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Csor.00g312840 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codonsinglepolypeptidestop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTGACAATGGATTTGAACCCGACCAATACATGAGGAAGAGGATTGTACTTATGCATGTGAAGTGCGGGGTGATGGTTGATGCCTGTAGACTGTTCGATGAAATGCTCGAAAGGGATGCGGCTTTGTGGAACGAGTATTCTAATTGTACTTCAGAGCAAACGTCATTGCAGATTGTGCAGAGAAATCGCGTTTGTGGTGACTGCGATTCTGCGATCAAGATGATTGCTAAGATAACCAAACGTGAAATGGTGATCAGAGATGCTAGCAGATTCCATCGTTTCAGAGACGGGAGTTGTTGCTCTTTTGGAGACTAA ATGATTGACAATGGATTTGAACCCGACCAATACATGAGGAAGAGGATTGTACTTATGCATGTGAAGTGCGGGGTGATGGTTGATGCCTGTAGACTGTTCGATGAAATGCTCGAAAGGGATGCGGCTTTGTGGAACGAGTATTCTAATTGTACTTCAGAGCAAACGTCATTGCAGATTGTGCAGAGAAATCGCGTTTGTGGTGACTGCGATTCTGCGATCAAGATGATTGCTAAGATAACCAAACGTGAAATGGTGATCAGAGATGCTAGCAGATTCCATCGTTTCAGAGACGGGAGTTGTTGCTCTTTTGGAGACTAA ATGATTGACAATGGATTTGAACCCGACCAATACATGAGGAAGAGGATTGTACTTATGCATGTGAAGTGCGGGGTGATGGTTGATGCCTGTAGACTGTTCGATGAAATGCTCGAAAGGGATGCGGCTTTGTGGAACGAGTATTCTAATTGTACTTCAGAGCAAACGTCATTGCAGATTGTGCAGAGAAATCGCGTTTGTGGTGACTGCGATTCTGCGATCAAGATGATTGCTAAGATAACCAAACGTGAAATGGTGATCAGAGATGCTAGCAGATTCCATCGTTTCAGAGACGGGAGTTGTTGCTCTTTTGGAGACTAA MIDNGFEPDQYMRKRIVLMHVKCGVMVDACRLFDEMLERDAALWNEYSNCTSEQTSLQIVQRNRVCGDCDSAIKMIAKITKREMVIRDASRFHRFRDGSCCSFGD Homology
BLAST of Csor.00g312840 vs. ExPASy Swiss-Prot
Match: Q9SMZ2 (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H53 PE=3 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.4e-10 Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 0
BLAST of Csor.00g312840 vs. ExPASy Swiss-Prot
Match: Q9FK33 (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H58 PE=2 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 4.2e-10 Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 0
HSP 2 Score: 61.2 bits (147), Expect = 7.9e-09 Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0
BLAST of Csor.00g312840 vs. ExPASy Swiss-Prot
Match: Q9M4P3 (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DYW10 PE=2 SV=3) HSP 1 Score: 64.3 bits (155), Expect = 9.3e-10 Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 0
BLAST of Csor.00g312840 vs. ExPASy Swiss-Prot
Match: Q9FK93 (Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana OX=3702 GN=EMB2744 PE=1 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.2e-09 Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 0
BLAST of Csor.00g312840 vs. ExPASy Swiss-Prot
Match: O81767 (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana OX=3702 GN=EMB2758 PE=3 SV=2) HSP 1 Score: 63.5 bits (153), Expect = 1.6e-09 Identity = 28/55 (50.91%), Postives = 42/55 (76.36%), Query Frame = 0
BLAST of Csor.00g312840 vs. NCBI nr
Match: KAG6578579.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 223 bits (568), Expect = 1.45e-73 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0
BLAST of Csor.00g312840 vs. NCBI nr
Match: XP_038890391.1 (pentatricopeptide repeat-containing protein At5g50390, chloroplastic isoform X2 [Benincasa hispida]) HSP 1 Score: 85.1 bits (209), Expect = 1.30e-16 Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 0
BLAST of Csor.00g312840 vs. NCBI nr
Match: XP_038890388.1 (pentatricopeptide repeat-containing protein At5g50390, chloroplastic isoform X1 [Benincasa hispida] >XP_038890389.1 pentatricopeptide repeat-containing protein At5g50390, chloroplastic isoform X1 [Benincasa hispida] >XP_038890390.1 pentatricopeptide repeat-containing protein At5g50390, chloroplastic isoform X1 [Benincasa hispida]) HSP 1 Score: 85.1 bits (209), Expect = 1.32e-16 Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 0
BLAST of Csor.00g312840 vs. NCBI nr
Match: KAA0039490.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK15245.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 84.3 bits (207), Expect = 2.45e-16 Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 0
BLAST of Csor.00g312840 vs. NCBI nr
Match: XP_008459324.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Cucumis melo] >XP_008459325.1 PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Cucumis melo]) HSP 1 Score: 84.3 bits (207), Expect = 2.46e-16 Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 0
BLAST of Csor.00g312840 vs. ExPASy TrEMBL
Match: A0A5A7T8C6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00190 PE=3 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 1.18e-16 Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 0
BLAST of Csor.00g312840 vs. ExPASy TrEMBL
Match: A0A1S3C9W7 (pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498490 PE=3 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 1.19e-16 Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 0
BLAST of Csor.00g312840 vs. ExPASy TrEMBL
Match: A0A6J1BWH3 (pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006324 PE=3 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 1.62e-16 Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 0
BLAST of Csor.00g312840 vs. ExPASy TrEMBL
Match: A0A1S4AIH4 (pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like OS=Nicotiana tabacum OX=4097 GN=LOC107798035 PE=3 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 4.13e-16 Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 0
BLAST of Csor.00g312840 vs. ExPASy TrEMBL
Match: A0A0A0KXD9 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G636580 PE=3 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 1.05e-15 Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 0
BLAST of Csor.00g312840 vs. TAIR 10
Match: AT4G33170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 67.0 bits (162), Expect = 1.0e-11 Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 0
BLAST of Csor.00g312840 vs. TAIR 10
Match: AT5G50390.1 (Pentatricopeptide repeat (PPR-like) superfamily protein ) HSP 1 Score: 65.5 bits (158), Expect = 3.0e-11 Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 0
HSP 2 Score: 61.2 bits (147), Expect = 5.6e-10 Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0
BLAST of Csor.00g312840 vs. TAIR 10
Match: AT4G16835.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 64.3 bits (155), Expect = 6.6e-11 Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 0
BLAST of Csor.00g312840 vs. TAIR 10
Match: AT5G39680.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 63.9 bits (154), Expect = 8.7e-11 Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 0
BLAST of Csor.00g312840 vs. TAIR 10
Match: AT4G33990.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10 Identity = 28/55 (50.91%), Postives = 42/55 (76.36%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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