Csor.00g310890 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g310890
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr11: 8519328 .. 8519609 (+)
RNA-Seq ExpressionCsor.00g310890
SyntenyCsor.00g310890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGCAACAAGCACAAGAAATCTCACTCTTCCTTCTCCTTCTTTGGCTTCTTCAAATCAAAGAGGGCTCGAAAAGGAGAGCATTATGAGCACGACGAGCTCTCGTGCCCTAGAAAGGTGTGGCCGAGCGATGCAGACAAATGCCACCGTTGGGTTGCAGAGCCTGGCATCGACCGAAAAGCTAAAGATTACATCGACAGGATCCATCGTAACCGCGTGTTGGAAACCGAACGCCAAACTGTCACAGTTGCCCCTTCGGGAACTAGAACCGACGTGTAA

mRNA sequence

ATGGGAGGCAACAAGCACAAGAAATCTCACTCTTCCTTCTCCTTCTTTGGCTTCTTCAAATCAAAGAGGGCTCGAAAAGGAGAGCATTATGAGCACGACGAGCTCTCGTGCCCTAGAAAGGTGTGGCCGAGCGATGCAGACAAATGCCACCGTTGGGTTGCAGAGCCTGGCATCGACCGAAAAGCTAAAGATTACATCGACAGGATCCATCGTAACCGCGTGTTGGAAACCGAACGCCAAACTGTCACAGTTGCCCCTTCGGGAACTAGAACCGACGTGTAA

Coding sequence (CDS)

ATGGGAGGCAACAAGCACAAGAAATCTCACTCTTCCTTCTCCTTCTTTGGCTTCTTCAAATCAAAGAGGGCTCGAAAAGGAGAGCATTATGAGCACGACGAGCTCTCGTGCCCTAGAAAGGTGTGGCCGAGCGATGCAGACAAATGCCACCGTTGGGTTGCAGAGCCTGGCATCGACCGAAAAGCTAAAGATTACATCGACAGGATCCATCGTAACCGCGTGTTGGAAACCGAACGCCAAACTGTCACAGTTGCCCCTTCGGGAACTAGAACCGACGTGTAA

Protein sequence

MGGNKHKKSHSSFSFFGFFKSKRARKGEHYEHDELSCPRKVWPSDADKCHRWVAEPGIDRKAKDYIDRIHRNRVLETERQTVTVAPSGTRTDV
Homology
BLAST of Csor.00g310890 vs. NCBI nr
Match: KAG6588556.1 (hypothetical protein SDJN03_17121, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197 bits (501), Expect = 1.01e-63
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0

Query: 1  MGGNKHKKSHSSFSFFGFFKSKRARKGEHYEHDELSCPRKVWPSDADKCHRWVAEPGIDR 60
          MGGNKHKKSHSSFSFFGFFKSKRARKGEHYEHDELSCPRKVWPSDADKCHRWVAEPGIDR
Sbjct: 1  MGGNKHKKSHSSFSFFGFFKSKRARKGEHYEHDELSCPRKVWPSDADKCHRWVAEPGIDR 60

Query: 61 KAKDYIDRIHRNRVLETERQTVTVAPSGTRTDV 93
          KAKDYIDRIHRNRVLETERQTVTVAPSGTRTDV
Sbjct: 61 KAKDYIDRIHRNRVLETERQTVTVAPSGTRTDV 93

BLAST of Csor.00g310890 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 145 bits (367), Expect = 3.26e-43
Identity = 68/98 (69.39%), Postives = 81/98 (82.65%), Query Frame = 0

Query: 1  MGGNKHKKSHSSFSFFGFFKSKRARKGEHYEH-----DELSCPRKVWPSDADKCHRWVAE 60
          MGGN+ KKSHSSFS F FFKSKR RKG+HY+H     DE+    KVWPSD DK H W+AE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60

Query: 61 PGIDRKAKDYIDRIHRNRVLETERQTVTVAPSGTRTDV 93
          PGIDRKAKDYIDRI+RNRV E+ERQTVT++P+GT+++V
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

BLAST of Csor.00g310890 vs. NCBI nr
Match: KAG6590516.1 (hypothetical protein SDJN03_15939, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142 bits (358), Expect = 7.45e-42
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = 0

Query: 1  MGGNKHKKSHSSFSFFGFFKSKRARKGEHYEH----DELSCPRKVWPSDADKCHRWVAEP 60
          MGGN+HKK+ SSFSF  FFKSKR+RKG+ Y+H    D+LS P KVWPSDADK H WVAEP
Sbjct: 1  MGGNRHKKASSSFSFLAFFKSKRSRKGDGYDHGSTWDDLSYPSKVWPSDADKHHHWVAEP 60

Query: 61 GIDRKAKDYIDRIHRNRVLETERQTVTVAPSGTRTDV 93
          GIDRKA DYI RIH +RVLET+ QTVTVAPSGT+ D+
Sbjct: 61 GIDRKADDYIKRIHLSRVLETKNQTVTVAPSGTKADM 97

BLAST of Csor.00g310890 vs. NCBI nr
Match: KGN65989.1 (hypothetical protein Csa_006868 [Cucumis sativus])

HSP 1 Score: 138 bits (347), Expect = 3.88e-40
Identity = 71/98 (72.45%), Postives = 78/98 (79.59%), Query Frame = 0

Query: 1  MGGNKHKKSH-SSFSFFGFFKSKRA-RKGEHY-EH-------DELSCPRKVWPSDADKCH 60
          MGGN+ KKSH SSFSF G FKSKR+ RKG+HY +H       ++ SCP KVWPSDADKCH
Sbjct: 1  MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCH 60

Query: 61 RWVAEPGIDRKAKDYIDRIHRNRVLETERQTVTVAPSG 88
          RWVAEPGIDRKAKDYIDRIHRNRV ET RQTVT+ P  
Sbjct: 61 RWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPES 98

BLAST of Csor.00g310890 vs. NCBI nr
Match: KGN45868.1 (hypothetical protein Csa_004803 [Cucumis sativus])

HSP 1 Score: 135 bits (339), Expect = 5.21e-39
Identity = 66/89 (74.16%), Postives = 73/89 (82.02%), Query Frame = 0

Query: 1  MGGNKHKKSHSSFSFFGFFKSKRARKGEHYEH-----DELSCPRKVWPSDADKCHRWVAE 60
          MGG+KHKKSHSSFSFF F KSK +RKG+HY+H     DE S   KVWPSD DK H WVAE
Sbjct: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIHRNRVLETERQTVTV 84
          PGIDRKAKDYIDRI+RNRV E+ERQTVT+
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTI 89

BLAST of Csor.00g310890 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 145 bits (367), Expect = 1.58e-43
Identity = 68/98 (69.39%), Postives = 81/98 (82.65%), Query Frame = 0

Query: 1  MGGNKHKKSHSSFSFFGFFKSKRARKGEHYEH-----DELSCPRKVWPSDADKCHRWVAE 60
          MGGN+ KKSHSSFS F FFKSKR RKG+HY+H     DE+    KVWPSD DK H W+AE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60

Query: 61 PGIDRKAKDYIDRIHRNRVLETERQTVTVAPSGTRTDV 93
          PGIDRKAKDYIDRI+RNRV E+ERQTVT++P+GT+++V
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

BLAST of Csor.00g310890 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 145 bits (365), Expect = 3.19e-43
Identity = 68/98 (69.39%), Postives = 81/98 (82.65%), Query Frame = 0

Query: 1  MGGNKHKKSHSSFSFFGFFKSKRARKGEHYEH-----DELSCPRKVWPSDADKCHRWVAE 60
          MGGN+ KKSHSSFS F FFKS+R RKG+HY+H     DE+    KVWPSD DK H WVAE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIHRNRVLETERQTVTVAPSGTRTDV 93
          PGIDRKAKDYIDRI+RNRV E+ERQTVT++P+GT+++V
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

BLAST of Csor.00g310890 vs. ExPASy TrEMBL
Match: A0A0A0LY99 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560730 PE=4 SV=1)

HSP 1 Score: 138 bits (347), Expect = 1.88e-40
Identity = 71/98 (72.45%), Postives = 78/98 (79.59%), Query Frame = 0

Query: 1  MGGNKHKKSH-SSFSFFGFFKSKRA-RKGEHY-EH-------DELSCPRKVWPSDADKCH 60
          MGGN+ KKSH SSFSF G FKSKR+ RKG+HY +H       ++ SCP KVWPSDADKCH
Sbjct: 1  MGGNRQKKSHNSSFSFLGLFKSKRSVRKGDHYYDHQQQGNSWEDFSCPSKVWPSDADKCH 60

Query: 61 RWVAEPGIDRKAKDYIDRIHRNRVLETERQTVTVAPSG 88
          RWVAEPGIDRKAKDYIDRIHRNRV ET RQTVT+ P  
Sbjct: 61 RWVAEPGIDRKAKDYIDRIHRNRVFETPRQTVTLPPES 98

BLAST of Csor.00g310890 vs. ExPASy TrEMBL
Match: A0A0A0K8V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 135 bits (339), Expect = 2.52e-39
Identity = 66/89 (74.16%), Postives = 73/89 (82.02%), Query Frame = 0

Query: 1  MGGNKHKKSHSSFSFFGFFKSKRARKGEHYEH-----DELSCPRKVWPSDADKCHRWVAE 60
          MGG+KHKKSHSSFSFF F KSK +RKG+HY+H     DE S   KVWPSD DK H WVAE
Sbjct: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIHRNRVLETERQTVTV 84
          PGIDRKAKDYIDRI+RNRV E+ERQTVT+
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTI 89

BLAST of Csor.00g310890 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 132 bits (332), Expect = 3.52e-38
Identity = 65/99 (65.66%), Postives = 79/99 (79.80%), Query Frame = 0

Query: 1  MGGN-KHKKSHSSFSFFGFFKSKRARKGEHYEH-----DELSCPRKVWPSDADKCHRWVA 60
          MGGN + KKSHSSFS F FFKS+R RKG++  H     DE+    KVWPSD DK H WVA
Sbjct: 1  MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIHRNRVLETERQTVTVAPSGTRTDV 93
          EPGIDRKAKDYIDRI+RNRV E+ERQT+T++P+GT+++V
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

BLAST of Csor.00g310890 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 67.4 bits (163), Expect = 6.9e-12
Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 0

Query: 1  MGGNKHKKSHSSFSFFGFFKSKRARKGE-HYEHDELSCPRKVWPSDADKCHRWVAEPGID 60
          MGG     S   FS F FFK++R+ + E     D+    RK   SD DK + WVAEPGID
Sbjct: 1  MGGKNRSHSSKRFSLFSFFKTRRSHRVEADGSWDDFGYTRKAMASDEDKRY-WVAEPGID 60

Query: 61 RKAKDYIDRIHRNRVLETERQTVT 84
          RKA  +I + H  RV E+ERQT++
Sbjct: 61 RKASAFIAKFHATRVSESERQTLS 83

BLAST of Csor.00g310890 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-09
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 0

Query: 24 ARKGEHY------EHDELSCPRKVWPSDADKCHRWVAEPGIDRKAKDYIDRIHRNRVLET 83
          AR+  H+        D++   RK W SD DK + WVAEPGIDRKA  +I + H +RV E+
Sbjct: 3  ARRSSHHRVEADASWDDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRVSES 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6588556.11.01e-63100.00hypothetical protein SDJN03_17121, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN45870.13.26e-4369.39hypothetical protein Csa_004960 [Cucumis sativus][more]
KAG6590516.17.45e-4272.16hypothetical protein SDJN03_15939, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN65989.13.88e-4072.45hypothetical protein Csa_006868 [Cucumis sativus][more]
KGN45868.15.21e-3974.16hypothetical protein Csa_004803 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0K7Y21.58e-4369.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1[more]
A0A0A0KBW13.19e-4369.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1[more]
A0A0A0LY991.88e-4072.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560730 PE=4 SV=1[more]
A0A0A0K8V32.52e-3974.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1[more]
A0A5A7SWT93.52e-3865.66Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT3G05858.16.9e-1246.43unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G26620.13.2e-0947.69unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33511:SF17RIBOSOMAL PROTEIN S12coord: 1..83
NoneNo IPR availablePANTHERPTHR33511OS06G0632400 PROTEINcoord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g310890.m01Csor.00g310890.m01mRNA