Csor.00g311900 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g311900
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUbiquinol-cytochrome c reductase
LocationCsor_Chr15: 846119 .. 848674 (+)
RNA-Seq ExpressionCsor.00g311900
SyntenyCsor.00g311900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACAAAAAGTAGTATTTCCATGTCGAGCCTGGAGGTTCAAATAGTTGGGCCGCTCAAGATAAATGGGCCGAGATTAGGATCTGGGGCTCGGGTTGCGATCCACTACAGGCCCATATATTCAAGCGTGATAAATGGGCCGAGATTAGGATCTGAGGCTCGGGTTGCGATCCGCTATAGGCCCATATATTCAAGCGTGATAAATGGGCCGAGATTAGGATCTGAGGCTCGGGTTGCGATCCGCTATAGGCCCATATATTCAAGCGACCTTAATTATCCCATGTTTCATCGTACGTAAATCTGTTCGTATATATTGAAAAGTTAAATGACTATTTTGCCCTCTTACAATGTAGGAAAAAAGAATAGAATGGAGAAGAATATTGTCAATCAATCACGATGACACGTGGAGAATTCTGATTTGGAAAAGGTGAAGTCCACCTCATCAGAAGAATCAGACGGTCGAAAATTGATTCCCGATTGATATGGTGGGTAGAACCGAATTCTTCTTATAAAAACTTCATGGTTTTTGTATTAGGTTTACCATTAGAATTGGAAGAGGAATTCAGAGAGAAAAAATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGCCCGGGACGCCGTTTCCAATCCACGGACATCCAAGCCGCCGCCGGCTGGGGTGTCGCCGCTGCAACAACTGCTCTGTGGGTCGTTCAGGTTTTCTCCTTCCCTAAATTCATTGATCTGTACTATTATTTCTGGTTTTCGGAGATTTATGTAGTGAATTTTTTGACTCTCTATGTTAGAATAAAGGATGCATCGATCTTCTTGAAAGTTGATTCTTGATTCCGTTAACGATTTCTATTTCTAGTCTTGGACGATTTACCGTAGCGTGTTTGTGATTTCTATGTTCACAATTCATCTTTGACTTATTTTGCCACCAGCGTTAATTTTGGTTACGGGATTAGATATCATTTTCAGCTGGCCATTCGCAGTTGAGATCTGGAAGAAATGTATTCCTATGATCTATGGTGTCTATGGGCAATACGTATCGTGAGGATCTGAGAGAGCTATTTATTTATTTATATTTGTTTTCTTTTACTATTTTCTTCTCTTTCGTCATTGATCGAGCACAAGATTATACTGGCCCTGTCGGAACTCTTTTTGAATTATCAAGCCTCTCAGGGTTTCTTCACACCGTGTTTTCGAAAAGCATATTTGTGTGTATATCTATGTGTTCGGTAATCATTTCTTATTTTTCTCTCTAGTATGAAGCAAATTGAAAACAAAGATTAGGAGATTTATTTTCTCTTCCAAGTTCAAAACATTCTCCGATGGGATCAGAATGAAGTAACCATGCCGCCAAAGACATGCCCTTTCATAGAATGACAACATTTGGATGTAGTTGCTTTACATTGAATGTCTCAATATAGATCTTGTTCAAGTAACGTCGTATCTCTCTATATAAAACACCATATTAGGCCTTGAATCTCTCGTGTTTCTAAAAATTTGTAGTAGGTCATTATCTGTGGCTTGACGTCTTGCCATCCCCATGATCACACTCTCTGGTTCCACATTGAAAGTGTGGTATACTTCCGAATCCAGTCCCAAGTTCAATTAACTTCAATGTTATGGAGCTTTTAGCTGCCTCACGGAGGCTGGCGATCCTACCTGTGGAATAGTCTTGATCCTCTACCCCCCTGCTGTTTCTACAGTCCTTCCCTCGTCCCATAGTTTCATCACTGTAATTGGCTTCTACCTTTGGTTTAATCCAGTAGTGAACTTTCCAGTAACTGGTGCAAATTTCCAGTGATTCTGCCGTTCAAAATCCTAATCCTGACTGCCATCAAGACTATCAATCACTCCTTGGATCTGGCACTCATTTTGCATCTAAGTATTGGCATGCTCAAAACATGTTCTTTCTATTTCATTTTTTTATCGAATCACCTTCTCTCACAATGTTACAATGTTTCTTTCTAGCATAGGAAGCTTTATAAGCCTCTCCGTAGGGTAAAGACCACACTGCATTTCTGCTATTATCAAACTCAAATTTGATCTTCCTTCTATCAACCAATCATATGTTTTATCCACTTTCTACTTTCATCTAGGAATCCCCAAAATTGGAGGGCTCATGCCAAAGCTGATAGGGCCCATACAATTGGATTTAAGTTTTGACAATTAATGTCAATCTCAATTGGAAATGCTATGCTGTGTGCTAGAAAAAGACATAATTCTGTACATTGTTCCTAATTGTCTCAAGAGGCTGCAACCAAACTAAATTGTTTTGAGTTTTGAAATATTCATTCTCGTTCAAACAGTTGGCTTCAATTGATTCTGTACCGTGCTATTTTCTTTGTTGATAAAAAGGGTTTTTTCTTTTTTGTGTTATGCTGGAGATTTCAGTACCATTATATATCTATCTGTAGAGAATTAAGTGTATACAATCATTCCTCTTTCTTAGTACCATTAATATGTTTCGAATCTAACCATTCCCTTTTCTCTTTTGAAAAAACCCTGTGCAGCCATTCGACTGGATCAAGAAAACGTTCTTCGACAAGCCACAAGAGGCATAA

mRNA sequence

ATGGCTACAAAAAGTAGTATTTCCATGTCGAGCCTGGAGGTTCAAATAGTTGGGCCGCTCAAGATAAATGGGCCGAGATTAGGATCTGGGGCTCGGGTTGCGATCCACTACAGGCCCATATATTCAAGCGTGATAAATGGGCCGAGATTAGGATCTGAGGCTCGGGTTGCGATCCGCTATAGGCCCATATATTCAAGCGTGATAAATGGGCCGAGATTAGGATCTGAGGCTCGGGAAAAAAGAATAGAATGGAGAAGAATATTGTCAATCAATCACGATGACACGTGGAGAATTCTGATTTGGAAAAGGTTTACCATTAGAATTGGAAGAGGAATTCAGAGAGAAAAAATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGCCCGGGACGCCGTTTCCAATCCACGGACATCCAAGCCGCCGCCGGCTGGGGTGTCGCCGCTGCAACAACTGCTCTGTGGGTCGTTCAGCCATTCGACTGGATCAAGAAAACGTTCTTCGACAAGCCACAAGAGGCATAA

Coding sequence (CDS)

ATGGCTACAAAAAGTAGTATTTCCATGTCGAGCCTGGAGGTTCAAATAGTTGGGCCGCTCAAGATAAATGGGCCGAGATTAGGATCTGGGGCTCGGGTTGCGATCCACTACAGGCCCATATATTCAAGCGTGATAAATGGGCCGAGATTAGGATCTGAGGCTCGGGTTGCGATCCGCTATAGGCCCATATATTCAAGCGTGATAAATGGGCCGAGATTAGGATCTGAGGCTCGGGAAAAAAGAATAGAATGGAGAAGAATATTGTCAATCAATCACGATGACACGTGGAGAATTCTGATTTGGAAAAGGTTTACCATTAGAATTGGAAGAGGAATTCAGAGAGAAAAAATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGCCCGGGACGCCGTTTCCAATCCACGGACATCCAAGCCGCCGCCGGCTGGGGTGTCGCCGCTGCAACAACTGCTCTGTGGGTCGTTCAGCCATTCGACTGGATCAAGAAAACGTTCTTCGACAAGCCACAAGAGGCATAA

Protein sequence

MATKSSISMSSLEVQIVGPLKINGPRLGSGARVAIHYRPIYSSVINGPRLGSEARVAIRYRPIYSSVINGPRLGSEAREKRIEWRRILSINHDDTWRILIWKRFTIRIGRGIQREKMAGESTLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQPFDWIKKTFFDKPQEA
Homology
[Close]
BLAST of Csor.00g311900 vs. ExPASy Swiss-Prot
Match: P48505 (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-13
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 0 

Query: 118 AGESTLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQPFDWIKKTFFDKPQE 173
           A  + LFKFL P  R QSTDIQAAAGWGVAA T ALWV+QP+D+++KTF +K +E
Sbjct: 6   AAGNGLFKFLRPKLRPQSTDIQAAAGWGVAAVTGALWVIQPWDFLRKTFIEKQEE 60

[Close]
BLAST of Csor.00g311900 vs. ExPASy Swiss-Prot
Match: Q94K78 (Cytochrome b-c1 complex subunit 10, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRY PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.4e-12
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 0 

Query: 117 MAGESTLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQPFDWIKKTFFDKP 171
           MAG S L   + P  + Q+ DIQAAAGWG+AAA  A+WVVQPF WIKKTF D P
Sbjct: 1   MAGTSGLLNAVKP--KIQTIDIQAAAGWGIAAAAGAIWVVQPFGWIKKTFIDPP 52

[Close]
BLAST of Csor.00g311900 vs. NCBI nr
Match: KAG6578485.1 (hypothetical protein SDJN03_22933, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 348 bits (893), Expect = 6.36e-121
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0 

Query: 1   MATKSSISMSSLEVQIVGPLKINGPRLGSGARVAIHYRPIYSSVINGPRLGSEARVAIRY 60
           MATKSSISMSSLEVQIVGPLKINGPRLGSGARVAIHYRPIYSSVINGPRLGSEARVAIRY
Sbjct: 1   MATKSSISMSSLEVQIVGPLKINGPRLGSGARVAIHYRPIYSSVINGPRLGSEARVAIRY 60

Query: 61  RPIYSSVINGPRLGSEAREKRIEWRRILSINHDDTWRILIWKRFTIRIGRGIQREKMAGE 120
           RPIYSSVINGPRLGSEAREKRIEWRRILSINHDDTWRILIWKRFTIRIGRGIQREKMAGE
Sbjct: 61  RPIYSSVINGPRLGSEAREKRIEWRRILSINHDDTWRILIWKRFTIRIGRGIQREKMAGE 120

Query: 121 STLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQPFDWIKKTFFDKPQEA 173
           STLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQPFDWIKKTFFDKPQEA
Sbjct: 121 STLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQPFDWIKKTFFDKPQEA 173

[Close]
BLAST of Csor.00g311900 vs. NCBI nr
Match: KAF3433259.1 (hypothetical protein FNV43_RR24361 [Rhamnella rubrinervis])

HSP 1 Score: 93.6 bits (231), Expect = 2.65e-21
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 117 MAGESTLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQPFDWIKKTFFDKPQ 171
           MAGE+ LFKFL+P RR QSTDIQAA  WGVAA TTALW+VQPFDW++KTFF+KP+
Sbjct: 23  MAGEAGLFKFLNPRRRPQSTDIQAAGMWGVAATTTALWIVQPFDWLRKTFFEKPE 77

[Close]
BLAST of Csor.00g311900 vs. NCBI nr
Match: ABK93367.1 (unknown [Populus trichocarpa] >ABK93644.1 unknown [Populus trichocarpa] >ABK95450.1 unknown [Populus trichocarpa] >ABK96046.1 unknown [Populus trichocarpa] >PNS90741.1 hypothetical protein POPTR_019G059500 [Populus trichocarpa])

HSP 1 Score: 91.3 bits (225), Expect = 7.39e-21
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 117 MAGESTLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQPFDWIKKTFFDK 169
           MAGE+ +FKFLSP  R QSTDIQ AA WGVAA TTALW+VQPFDWIKKTFF+K
Sbjct: 1   MAGENAMFKFLSPRLRLQSTDIQTAAFWGVAAGTTALWLVQPFDWIKKTFFEK 53

[Close]
BLAST of Csor.00g311900 vs. NCBI nr
Match: KAB2026486.1 (hypothetical protein ES319_D06G222600v1 [Gossypium barbadense] >KAG4143421.1 hypothetical protein ERO13_D06G187000v2 [Gossypium hirsutum] >KJB67953.1 hypothetical protein B456_010G219300 [Gossypium raimondii] >TYG66033.1 hypothetical protein ES288_D06G235200v1 [Gossypium darwinii] >TYH68160.1 hypothetical protein ES332_D06G239100v1 [Gossypium tomentosum] >TYI78599.1 hypothetical protein E1A91_D06G224000v1 [Gossypium mustelinum])

HSP 1 Score: 88.6 bits (218), Expect = 7.97e-20
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 117 MAGESTLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQPFDWIKKTFFDKPQ 171
           MAGE  LFKFL PG+R Q  D+QAAA WGVAA T ALW++QPFDW+KKTF +KP+
Sbjct: 1   MAGERALFKFLKPGQRLQPADVQAAAMWGVAATTGALWLIQPFDWLKKTFLEKPE 55

[Close]
BLAST of Csor.00g311900 vs. NCBI nr
Match: KAB2078920.1 (hypothetical protein ES319_A06G195400v1 [Gossypium barbadense] >KAG4196580.1 hypothetical protein ERO13_A06G180100v2 [Gossypium hirsutum] >TYH14430.1 hypothetical protein ES288_A06G220000v1 [Gossypium darwinii] >TYI24175.1 hypothetical protein ES332_A06G215300v1 [Gossypium tomentosum] >TYJ31418.1 hypothetical protein E1A91_A06G196600v1 [Gossypium mustelinum])

HSP 1 Score: 88.6 bits (218), Expect = 7.97e-20
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 117 MAGESTLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQPFDWIKKTFFDKPQ 171
           MAGE  LFKFL PG+R Q  D+QAAA WGVAA T ALW++QPFDW+KKTF +KP+
Sbjct: 1   MAGERALFKFLKPGQRLQPADVQAAAMWGVAATTGALWLIQPFDWLKKTFLEKPE 55

[Close]
BLAST of Csor.00g311900 vs. ExPASy TrEMBL
Match: A9PAG4 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G059500 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.58e-21
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 117 MAGESTLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQPFDWIKKTFFDK 169
           MAGE+ +FKFLSP  R QSTDIQ AA WGVAA TTALW+VQPFDWIKKTFF+K
Sbjct: 1   MAGENAMFKFLSPRLRLQSTDIQTAAFWGVAAGTTALWLVQPFDWIKKTFFEK 53

[Close]
BLAST of Csor.00g311900 vs. ExPASy TrEMBL
Match: A0A0D2SX41 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G219300 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.86e-20
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 117 MAGESTLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQPFDWIKKTFFDKPQ 171
           MAGE  LFKFL PG+R Q  D+QAAA WGVAA T ALW++QPFDW+KKTF +KP+
Sbjct: 1   MAGERALFKFLKPGQRLQPADVQAAAMWGVAATTGALWLIQPFDWLKKTFLEKPE 55

[Close]
BLAST of Csor.00g311900 vs. ExPASy TrEMBL
Match: A0A5D2KMT9 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D06G239100v1 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.86e-20
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 117 MAGESTLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQPFDWIKKTFFDKPQ 171
           MAGE  LFKFL PG+R Q  D+QAAA WGVAA T ALW++QPFDW+KKTF +KP+
Sbjct: 1   MAGERALFKFLKPGQRLQPADVQAAAMWGVAATTGALWLIQPFDWLKKTFLEKPE 55

[Close]
BLAST of Csor.00g311900 vs. ExPASy TrEMBL
Match: A0A5D2Q9E3 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A06G215300v1 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.86e-20
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 117 MAGESTLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQPFDWIKKTFFDKPQ 171
           MAGE  LFKFL PG+R Q  D+QAAA WGVAA T ALW++QPFDW+KKTF +KP+
Sbjct: 1   MAGERALFKFLKPGQRLQPADVQAAAMWGVAATTGALWLIQPFDWLKKTFLEKPE 55

[Close]
BLAST of Csor.00g311900 vs. ExPASy TrEMBL
Match: A0A5J5VGI3 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A06G195400v1 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.86e-20
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 117 MAGESTLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQPFDWIKKTFFDKPQ 171
           MAGE  LFKFL PG+R Q  D+QAAA WGVAA T ALW++QPFDW+KKTF +KP+
Sbjct: 1   MAGERALFKFLKPGQRLQPADVQAAAMWGVAATTGALWLIQPFDWLKKTFLEKPE 55

[Close]
BLAST of Csor.00g311900 vs. TAIR 10
Match: AT2G40765.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 32 Blast hits to 32 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.0 bits (175), Expect = 5.2e-13
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 0 

Query: 117 MAGESTLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQPFDWIKKTFFDKP 171
           MAG S L   + P  + Q+ DIQAAAGWG+AAA  A+WVVQPF WIKKTF D P
Sbjct: 1   MAGTSGLLNAVKP--KIQTIDIQAAAGWGIAAAAGAIWVVQPFGWIKKTFIDPP 52

The following BLAST results are available for this feature:
BLAST of Csor.00g311900 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P485051.8e-1365.45Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum OX... [more]
Q94K787.4e-1262.96Cytochrome b-c1 complex subunit 10, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
BLAST of Csor.00g311900 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6578485.16.36e-121100.00hypothetical protein SDJN03_22933, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF3433259.12.65e-2176.36hypothetical protein FNV43_RR24361 [Rhamnella rubrinervis][more]
ABK93367.17.39e-2179.25unknown [Populus trichocarpa] >ABK93644.1 unknown [Populus trichocarpa] >ABK9545... [more]
KAB2026486.17.97e-2069.09hypothetical protein ES319_D06G222600v1 [Gossypium barbadense] >KAG4143421.1 hyp... [more]
KAB2078920.17.97e-2069.09hypothetical protein ES319_A06G195400v1 [Gossypium barbadense] >KAG4196580.1 hyp... [more]
BLAST of Csor.00g311900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A9PAG43.58e-2179.25Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G059500 PE=2 ... [more]
A0A0D2SX413.86e-2069.09Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G219300 PE=4 ... [more]
A0A5D2KMT93.86e-2069.09Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D06G239100v1 P... [more]
A0A5D2Q9E33.86e-2069.09Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A06G215300v1 P... [more]
A0A5J5VGI33.86e-2069.09Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A06G195400v1 PE... [more]
BLAST of Csor.00g311900 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G40765.15.2e-1362.96unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g311900.m01Csor.00g311900.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane