Csor.00g311840 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g311840
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	40S ribosomal protein S26
Location	Csor_Chr15: 814027 .. 815466 (-)
RNA-Seq Expression	Csor.00g311840
Synteny	Csor.00g311840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAACCTGATCTCTCACCACTCTGCTTCGATCCTTCGTTTTCGGTTAATAATTTTCTTGACAATCTCTCTTTTGGTTCAGACTTTCAAGCGTAGGAATGGTGGACGCAACAAGCACGGACGCGGACACGTGAAATTTATCCGCTGCTCCAACTGCGGAAAATGCTGCCCCAAGGTACCTAGGGTTTTCTTTTTCCTCTTTCGCTGTTCAATCTATTCGTATATCTTTGGCGTCGACGTTGCTCTCTTTTTTTATCTATATCTGCTGAACAATATATAGCCATCTGAAATTCTTTCGCGACGCATTTACAATTTAGTAACTACGGATTTGGTCACATCATTGAACTAAAAAGCGAGCAATTCACCGCCGGTTTTTTACTTTTCCTGTTTCGTTGTTGGTATTCTTGGTCTATTTTGTGTTCTAAAGGCTGAGACTCATCAAATGCAATTATCTTTGGGATTTTTGTTCACTGTTTGGTACAGAGTATCTGATTATGTGATCTCTTATTGGCTTGAATAGGACAAGGCCATCAAAAGGTTCCTTGTTAGGAACATTGTGGAGCAGGCAGCTGTTAGAGATGTTCAGGAAGCCTGTGTCTATGATCGTATGAGCCTTTTTCTTGAACGCGTTCTTTCTTTGTCTTCCATTTTAACAATTCGAGTGTAATTTTGATATTTGTTTTGTTTCAGAATACACTCTTCCTAAGCTATATGCCAAGATGCAGTACTGTGTTTCTTGTGCAATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGCTTCATTAGACGCAGGGTATATCTTGCTATCCACTCTCATTTTGCTATGATTAATTATGCAAGTCCATATGGGATATTTTGTTTTTTCTCTTCCATTATATTCATCTTTTCTAGCTTTCGCAGATGCATGATTAGAGTATCAACAATAATTTTTTGCGATGTGAATGATAAGAATTGACTCTTGAGTTATGTAATAACTGTCGTTACCCAGAGTTATAGGTCGATGCTTTAGCCTATTGTTTATCATTGTGGTTATTCTAACCACGATTATGTAGCCTTGAAGATTCCATGGGTAACGATTTGTTATCTTGCTGTCTCATATGTCTTTTTGGACACGGCCCTTTTTTAAAAAAAATCTCACAATTCAAAAATTTGGAGATTGCTATTTTGTTTACATGGTAGTTAAGTTTGCTGTTTTTTTAGTTTGATATATGCATTATTTATGGTTGTGCGTAGCTGCTCACTAGTTATGAATCCGTTTCTCTTGCTTCTCACGAGTACAAATCCATATTGTTTGTTCTTATTTGGTTGAACTCTGTCCATGTTTTCTCAGGAAGATGCACCAAAGCCTGGACAGCCAGGACAGGCTCCCCGCGTTGGAGCTGGCCCTGGAGCTCCACCCCGTGCTTGA

mRNA sequence

ATGACTTTCAAGCGTAGGAATGGTGGACGCAACAAGCACGGACGCGGACACGTGAAATTTATCCGCTGCTCCAACTGCGGAAAATGCTGCCCCAAGGACAAGGCCATCAAAAGGTTCCTTGTTAGGAACATTGTGGAGCAGGCAGCTGTTAGAGATGTTCAGGAAGCCTGTGTCTATGATCAATACACTCTTCCTAAGCTATATGCCAAGATGCAGTACTGTGTTTCTTGTGCAATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGCTTCATTAGACGCAGGGAAGATGCACCAAAGCCTGGACAGCCAGGACAGGCTCCCCGCGTTGGAGCTGGCCCTGGAGCTCCACCCCGTGCTTGA

Coding sequence (CDS)

ATGACTTTCAAGCGTAGGAATGGTGGACGCAACAAGCACGGACGCGGACACGTGAAATTTATCCGCTGCTCCAACTGCGGAAAATGCTGCCCCAAGGACAAGGCCATCAAAAGGTTCCTTGTTAGGAACATTGTGGAGCAGGCAGCTGTTAGAGATGTTCAGGAAGCCTGTGTCTATGATCAATACACTCTTCCTAAGCTATATGCCAAGATGCAGTACTGTGTTTCTTGTGCAATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGCTTCATTAGACGCAGGGAAGATGCACCAAAGCCTGGACAGCCAGGACAGGCTCCCCGCGTTGGAGCTGGCCCTGGAGCTCCACCCCGTGCTTGA

Protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRVGAGPGAPPRA

Homology

[Close]

BLAST of Csor.00g311840 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.3e-55
Identity = 108/130 (83.08%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+ED PKP QPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRP 120

Query: 121 GAGPGAPPRA 131
             G  A PRA
Sbjct: 121 AGGAPAAPRA 130

[Close]

BLAST of Csor.00g311840 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 214.2 bits (544), Expect = 9.0e-55
Identity = 108/126 (85.71%), Postives = 113/126 (89.68%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+ED PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPR- 120

Query: 121 GAGPGA 127
            AGPGA
Sbjct: 121 PAGPGA 125

[Close]

BLAST of Csor.00g311840 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 212.6 bits (540), Expect = 2.6e-54
Identity = 109/130 (83.85%), Postives = 114/130 (87.69%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+ED PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPR- 120

Query: 121 GAGPGAPPRA 131
            AGPGA   A
Sbjct: 121 PAGPGAAAAA 129

[Close]

BLAST of Csor.00g311840 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 189.5 bits (480), Expect = 2.4e-47
Identity = 95/127 (74.80%), Postives = 106/127 (83.46%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120
            Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR R PP+RF RRRED P+  +PG     
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERF-RRREDRPQGPRPGGGAPA 120

Query: 121 GAGPGAP 128
             G  AP
Sbjct: 121 PGGAAAP 126

[Close]

BLAST of Csor.00g311840 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.4e-38
Identity = 80/118 (67.80%), Postives = 92/118 (77.97%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAP 119
           QY LPKLY K+ YC++CAIHS VVR RSR  RR R+PP RF  +R  A +PG PG  P
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRF-GQRAAAARPGAPGPRP 117

[Close]

BLAST of Csor.00g311840 vs. NCBI nr
Match: XP_022939944.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022993709.1 40S ribosomal protein S26-3-like [Cucurbita maxima] >XP_023549643.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo] >KAG6578479.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 265 bits (678), Expect = 1.54e-89
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120

Query: 121 GAGPGAPPRA 130
           GAGPGAPPRA
Sbjct: 121 GAGPGAPPRA 130

[Close]

BLAST of Csor.00g311840 vs. NCBI nr
Match: XP_038884330.1 (40S ribosomal protein S26-3-like [Benincasa hispida] >XP_038884435.1 40S ribosomal protein S26-3-like [Benincasa hispida])

HSP 1 Score: 254 bits (649), Expect = 3.94e-85
Identity = 126/130 (96.92%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR R+PPQRFIRRR+DAPKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120

Query: 121 GAGPGAPPRA 130
           GAG GAPPRA
Sbjct: 121 GAG-GAPPRA 129

[Close]

BLAST of Csor.00g311840 vs. NCBI nr
Match: XP_022923523.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022989973.1 40S ribosomal protein S26-3-like [Cucurbita maxima] >XP_023529343.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254 bits (649), Expect = 4.21e-85
Identity = 124/128 (96.88%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRR+D PKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120

Query: 121 GAGPGAPP 128
           GAG GAPP
Sbjct: 121 GAGAGAPP 128

[Close]

BLAST of Csor.00g311840 vs. NCBI nr
Match: XP_008456772.1 (PREDICTED: 40S ribosomal protein S26-3-like [Cucumis melo] >KAA0052010.1 40S ribosomal protein S26-3-like [Cucumis melo var. makuwa] >TYK04549.1 40S ribosomal protein S26-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 252 bits (643), Expect = 3.24e-84
Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR R+PPQRFIRRR+DAPKPGQPGQ PRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQNPRV 120

Query: 121 GAGPGAPPRA 130
           GAG GAPPRA
Sbjct: 121 GAG-GAPPRA 129

[Close]

BLAST of Csor.00g311840 vs. NCBI nr
Match: KAG6602587.1 (40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 252 bits (643), Expect = 3.47e-84
Identity = 123/128 (96.09%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRR+D PKPGQPG APRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGPAPRV 120

Query: 121 GAGPGAPP 128
           GAG GAPP
Sbjct: 121 GAGAGAPP 128

[Close]

BLAST of Csor.00g311840 vs. ExPASy TrEMBL
Match: A0A6J1K0V7 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111489626 PE=3 SV=1)

HSP 1 Score: 265 bits (678), Expect = 7.43e-90
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120

Query: 121 GAGPGAPPRA 130
           GAGPGAPPRA
Sbjct: 121 GAGPGAPPRA 130

[Close]

BLAST of Csor.00g311840 vs. ExPASy TrEMBL
Match: A0A6J1FIL8 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111445657 PE=3 SV=1)

HSP 1 Score: 265 bits (678), Expect = 7.43e-90
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120

Query: 121 GAGPGAPPRA 130
           GAGPGAPPRA
Sbjct: 121 GAGPGAPPRA 130

[Close]

BLAST of Csor.00g311840 vs. ExPASy TrEMBL
Match: A0A6J1JRW7 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111487002 PE=3 SV=1)

HSP 1 Score: 254 bits (649), Expect = 2.04e-85
Identity = 124/128 (96.88%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRR+D PKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120

Query: 121 GAGPGAPP 128
           GAG GAPP
Sbjct: 121 GAGAGAPP 128

[Close]

BLAST of Csor.00g311840 vs. ExPASy TrEMBL
Match: A0A6J1E9V7 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111431192 PE=3 SV=1)

HSP 1 Score: 254 bits (649), Expect = 2.04e-85
Identity = 124/128 (96.88%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRR+D PKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120

Query: 121 GAGPGAPP 128
           GAG GAPP
Sbjct: 121 GAGAGAPP 128

[Close]

BLAST of Csor.00g311840 vs. ExPASy TrEMBL
Match: A0A5A7UA01 (40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001770 PE=3 SV=1)

HSP 1 Score: 252 bits (643), Expect = 1.57e-84
Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR R+PPQRFIRRR+DAPKPGQPGQ PRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQNPRV 120

Query: 121 GAGPGAPPRA 130
           GAG GAPPRA
Sbjct: 121 GAG-GAPPRA 129

[Close]

BLAST of Csor.00g311840 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 214.9 bits (546), Expect = 3.8e-56
Identity = 108/130 (83.08%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+ED PKP QPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRP 120

Query: 121 GAGPGAPPRA 131
             G  A PRA
Sbjct: 121 AGGAPAAPRA 130

[Close]

BLAST of Csor.00g311840 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 214.2 bits (544), Expect = 6.4e-56
Identity = 108/126 (85.71%), Postives = 113/126 (89.68%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+ED PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPR- 120

Query: 121 GAGPGA 127
            AGPGA
Sbjct: 121 PAGPGA 125

[Close]

BLAST of Csor.00g311840 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 212.6 bits (540), Expect = 1.9e-55
Identity = 109/130 (83.85%), Postives = 114/130 (87.69%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+ED PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPR- 120

Query: 121 GAGPGAPPRA 131
            AGPGA   A
Sbjct: 121 PAGPGAAAAA 129

The following BLAST results are available for this feature:

BLAST of Csor.00g311840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYK9	5.3e-55	83.08	40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1	[more]
P49206	9.0e-55	85.71	40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2	[more]
Q8LPJ7	2.6e-54	83.85	40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2	[more]
P49216	2.4e-47	74.80	40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2...	[more]
O45499	3.4e-38	67.80	40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1	[more]

BLAST of Csor.00g311840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939944.1	1.54e-89	100.00	40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022993709.1 40S riboso...	[more]
XP_038884330.1	3.94e-85	96.92	40S ribosomal protein S26-3-like [Benincasa hispida] >XP_038884435.1 40S ribosom...	[more]
XP_022923523.1	4.21e-85	96.88	40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022989973.1 40S riboso...	[more]
XP_008456772.1	3.24e-84	96.15	PREDICTED: 40S ribosomal protein S26-3-like [Cucumis melo] >KAA0052010.1 40S rib...	[more]
KAG6602587.1	3.47e-84	96.09	40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Csor.00g311840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K0V7	7.43e-90	100.00	40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111489626 PE=3 SV=1	[more]
A0A6J1FIL8	7.43e-90	100.00	40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111445657 PE=3 SV=...	[more]
A0A6J1JRW7	2.04e-85	96.88	40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111487002 PE=3 SV=1	[more]
A0A6J1E9V7	2.04e-85	96.88	40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111431192 PE=3 SV=...	[more]
A0A5A7UA01	1.57e-84	96.15	40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Csor.00g311840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56340.1	3.8e-56	83.08	Ribosomal protein S26e family protein	[more]
AT2G40590.1	6.4e-56	85.71	Ribosomal protein S26e family protein	[more]
AT2G40510.1	1.9e-55	83.85	Ribosomal protein S26e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000892	Ribosomal protein S26e	PFAM	PF01283	Ribosomal_S26e	coord: 1..106 e-value: 2.1E-54 score: 182.5
IPR000892	Ribosomal protein S26e	PANTHER	PTHR12538	40S RIBOSOMAL PROTEIN S26	coord: 1..129
IPR000892	Ribosomal protein S26e	PROSITE	PS00733	RIBOSOMAL_S26E	coord: 73..80
IPR038551	Ribosomal protein S26e superfamily	GENE3D	3.30.1740.20	Ribosomal protein S26e	coord: 1..114 e-value: 2.7E-58 score: 197.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..130
None	No IPR available	PANTHER	PTHR12538:SF16	40S RIBOSOMAL PROTEIN S26	coord: 1..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g311840.m01	Csor.00g311840.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome