Csor.00g312920 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g312920
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	60S ribosomal protein L34
Location	Csor_Chr15: 1340473 .. 1342073 (-)
RNA-Seq Expression	Csor.00g312920
Synteny	Csor.00g312920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGATGAAGGGGGGTTTTGAGATACACCGAGTATATTCTTTATATTTCTTCTTCGTCCATGGAAGCTATGGAACTGTGAAGCTTAGATGCTCCATAACCAACCACCAAAGCTCAACCAATTCTTCAAGAACGGTACCTTGTTAGCACAAAAGCATCATCCAAATTTACTTCATTCCAAATCTGTACAAGCATTTGGGCAAATGTGTACTGGTTTTACTAAACAAACCCTGTTGCCATTTTGCTTCGAATCCACCATGCACTCCTTTCTCTTCATTATGTTTTGTTCACTCTCTCTCTCTCTCGAATTACCCCTAAAATCTCAACCGTCAATTTGAAACGTACATCGTCCGTTGGATCTAGGGCTTCAAAAGTTTAAAACTTTACACTATATAAACAACTCCCTCTCCTGGATTGCTGCCGCTACTGCCTCGATTTTTCTTAGAGACGCATAGATTCCCCTGAGGCTTATGGAGCTCTCGAATAGCCTCCCCTTAATTGAGGCTCGACTCCTTTCTCTGGAGCCCTCGAACAAAGTACACCATTTGTTCGACATGTTAGTCACTTTTGACTACACCTTCGAGGCTCGCCATTCTTTGTTCGATATTTGAGGATTCTATTGGCATGGTTAAGTTTAGGGCATGGCTCTGATACCAGTTGTTGGTGACAACAGAAAACTGAAGTGAGATTGAGAGGAGGAGTGATTTGAATGATGGGGAGGGAGGTCCTTTTATAGGGAGATTCCCGGAGTTGGTTGAGATTTGTGTGGATGAAATTAGATTCACCTCCTTCTATTATTAGCTTCAACAACTTATTCAAACTCTATTATTAGCTTCAACACTTACTTACCGTAAGCGCCACAGCTACGCCACCAAATCCAATCAGCACCGCGTTGTCAAGACTCCGGGTACGTTTTTTTTGTCCTTCATCAGTGTAATTCCAGCTCTTATGAGACGTTTTTTCCCTTCAATTTCGTGACCATTTTGGGTATTGTGCTGATGCGTTTTAGGTGGAAAGTTGATCTATCAAACCACCAAGAAGAGGGCCAGCGGTCCCAAATGTCCTGTTACCGGGAAGAGAATCCAAGGGGTATGTGTGATTTTATGCCTTTGATTCAAAGATTTTCAGTTTTTGGGGTGTTTATAATTGCATTTGGGGATCGTCATTCTTGTTGAAGCTGACATTGCGTCGCCCTGATAGCTATCTCTCAGTCTCTAGAACATATAATTGTGGCAATCAATTGTCATAGCTGAAAGAAAATGTAATTGTATTGTATTTTAGTTGTAATGTTTTGTTTGAACAGATTCCGCACTTGAGGCCTGCTGAATACAAGAGGTCTAGACTGGCTAGGAACCGAAGAACTGTAAACCGGGCATATGGTGGCGTGTTGTCAGGAAGTGCTGTTAGAGAGAGGTATGTGCTTCATTGAATCAGCCCTGATATTTTTGATTTCCTTTGGGTTTTCTACCAAATTTAAGCAGTAATTCAACATTGGTTGCAGGATCATGCGGGCTTTTCTTGTAGAAGAGCAGAAGATTGTGAAAAAGGTATTGAAAATCCAAAAGGCAAAGGAAAAGCTAGCTGCCAAGAGTTCAAAATGA

mRNA sequence

ATGCAGATGAAGGGGGGTTTTGAGATACACCGAGTATATTCTTTATATTTCTTCTTCGTCCATGGAAGCTATGGAACTGTGAAGCTTAGATGCTCCATAACCAACCACCAAAGCTCAACCAATTCTTCAAGAACGCGCCACAGCTACGCCACCAAATCCAATCAGCACCGCGTTGTCAAGACTCCGGGTGGAAAGTTGATCTATCAAACCACCAAGAAGAGGGCCAGCGGTCCCAAATGTCCTGTTACCGGGAAGAGAATCCAAGGGATTCCGCACTTGAGGCCTGCTGAATACAAGAGGTCTAGACTGGCTAGGAACCGAAGAACTGTAAACCGGGCATATGGTGGCGTGTTGTCAGGAAGTGCTGTTAGAGAGAGGATCATGCGGGCTTTTCTTGTAGAAGAGCAGAAGATTGTGAAAAAGGTATTGAAAATCCAAAAGGCAAAGGAAAAGCTAGCTGCCAAGAGTTCAAAATGA

Coding sequence (CDS)

ATGCAGATGAAGGGGGGTTTTGAGATACACCGAGTATATTCTTTATATTTCTTCTTCGTCCATGGAAGCTATGGAACTGTGAAGCTTAGATGCTCCATAACCAACCACCAAAGCTCAACCAATTCTTCAAGAACGCGCCACAGCTACGCCACCAAATCCAATCAGCACCGCGTTGTCAAGACTCCGGGTGGAAAGTTGATCTATCAAACCACCAAGAAGAGGGCCAGCGGTCCCAAATGTCCTGTTACCGGGAAGAGAATCCAAGGGATTCCGCACTTGAGGCCTGCTGAATACAAGAGGTCTAGACTGGCTAGGAACCGAAGAACTGTAAACCGGGCATATGGTGGCGTGTTGTCAGGAAGTGCTGTTAGAGAGAGGATCATGCGGGCTTTTCTTGTAGAAGAGCAGAAGATTGTGAAAAAGGTATTGAAAATCCAAAAGGCAAAGGAAAAGCTAGCTGCCAAGAGTTCAAAATGA

Protein sequence

MQMKGGFEIHRVYSLYFFFVHGSYGTVKLRCSITNHQSSTNSSRTRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKSSK

Homology

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BLAST of Csor.00g312920 vs. ExPASy Swiss-Prot
Match: P41098 (60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.1e-52
Identity = 108/113 (95.58%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 44  RTRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 103
           R RHSYATKSNQHRVVKTPGGKLIYQ+TKKRASGPKCPVTGKRIQGIPHLRP EYKRSRL
Sbjct: 8   RKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRL 67

Query: 104 ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 157
           +RNRRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 68  SRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Csor.00g312920 vs. ExPASy Swiss-Prot
Match: Q42351 (60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.3e-51
Identity = 103/113 (91.15%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 44  RTRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 103
           R+RHSYATKSNQHR+VKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRP+EYKRSRL
Sbjct: 8   RSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPSEYKRSRL 67

Query: 104 ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 157
           +RNRRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 68  SRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]

BLAST of Csor.00g312920 vs. ExPASy Swiss-Prot
Match: Q9FE65 (60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.1e-50
Identity = 103/112 (91.96%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 44  RTRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 103
           R+RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP EYKRSRL
Sbjct: 8   RSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRL 67

Query: 104 ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAK 156
           +RNRRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 68  SRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]

BLAST of Csor.00g312920 vs. ExPASy Swiss-Prot
Match: P40590 (60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.1e-50
Identity = 104/113 (92.04%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 44  RTRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 103
           R RHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRP EYKRSRL
Sbjct: 8   RRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRL 67

Query: 104 ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 157
           +RNRRTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLKIQK KEK AAK+
Sbjct: 68  SRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKN 120

[Close]

BLAST of Csor.00g312920 vs. ExPASy Swiss-Prot
Match: Q9LJW6 (60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.4e-49
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 44  RTRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 103
           R+RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPAEYKRSRL
Sbjct: 8   RSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 67

Query: 104 ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 157
           ARN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 68  ARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]

BLAST of Csor.00g312920 vs. NCBI nr
Match: KAG6578587.1 (60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 301 bits (770), Expect = 1.17e-102
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MQMKGGFEIHRVYSLYFFFVHGSYGTVKLRCSITNHQSSTNSSRTRHSYATKSNQHRVVK 60
           MQMKGGFEIHRVYSLYFFFVHGSYGTVKLRCSITNHQSSTNSSRTRHSYATKSNQHRVVK
Sbjct: 1   MQMKGGFEIHRVYSLYFFFVHGSYGTVKLRCSITNHQSSTNSSRTRHSYATKSNQHRVVK 60

Query: 61  TPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYGGVLSG 120
           TPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYGGVLSG
Sbjct: 61  TPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYGGVLSG 120

Query: 121 SAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKSSK 158
           SAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKSSK
Sbjct: 121 SAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKSSK 158

[Close]

BLAST of Csor.00g312920 vs. NCBI nr
Match: XP_022939767.1 (60S ribosomal protein L34 [Cucurbita moschata] >KAG7016140.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 214 bits (545), Expect = 6.93e-69
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 44  RTRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 103
           R RHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL
Sbjct: 8   RKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 67

Query: 104 ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKSSK 158
           ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKSSK
Sbjct: 68  ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKSSK 122

[Close]

BLAST of Csor.00g312920 vs. NCBI nr
Match: XP_023550590.1 (60S ribosomal protein L34 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214 bits (544), Expect = 9.84e-69
Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 44  RTRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 103
           R RHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL
Sbjct: 8   RKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 67

Query: 104 ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKSSK 158
           ARNRRT+NRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKSSK
Sbjct: 68  ARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKSSK 122

[Close]

BLAST of Csor.00g312920 vs. NCBI nr
Match: XP_022993685.1 (60S ribosomal protein L34 [Cucurbita maxima])

HSP 1 Score: 211 bits (537), Expect = 1.07e-67
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 44  RTRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 103
           R RHSYATKSNQHR+VKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL
Sbjct: 8   RKRHSYATKSNQHRIVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 67

Query: 104 ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 156
           ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 68  ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Csor.00g312920 vs. NCBI nr
Match: XP_038889603.1 (60S ribosomal protein L34 [Benincasa hispida])

HSP 1 Score: 210 bits (534), Expect = 3.08e-67
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 44  RTRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 103
           R RHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL
Sbjct: 8   RKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 67

Query: 104 ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 156
           ARNRRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 68  ARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Csor.00g312920 vs. ExPASy TrEMBL
Match: A0A6J1FHR3 (60S ribosomal protein L34 OS=Cucurbita moschata OX=3662 GN=LOC111445551 PE=3 SV=1)

HSP 1 Score: 214 bits (545), Expect = 3.36e-69
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 44  RTRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 103
           R RHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL
Sbjct: 8   RKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 67

Query: 104 ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKSSK 158
           ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKSSK
Sbjct: 68  ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKSSK 122

[Close]

BLAST of Csor.00g312920 vs. ExPASy TrEMBL
Match: A0A6J1JZ78 (60S ribosomal protein L34 OS=Cucurbita maxima OX=3661 GN=LOC111489604 PE=3 SV=1)

HSP 1 Score: 211 bits (537), Expect = 5.20e-68
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 44  RTRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 103
           R RHSYATKSNQHR+VKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL
Sbjct: 8   RKRHSYATKSNQHRIVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 67

Query: 104 ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 156
           ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 68  ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Csor.00g312920 vs. ExPASy TrEMBL
Match: A0A068TVQ9 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00032233001 PE=3 SV=1)

HSP 1 Score: 209 bits (533), Expect = 2.12e-67
Identity = 110/113 (97.35%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 44  RTRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 103
           R RHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL
Sbjct: 8   RKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 67

Query: 104 ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 156
           ARNRRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 68  ARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Csor.00g312920 vs. ExPASy TrEMBL
Match: A0A6P6V549 (60S ribosomal protein L34 OS=Coffea arabica OX=13443 GN=LOC113717585 PE=3 SV=1)

HSP 1 Score: 209 bits (533), Expect = 2.12e-67
Identity = 110/113 (97.35%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 44  RTRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 103
           R RHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL
Sbjct: 8   RKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 67

Query: 104 ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 156
           ARNRRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 68  ARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Csor.00g312920 vs. ExPASy TrEMBL
Match: A0A6P6UY28 (60S ribosomal protein L34-like OS=Coffea arabica OX=13443 GN=LOC113715348 PE=3 SV=1)

HSP 1 Score: 209 bits (533), Expect = 2.12e-67
Identity = 110/113 (97.35%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 44  RTRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 103
           R RHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL
Sbjct: 8   RKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 67

Query: 104 ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 156
           ARNRRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 68  ARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of Csor.00g312920 vs. TAIR 10
Match: AT1G26880.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 202.2 bits (513), Expect = 3.1e-52
Identity = 103/113 (91.15%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 44  RTRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 103
           R+RHSYATKSNQHR+VKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRP+EYKRSRL
Sbjct: 8   RSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPSEYKRSRL 67

Query: 104 ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 157
           +RNRRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 68  SRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]

BLAST of Csor.00g312920 vs. TAIR 10
Match: AT1G69620.1 (ribosomal protein L34 )

HSP 1 Score: 199.9 bits (507), Expect = 1.5e-51
Identity = 103/112 (91.96%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 44  RTRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 103
           R+RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP EYKRSRL
Sbjct: 8   RSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRL 67

Query: 104 ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAK 156
           +RNRRTVNRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 68  SRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]

BLAST of Csor.00g312920 vs. TAIR 10
Match: AT3G28900.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 197.2 bits (500), Expect = 9.9e-51
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 44  RTRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 103
           R+RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPAEYKRSRL
Sbjct: 8   RSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 67

Query: 104 ARNRRTVNRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 157
           ARN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 68  ARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]

BLAST of Csor.00g312920 vs. TAIR 10
Match: AT1G26880.2 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 161.8 bits (408), Expect = 4.6e-40
Identity = 78/85 (91.76%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 44  RTRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 103
           R+RHSYATKSNQHR+VKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRP+EYKRSRL
Sbjct: 8   RSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPSEYKRSRL 67

Query: 104 ARNRRTVNRAYGGVLSGSAVRERIM 129
           +RNRRTVNRAYGGVLSGSAVRER +
Sbjct: 68  SRNRRTVNRAYGGVLSGSAVRERFV 92

The following BLAST results are available for this feature:

BLAST of Csor.00g312920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41098	5.1e-52	95.58	60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1	[more]
Q42351	4.3e-51	91.15	60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1	[more]
Q9FE65	2.1e-50	91.96	60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1	[more]
P40590	2.1e-50	92.04	60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1	[more]
Q9LJW6	1.4e-49	91.15	60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1	[more]

BLAST of Csor.00g312920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578587.1	1.17e-102	100.00	60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022939767.1	6.93e-69	99.13	60S ribosomal protein L34 [Cucurbita moschata] >KAG7016140.1 60S ribosomal prote...	[more]
XP_023550590.1	9.84e-69	98.26	60S ribosomal protein L34 [Cucurbita pepo subsp. pepo]	[more]
XP_022993685.1	1.07e-67	98.23	60S ribosomal protein L34 [Cucurbita maxima]	[more]
XP_038889603.1	3.08e-67	98.23	60S ribosomal protein L34 [Benincasa hispida]	[more]

BLAST of Csor.00g312920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHR3	3.36e-69	99.13	60S ribosomal protein L34 OS=Cucurbita moschata OX=3662 GN=LOC111445551 PE=3 SV=...	[more]
A0A6J1JZ78	5.20e-68	98.23	60S ribosomal protein L34 OS=Cucurbita maxima OX=3661 GN=LOC111489604 PE=3 SV=1	[more]
A0A068TVQ9	2.12e-67	97.35	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00032233001 PE=3 ...	[more]
A0A6P6V549	2.12e-67	97.35	60S ribosomal protein L34 OS=Coffea arabica OX=13443 GN=LOC113717585 PE=3 SV=1	[more]
A0A6P6UY28	2.12e-67	97.35	60S ribosomal protein L34-like OS=Coffea arabica OX=13443 GN=LOC113715348 PE=3 S...	[more]

BLAST of Csor.00g312920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26880.1	3.1e-52	91.15	Ribosomal protein L34e superfamily protein	[more]
AT1G69620.1	1.5e-51	91.96	ribosomal protein L34	[more]
AT3G28900.1	9.9e-51	91.15	Ribosomal protein L34e superfamily protein	[more]
AT1G26880.2	4.6e-40	91.76	Ribosomal protein L34e superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008195	Ribosomal protein L34Ae	PRINTS	PR01250	RIBOSOMALL34	coord: 49..62 score: 59.18 coord: 62..79 score: 50.4 coord: 102..124 score: 45.34 coord: 80..90 score: 50.0
IPR008195	Ribosomal protein L34Ae	PFAM	PF01199	Ribosomal_L34e	coord: 43..132 e-value: 5.5E-33 score: 113.1
IPR008195	Ribosomal protein L34Ae	PANTHER	PTHR10759	60S RIBOSOMAL PROTEIN L34	coord: 43..156
None	No IPR available	GENE3D	6.20.370.70		coord: 42..73 e-value: 7.1E-15 score: 56.5
None	No IPR available	GENE3D	6.20.340.10		coord: 75..158 e-value: 7.3E-36 score: 124.0
None	No IPR available	PANTHER	PTHR10759:SF14	SUBFAMILY NOT NAMED	coord: 43..156
IPR018065	Ribosomal protein L34e, conserved site	PROSITE	PS01145	RIBOSOMAL_L34E	coord: 51..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g312920.m01	Csor.00g312920.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome