKVCLIDESENVIF 171
           LG  +GS ++        GG TR    +AL C+ VG G  G   + A+V ++++    ++
Sbjct: 220 LGQSEGSVSLSLVKEQAFGGLTRA---LALDCEMVGVGPKGEESMAARVSIVNQYGKCVY 279

Query: 172 YSYVKPIIPVTNYRYEMTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDD 231
             YVKP  PVT+YR  ++GIRPE+L+    L+ VQK++ ++L     K R+LVGH + +D
Sbjct: 280 DKYVKPTEPVTDYRTAVSGIRPENLKQGEELEVVQKEVAEML-----KGRILVGHALHND 339

Query: 232 LKRLQIGYPSIMIR 238
           LK L + +P   IR
Sbjct: 340 LKVLFLDHPKKKIR 345

[Close]

BLAST of Csor.00g313500 vs. ExPASy Swiss-Prot
Match: Q6CMT3 (RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=REX4 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.9e-13
Identity = 43/115 (37.39%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 125 RTRGSGP-VALACKYVG-GGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEMTG 184
           RT G G  V++ C++VG G DG     A+V +++   NV+   +V+P  PVT++R  ++G
Sbjct: 112 RTNGVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSG 171

Query: 185 IRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR 238
           I+P H+ +A+  +  QK++ ++L     K R+LVGH V  DL  L + +P  MIR
Sbjct: 172 IKPHHMANAVTQEDCQKQVSNVL-----KGRILVGHSVHHDLTALMLSHPRRMIR 221

[Close]

BLAST of Csor.00g313500 vs. ExPASy Swiss-Prot
Match: Q91560 (RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 1.9e-13
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 132 VALACKYVG-GGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEMTGIRPEHLRD 191
           VA+ C+ VG G DG   + A+V +++     ++  YVKP   VT+YR  ++GIRPE ++ 
Sbjct: 235 VAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPEDVKK 294

Query: 192 AMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR 238
             P K VQK++ +IL     + R LVGH V +DLK L + +P   IR
Sbjct: 295 GEPFKVVQKEVSEIL-----RGRTLVGHAVHNDLKILFLDHPKKAIR 336

[Close]

BLAST of Csor.00g313500 vs. ExPASy Swiss-Prot
Match: Q08237 (RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=REX4 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.2e-13
Identity = 48/184 (26.09%), Postives = 90/184 (48.91%), Query Frame = 0


Query: 119 TAIDGGRTRGSGP-VALACKYVG-GGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNY 178
           T I+  +++  G  +A+ C++VG G +G     A++ +++   +V+   +VKP   V  +
Sbjct: 108 TRINSNKSKEIGKYIAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEW 167

Query: 179 RYEMTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMI 238
           R  ++GI+PEH+++A+  K+ QKK  DIL     + R+LVGH ++ DL+ L + +P  ++
Sbjct: 168 RTWVSGIKPEHMKNAITFKEAQKKTADIL-----EGRILVGHALKHDLEALMLSHPKSLL 227

Query: 239 R-----------------------------FEIQNGVQDPYEECVGGMRLYKRMRSQVHR 272
           R                               IQ G     E+    M LYK+ +++  +
Sbjct: 228 RDTSRHLPFRKLYAKGKTPSLKKLTREVLKISIQEGEHSSVEDARATMLLYKKEKTEFEK 286

[Close]

BLAST of Csor.00g313500 vs. ExPASy Swiss-Prot
Match: Q6PAQ4 (RNA exonuclease 4 OS=Mus musculus OX=10090 GN=Rexo4 PE=2 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 5.5e-13
Identity = 43/116 (37.07%), Postives = 70/116 (60.34%), Query Frame = 0


Query: 123 GGRTRGSGPVALACKYVG-GGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEMT 182
           GG T+    +AL C+ VG G  G   + A+V ++++    ++  YVKP  PVT+YR  ++
Sbjct: 248 GGLTKA---LALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVS 307

Query: 183 GIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR 238
           GIRPE+L+     + V+K++ ++L     K R+LVGH + +DLK L + +P   IR
Sbjct: 308 GIRPENLKQGEEFEVVKKEVAEML-----KGRILVGHALHNDLKVLFLDHPKKKIR 355

[Close]

BLAST of Csor.00g313500 vs. NCBI nr
Match: KAG6578645.1 (hypothetical protein SDJN03_23093, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 662 bits (1708), Expect = 2.14e-240
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0


Query: 1   MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG 60
           MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG
Sbjct: 1   MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG 60

Query: 61  PLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTA 120
           PLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTA
Sbjct: 61  PLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTA 120

Query: 121 IDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEM 180
           IDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEM
Sbjct: 121 IDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEM 180

Query: 181 TGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIRFEI 240
           TGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIRFEI
Sbjct: 181 TGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIRFEI 240

Query: 241 QNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQML 300
           QNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQML
Sbjct: 241 QNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQML 300

Query: 301 EISRSDYYCWCMDLRI 316
           EISRSDYYCWCMDLRI
Sbjct: 301 EISRSDYYCWCMDLRI 316

[Close]

BLAST of Csor.00g313500 vs. NCBI nr
Match: XP_022938612.1 (RNA exonuclease 4-like [Cucurbita moschata])

HSP 1 Score: 645 bits (1665), Expect = 2.11e-233
Identity = 315/343 (91.84%), Postives = 316/343 (92.13%), Query Frame = 0


Query: 1   MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG 60
           MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG
Sbjct: 1   MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG 60

Query: 61  PLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTA 120
           PLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTA
Sbjct: 61  PLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTA 120

Query: 121 IDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEM 180
           IDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEM
Sbjct: 121 IDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEM 180

Query: 181 TGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR--- 240
           TGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR   
Sbjct: 181 TGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIRDIA 240

Query: 241 ------------------------FEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPM 300
                                   FEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPM
Sbjct: 241 NYPPLMKTSKLCNSLKYLAQVYLGFEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPM 300

Query: 301 ASDPQNKNNFAAWRENELERMSPEQMLEISRSDYYCWCMDLRI 316
           ASDPQNKNNFAAWRE+ELERMSPEQMLEISRSDYYCWCMDLRI
Sbjct: 301 ASDPQNKNNFAAWRESELERMSPEQMLEISRSDYYCWCMDLRI 343

[Close]

BLAST of Csor.00g313500 vs. NCBI nr
Match: XP_022993635.1 (RNA exonuclease 4-like [Cucurbita maxima])

HSP 1 Score: 640 bits (1651), Expect = 2.88e-231
Identity = 312/343 (90.96%), Postives = 314/343 (91.55%), Query Frame = 0


Query: 1   MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG 60
           MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG
Sbjct: 1   MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG 60

Query: 61  PLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTA 120
           PLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTA
Sbjct: 61  PLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTA 120

Query: 121 IDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEM 180
           IDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKP IPVTNYRYE 
Sbjct: 121 IDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKPTIPVTNYRYET 180

Query: 181 TGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR--- 240
           TGIRPEH+RDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR   
Sbjct: 181 TGIRPEHVRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIRDIA 240

Query: 241 ------------------------FEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPM 300
                                   FEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPM
Sbjct: 241 NYPPLMKTSKLCNSLKYLAQVYLGFEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPM 300

Query: 301 ASDPQNKNNFAAWRENELERMSPEQMLEISRSDYYCWCMDLRI 316
           ASDPQNKNNFAAWRE+ELERMSPEQMLEISRSDYYCWCMDLRI
Sbjct: 301 ASDPQNKNNFAAWRESELERMSPEQMLEISRSDYYCWCMDLRI 343

[Close]

BLAST of Csor.00g313500 vs. NCBI nr
Match: XP_023551468.1 (RNA exonuclease 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 630 bits (1624), Expect = 3.62e-227
Identity = 308/343 (89.80%), Postives = 313/343 (91.25%), Query Frame = 0


Query: 1   MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG 60
           MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG
Sbjct: 1   MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG 60

Query: 61  PLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTA 120
           PLPKQECKNVFDMRGCKFCLAILDSSYSQR+HQERCQFSCVNSGLLARLA+LGIRDGSTA
Sbjct: 61  PLPKQECKNVFDMRGCKFCLAILDSSYSQRVHQERCQFSCVNSGLLARLASLGIRDGSTA 120

Query: 121 IDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEM 180
           IDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESEN++FYSYVKPIIPVTNYRYE 
Sbjct: 121 IDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENIVFYSYVKPIIPVTNYRYET 180

Query: 181 TGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR--- 240
           TGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR   
Sbjct: 181 TGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIRDIA 240

Query: 241 ------------------------FEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPM 300
                                   FEIQNGVQD Y+ CVGGMRLYKRMRSQVHRIEHHPM
Sbjct: 241 NYPPLMKTSKLCNSLKYLAQVYLGFEIQNGVQDLYD-CVGGMRLYKRMRSQVHRIEHHPM 300

Query: 301 ASDPQNKNNFAAWRENELERMSPEQMLEISRSDYYCWCMDLRI 316
           ASDPQNKNNFAAWRENELERMSPEQMLEISRSDYYCWCMDLRI
Sbjct: 301 ASDPQNKNNFAAWRENELERMSPEQMLEISRSDYYCWCMDLRI 342

[Close]

BLAST of Csor.00g313500 vs. NCBI nr
Match: XP_011656270.1 (RNA exonuclease 4 [Cucumis sativus])

HSP 1 Score: 578 bits (1489), Expect = 1.46e-206
Identity = 279/344 (81.10%), Postives = 296/344 (86.05%), Query Frame = 0


Query: 1   MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG 60
           MDHS ETSRHKCAACFRQFNKIEHLVDHMRTSFHS HEPTCA+CKKHCRSLDSLREHLIG
Sbjct: 1   MDHSLETSRHKCAACFRQFNKIEHLVDHMRTSFHSHHEPTCAICKKHCRSLDSLREHLIG 60

Query: 61  PLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTA 120
           PLPKQECKN+F  RGCKFCLAI DSSYSQRLHQERCQFS VNSGLLAR ANLGIRDGST 
Sbjct: 61  PLPKQECKNIFATRGCKFCLAIFDSSYSQRLHQERCQFSPVNSGLLARFANLGIRDGSTV 120

Query: 121 IDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYE 180
           ID GRTRGSG +ALACKYVGGG DGS+D+CAKVCLIDE ENVIFYSYVKP+  VTNYRYE
Sbjct: 121 IDSGRTRGSGAIALACKYVGGGSDGSMDICAKVCLIDEGENVIFYSYVKPVTAVTNYRYE 180

Query: 181 MTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR-- 240
            TGIRPEH+RDAMP+KQVQKKIQ+ILYNGGEKAR+LVG CVEDDLKRLQIGYPS MIR  
Sbjct: 181 TTGIRPEHIRDAMPVKQVQKKIQEILYNGGEKARILVGDCVEDDLKRLQIGYPSFMIRDT 240

Query: 241 -------------------------FEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHP 300
                                    F++QNG+QDPYEEC+  MRLYKRMRSQVHR E++P
Sbjct: 241 ANYPPLMKSSKLCNSLKYLAQVYLGFDLQNGIQDPYEECIVAMRLYKRMRSQVHRKENYP 300

Query: 301 MASDPQNKNNFAAWRENELERMSPEQMLEISRSDYYCWCMDLRI 316
           MASDPQNKNNFA WRENEL+RMSPEQMLEISRSDYYCWCMDLRI
Sbjct: 301 MASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMDLRI 344

[Close]

BLAST of Csor.00g313500 vs. ExPASy TrEMBL
Match: A0A6J1FEK0 (RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111444794 PE=3 SV=1)

HSP 1 Score: 645 bits (1665), Expect = 1.02e-233
Identity = 315/343 (91.84%), Postives = 316/343 (92.13%), Query Frame = 0


Query: 1   MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG 60
           MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG
Sbjct: 1   MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG 60

Query: 61  PLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTA 120
           PLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTA
Sbjct: 61  PLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTA 120

Query: 121 IDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEM 180
           IDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEM
Sbjct: 121 IDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEM 180

Query: 181 TGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR--- 240
           TGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR   
Sbjct: 181 TGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIRDIA 240

Query: 241 ------------------------FEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPM 300
                                   FEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPM
Sbjct: 241 NYPPLMKTSKLCNSLKYLAQVYLGFEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPM 300

Query: 301 ASDPQNKNNFAAWRENELERMSPEQMLEISRSDYYCWCMDLRI 316
           ASDPQNKNNFAAWRE+ELERMSPEQMLEISRSDYYCWCMDLRI
Sbjct: 301 ASDPQNKNNFAAWRESELERMSPEQMLEISRSDYYCWCMDLRI 343

[Close]

BLAST of Csor.00g313500 vs. ExPASy TrEMBL
Match: A0A6J1JZ30 (RNA exonuclease 4 OS=Cucurbita maxima OX=3661 GN=LOC111489566 PE=3 SV=1)

HSP 1 Score: 640 bits (1651), Expect = 1.39e-231
Identity = 312/343 (90.96%), Postives = 314/343 (91.55%), Query Frame = 0


Query: 1   MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG 60
           MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG
Sbjct: 1   MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG 60

Query: 61  PLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTA 120
           PLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTA
Sbjct: 61  PLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTA 120

Query: 121 IDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEM 180
           IDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKP IPVTNYRYE 
Sbjct: 121 IDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKPTIPVTNYRYET 180

Query: 181 TGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR--- 240
           TGIRPEH+RDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR   
Sbjct: 181 TGIRPEHVRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIRDIA 240

Query: 241 ------------------------FEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPM 300
                                   FEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPM
Sbjct: 241 NYPPLMKTSKLCNSLKYLAQVYLGFEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPM 300

Query: 301 ASDPQNKNNFAAWRENELERMSPEQMLEISRSDYYCWCMDLRI 316
           ASDPQNKNNFAAWRE+ELERMSPEQMLEISRSDYYCWCMDLRI
Sbjct: 301 ASDPQNKNNFAAWRESELERMSPEQMLEISRSDYYCWCMDLRI 343

[Close]

BLAST of Csor.00g313500 vs. ExPASy TrEMBL
Match: A0A6J1BXL4 (RNA exonuclease 4 OS=Momordica charantia OX=3673 GN=LOC111006633 PE=3 SV=1)

HSP 1 Score: 563 bits (1451), Expect = 4.03e-201
Identity = 272/342 (79.53%), Postives = 291/342 (85.09%), Query Frame = 0


Query: 1   MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG 60
           MDH  ETSRHKCAACFRQFNKIEHLVDHMRTSFHS HEP CA+CKKHCRSLDSLREHLIG
Sbjct: 1   MDHPLETSRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIG 60

Query: 61  PLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTA 120
           PLPKQECKN+F  RGCKFCLAILDS YSQRLHQERCQFS VNSGLLARLANLGIRD S  
Sbjct: 61  PLPKQECKNIFTTRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLARLANLGIRDASIV 120

Query: 121 IDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYE 180
           +DGGR R +G VALACKYVGGG DGSLD+CAKVCLIDE+ENVIFYSYVKPIIPVTNYR+E
Sbjct: 121 VDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFE 180

Query: 181 MTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYP------- 240
            TGIRPEHLRDAMPLKQVQKKIQ+ILYNGGEKARVLVGH VEDDLKRLQIGYP       
Sbjct: 181 TTGIRPEHLRDAMPLKQVQKKIQEILYNGGEKARVLVGHGVEDDLKRLQIGYPIIRDTAN 240

Query: 241 ------------------SIMIRFEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPMA 300
                              + + F+IQNG+QDPYE+CV  MRLYKRMRSQVH+IE +PMA
Sbjct: 241 YPPLMKTSKLCNSLKYLAQVYLGFDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMA 300

Query: 301 SDPQNKNNFAAWRENELERMSPEQMLEISRSDYYCWCMDLRI 316
           SDPQNKNNF  WR+NELERM+PE ML+ISRSDYYCWC+DLRI
Sbjct: 301 SDPQNKNNFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI 342

[Close]

BLAST of Csor.00g313500 vs. ExPASy TrEMBL
Match: A0A6J1BZE0 (RNA exonuclease 4 OS=Momordica charantia OX=3673 GN=LOC111006633 PE=3 SV=1)

HSP 1 Score: 558 bits (1437), Expect = 6.11e-199
Identity = 272/345 (78.84%), Postives = 291/345 (84.35%), Query Frame = 0


Query: 1   MDHSAETSR---HKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREH 60
           MDH  ETSR   HKCAACFRQFNKIEHLVDHMRTSFHS HEP CA+CKKHCRSLDSLREH
Sbjct: 1   MDHPLETSRSVRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREH 60

Query: 61  LIGPLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDG 120
           LIGPLPKQECKN+F  RGCKFCLAILDS YSQRLHQERCQFS VNSGLLARLANLGIRD 
Sbjct: 61  LIGPLPKQECKNIFTTRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLARLANLGIRDA 120

Query: 121 STAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNY 180
           S  +DGGR R +G VALACKYVGGG DGSLD+CAKVCLIDE+ENVIFYSYVKPIIPVTNY
Sbjct: 121 SIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNY 180

Query: 181 RYEMTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYP---- 240
           R+E TGIRPEHLRDAMPLKQVQKKIQ+ILYNGGEKARVLVGH VEDDLKRLQIGYP    
Sbjct: 181 RFETTGIRPEHLRDAMPLKQVQKKIQEILYNGGEKARVLVGHGVEDDLKRLQIGYPIIRD 240

Query: 241 ---------------------SIMIRFEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHH 300
                                 + + F+IQNG+QDPYE+CV  MRLYKRMRSQVH+IE +
Sbjct: 241 TANYPPLMKTSKLCNSLKYLAQVYLGFDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDY 300

Query: 301 PMASDPQNKNNFAAWRENELERMSPEQMLEISRSDYYCWCMDLRI 316
           PMASDPQNKNNF  WR+NELERM+PE ML+ISRSDYYCWC+DLRI
Sbjct: 301 PMASDPQNKNNFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI 345

[Close]

BLAST of Csor.00g313500 vs. ExPASy TrEMBL
Match: A0A1S3C947 (RNA exonuclease 4 OS=Cucumis melo OX=3656 GN=LOC103498183 PE=3 SV=1)

HSP 1 Score: 508 bits (1308), Expect = 4.00e-179
Identity = 251/352 (71.31%), Postives = 282/352 (80.11%), Query Frame = 0


Query: 1   MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIG 60
           MDHS ETSRHKCAACFRQFNKIEHLVDHMRTSFHS HEPTCA+CKKHCRSLDSLREHLIG
Sbjct: 1   MDHSLETSRHKCAACFRQFNKIEHLVDHMRTSFHSHHEPTCAICKKHCRSLDSLREHLIG 60

Query: 61  PLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTA 120
           PLPKQEC+N+F  RGCKFCLAILDSSYSQRLHQERCQFS VNSGLLAR ANLGIRDGST 
Sbjct: 61  PLPKQECRNIFATRGCKFCLAILDSSYSQRLHQERCQFSPVNSGLLARFANLGIRDGSTI 120

Query: 121 IDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYE 180
           ID GRTRGSG +ALACKYVGGG DGSLD+CAKVCL+DE ENVIFYSYVKPIIPVTNYRYE
Sbjct: 121 IDSGRTRGSGAIALACKYVGGGSDGSLDICAKVCLVDEGENVIFYSYVKPIIPVTNYRYE 180

Query: 181 MTGIRPEHLRDAMPLKQVQKKIQDILYNGGE----------KARVLVGHCVEDDLKRLQI 240
            TG+RPEHLRDAMPLKQVQKKIQ+ L NG +          KAR+LVGH +++ L  LQI
Sbjct: 181 FTGVRPEHLRDAMPLKQVQKKIQEFLCNGEQMWKIRPGSTRKARILVGHGLQEYLTSLQI 240

Query: 241 GYPSIMIR---------------------------FEIQNGVQ-DPYEECVGGMRLYKRM 300
            YPSIMIR                           + ++NG + + YEECV  MRLY +M
Sbjct: 241 DYPSIMIRDTAKYPPLMKTSKLSNSLHYLTQTYLGYNMENGKKSEGYEECVATMRLYLKM 300

Query: 301 RSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEISRSDYYCWCMD 313
           +SQVH+ E +P+ASDP NK NFA W++ ELE+M+P+Q+L+ISRSDYYCWC+D
Sbjct: 301 KSQVHKREEYPLASDPPNKFNFAIWKQLELEKMTPQQLLQISRSDYYCWCLD 352

[Close]

BLAST of Csor.00g313500 vs. TAIR 10
Match: AT3G27970.1 (Exonuclease family protein )

HSP 1 Score: 434.1 bits (1115), Expect = 9.6e-122
Identity = 210/347 (60.52%), Postives = 260/347 (74.93%), Query Frame = 0


Query: 4   SAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIGPLP 63
           S+ET R+KCAAC+RQFNK+EHLV+HM+ S+HS HEPTC VCKKHCRS +SLREHLIGPLP
Sbjct: 9   SSETLRNKCAACYRQFNKLEHLVEHMKISYHSGHEPTCGVCKKHCRSFESLREHLIGPLP 68

Query: 64  KQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTAIDG 123
           KQECKN+F +RGC+FC+ IL+S  S+R+HQERCQFS VNSGL  R+A LG+RD    ID 
Sbjct: 69  KQECKNIFSLRGCRFCMTILESPNSRRIHQERCQFSSVNSGLTTRMAALGLRD-KAMIDY 128

Query: 124 GRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEMTG 183
             +R    VAL+CK VGGG DGSLD+CA+VC+ DES+NVIF++YVKP + VT+YRYE TG
Sbjct: 129 TSSRSPRVVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAVTSYRYETTG 188

Query: 184 IRPEHLRDAMPLKQVQKKIQDILYNG---------GEKARVLVGHCVEDDLKRLQIGYPS 243
           IRPE+LRDAMPLKQVQ+KIQ+ L NG         G KAR+LVGH ++ DL RLQ+ YPS
Sbjct: 189 IRPENLRDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDLDRLQLEYPS 248

Query: 244 IMIR---------------------------FEIQNGVQDPYEECVGGMRLYKRMRSQVH 303
            MIR                           +++  G+QDPYE+CV  MRLY RMR Q H
Sbjct: 249 SMIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDVHFGIQDPYEDCVATMRLYTRMRYQKH 308

Query: 304 RIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEISRSDYYCWCMD 314
           +IE +P+A+D QN++N  AWR++E ERMSP++ML ISRSDYYCWC+D
Sbjct: 309 KIEAYPLAADAQNRSNQVAWRQSEAERMSPDEMLSISRSDYYCWCLD 354

[Close]

BLAST of Csor.00g313500 vs. TAIR 10
Match: AT5G40310.1 (Exonuclease family protein )

HSP 1 Score: 426.4 bits (1095), Expect = 2.0e-119
Identity = 207/345 (60.00%), Postives = 253/345 (73.33%), Query Frame = 0


Query: 6   ETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIGPLPKQ 65
           +T R+KC  C+RQFNK EHLV+HMR S+HS HEPTC +C KHCRS DSLREHLIGPLPKQ
Sbjct: 2   DTCRNKCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREHLIGPLPKQ 61

Query: 66  ECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTAIDGGR 125
           ECKN+F +RGC+FCL IL+S  ++R+HQERCQ S V SGL+ R+A LG+R+ ST ID   
Sbjct: 62  ECKNIFSIRGCRFCLTILESPNARRIHQERCQLSNVTSGLMIRMAALGLRNNST-IDYTS 121

Query: 126 TRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEMTGIR 185
           +R    VAL+CK VGGG DGSLD+CA+VC+ DESENV+F++YVKP IPVTNYRYEMTGIR
Sbjct: 122 SRSPRVVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYRYEMTGIR 181

Query: 186 PEHLRDAMPLKQVQKKIQDILYNG---------GEKARVLVGHCVEDDLKRLQIGYPSIM 245
           PE+LRDAM LK  Q+K+Q+ L NG           KAR+LVGH +++ L  LQ+ Y S M
Sbjct: 182 PENLRDAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQLEYSSSM 241

Query: 246 IR---------------------------FEIQNGVQDPYEECVGGMRLYKRMRSQVHRI 305
           IR                           ++I  G+QDPYE+CV  MRLY RMR Q HR 
Sbjct: 242 IRDTAEYPPLMKSSKLSNSLKYLTQAYLGYDIHVGIQDPYEDCVATMRLYTRMRYQKHRA 301

Query: 306 EHHPMASDPQNKNNFAAWRENELERMSPEQMLEISRSDYYCWCMD 314
           E +P+ASD QN NNFAAWR+NELERMSPE++L++SRSDYYCWC+D
Sbjct: 302 EAYPLASDTQNHNNFAAWRQNELERMSPEELLDLSRSDYYCWCLD 345

[Close]

BLAST of Csor.00g313500 vs. TAIR 10
Match: AT2G48100.1 (Exonuclease family protein )

HSP 1 Score: 253.8 bits (647), Expect = 1.8e-67
Identity = 131/338 (38.76%), Postives = 199/338 (58.88%), Query Frame = 0


Query: 9   RHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIGP--LPKQE 68
           RH+C AC++ FN+ EHLV+HM+ S+HS H+P C VC KHC+S +S+REHL  P  L K  
Sbjct: 16  RHRCVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVPDHLSKGN 75

Query: 69  CKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTAIDGGRT 128
           CK +F  RGC  CL I + +++   H+ +C  S         L     R+ S+++ G R 
Sbjct: 76  CKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPRP-----LGTSTQRNPSSSLAGSRL 135

Query: 129 RGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEMTGIRP 188
           +    +AL C+ VGGG DG++D CA VCL+D+ ENVIF ++V+P++PVT+YR+E+TG+  
Sbjct: 136 KA---MALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTK 195

Query: 189 EHLRDAMPLKQVQKKIQDIL---YNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR----- 248
           E L+D MPL+ V++++   L    N G    +LVGH +  D+  L++ YPS ++R     
Sbjct: 196 EDLKDGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKY 255

Query: 249 ----------------------FEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPMAS 308
                                 ++IQ G  + YE+CV  MRLYKRMR Q H      + S
Sbjct: 256 VPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEH------VCS 315

Query: 309 DPQNKNNFAAWRENELERMSPEQMLEISRSDYYCWCMD 314
                N   + ++++LE+M+ E++ + S S+Y CWC+D
Sbjct: 316 GKAEGNGLNSRKQSDLEKMNAEELYQKSTSEYRCWCLD 339

[Close]

BLAST of Csor.00g313500 vs. TAIR 10
Match: AT2G48100.2 (Exonuclease family protein )

HSP 1 Score: 253.8 bits (647), Expect = 1.8e-67
Identity = 131/338 (38.76%), Postives = 199/338 (58.88%), Query Frame = 0


Query: 9   RHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIGP--LPKQE 68
           RH+C AC++ FN+ EHLV+HM+ S+HS H+P C VC KHC+S +S+REHL  P  L K  
Sbjct: 16  RHRCVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVPDHLSKGN 75

Query: 69  CKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTAIDGGRT 128
           CK +F  RGC  CL I + +++   H+ +C  S         L     R+ S+++ G R 
Sbjct: 76  CKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPRP-----LGTSTQRNPSSSLAGSRL 135

Query: 129 RGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEMTGIRP 188
           +    +AL C+ VGGG DG++D CA VCL+D+ ENVIF ++V+P++PVT+YR+E+TG+  
Sbjct: 136 KA---MALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTK 195

Query: 189 EHLRDAMPLKQVQKKIQDIL---YNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR----- 248
           E L+D MPL+ V++++   L    N G    +LVGH +  D+  L++ YPS ++R     
Sbjct: 196 EDLKDGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKY 255

Query: 249 ----------------------FEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPMAS 308
                                 ++IQ G  + YE+CV  MRLYKRMR Q H      + S
Sbjct: 256 VPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEH------VCS 315

Query: 309 DPQNKNNFAAWRENELERMSPEQMLEISRSDYYCWCMD 314
                N   + ++++LE+M+ E++ + S S+Y CWC+D
Sbjct: 316 GKAEGNGLNSRKQSDLEKMNAEELYQKSTSEYRCWCLD 339

[Close]

BLAST of Csor.00g313500 vs. TAIR 10
Match: AT2G48100.3 (Exonuclease family protein )

HSP 1 Score: 253.8 bits (647), Expect = 1.8e-67
Identity = 131/338 (38.76%), Postives = 199/338 (58.88%), Query Frame = 0


Query: 9   RHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIGP--LPKQE 68
           RH+C AC++ FN+ EHLV+HM+ S+HS H+P C VC KHC+S +S+REHL  P  L K  
Sbjct: 16  RHRCVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVPDHLSKGN 75

Query: 69  CKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTAIDGGRT 128
           CK +F  RGC  CL I + +++   H+ +C  S         L     R+ S+++ G R 
Sbjct: 76  CKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPRP-----LGTSTQRNPSSSLAGSRL 135

Query: 129 RGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEMTGIRP 188
           +    +AL C+ VGGG DG++D CA VCL+D+ ENVIF ++V+P++PVT+YR+E+TG+  
Sbjct: 136 KA---MALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTK 195

Query: 189 EHLRDAMPLKQVQKKIQDIL---YNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR----- 248
           E L+D MPL+ V++++   L    N G    +LVGH +  D+  L++ YPS ++R     
Sbjct: 196 EDLKDGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKY 255

Query: 249 ----------------------FEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPMAS 308
                                 ++IQ G  + YE+CV  MRLYKRMR Q H      + S
Sbjct: 256 VPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEH------VCS 315

Query: 309 DPQNKNNFAAWRENELERMSPEQMLEISRSDYYCWCMD 314
                N   + ++++LE+M+ E++ + S S+Y CWC+D
Sbjct: 316 GKAEGNGLNSRKQSDLEKMNAEELYQKSTSEYRCWCLD 339

The following BLAST results are available for this feature:

BLAST of Csor.00g313500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9GZR2	2.2e-14	37.31	RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2	[more]
Q6CMT3	1.9e-13	37.39	RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 707...	[more]
Q91560	1.9e-13	40.19	RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2	[more]
Q08237	4.2e-13	26.09	RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=55...	[more]
Q6PAQ4	5.5e-13	37.07	RNA exonuclease 4 OS=Mus musculus OX=10090 GN=Rexo4 PE=2 SV=2	[more]

BLAST of Csor.00g313500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578645.1	2.14e-240	100.00	hypothetical protein SDJN03_23093, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022938612.1	2.11e-233	91.84	RNA exonuclease 4-like [Cucurbita moschata]	[more]
XP_022993635.1	2.88e-231	90.96	RNA exonuclease 4-like [Cucurbita maxima]	[more]
XP_023551468.1	3.62e-227	89.80	RNA exonuclease 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_011656270.1	1.46e-206	81.10	RNA exonuclease 4 [Cucumis sativus]	[more]

BLAST of Csor.00g313500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEK0	1.02e-233	91.84	RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111444794 PE=3 SV=1	[more]
A0A6J1JZ30	1.39e-231	90.96	RNA exonuclease 4 OS=Cucurbita maxima OX=3661 GN=LOC111489566 PE=3 SV=1	[more]
A0A6J1BXL4	4.03e-201	79.53	RNA exonuclease 4 OS=Momordica charantia OX=3673 GN=LOC111006633 PE=3 SV=1	[more]
A0A6J1BZE0	6.11e-199	78.84	RNA exonuclease 4 OS=Momordica charantia OX=3673 GN=LOC111006633 PE=3 SV=1	[more]
A0A1S3C947	4.00e-179	71.31	RNA exonuclease 4 OS=Cucumis melo OX=3656 GN=LOC103498183 PE=3 SV=1	[more]

BLAST of Csor.00g313500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27970.1	9.6e-122	60.52	Exonuclease family protein	[more]
AT5G40310.1	2.0e-119	60.00	Exonuclease family protein	[more]
AT2G48100.1	1.8e-67	38.76	Exonuclease family protein	[more]
AT2G48100.2	1.8e-67	38.76	Exonuclease family protein	[more]
AT2G48100.3	1.8e-67	38.76	Exonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 130..267 e-value: 1.3E-4 score: 26.2
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 156..232 e-value: 8.6E-5 score: 23.1
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 129..238 e-value: 2.8E-22 score: 81.1
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 1..60 e-value: 2.9E-5 score: 26.0
None	No IPR available	PANTHER	PTHR12801	RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED	coord: 2..237 coord: 238..313
None	No IPR available	PANTHER	PTHR12801:SF122	OS02G0709000 PROTEIN	coord: 2..237 coord: 238..313
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 12..34
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 10..39 score: 11.509996
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 144..263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g313500.m01	Csor.00g313500.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006364	rRNA processing
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003676	nucleic acid binding