Csor.00g310780 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g310780
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	serine/arginine-rich splicing factor 11 isoform X1
Location	Csor_Chr11: 8678330 .. 8681076 (-)
RNA-Seq Expression	Csor.00g310780
Synteny	Csor.00g310780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCTCGTCTTCGTCGGCATCACCCTACACTTCCGATTCATCGTCTTCCTCTTCTCGTCGTCGCCGTCGCCGTCGCCGTAGAACTCGCCGTGAAAAAGATCGGGACGCTCTTAGGATTCGCAAGAAGTCTCGCTCTCATTCTAAGCGTCGTCGCAGGCACCGCCGCTCCTCCTCCAATTCTTTATCTTCCTCCGACTCCGAATCCGATTACTCCCGGTAACCTCAGCAACTTCAATAGTTTTTCTCCTATTATGCTTTTCCTTTGTTGTTTCTGATCTTTTGTTTCCTTGCTCCTTGTTTGATTGCTGCTGATTAGAGTTTGGATTGGGAGATTTAGGTTTTTTGAGGAACTCTGTTAAGCCTTTTCTGATTTTTTTTTTTGGTTTCCCGATTTTCTTCTGGAAGTCATGCGATTTATAGCCCTTTCTGATTTGTTCTATTTTGGCTTTCCCGATCTCTTACAGGAAGTCATGCGATTTATGTAATCTTAGTTATGATAGGTTGTTAGTGATTATTGATCGGAAAGAGAACCTTAGCTCTTGGTTCAGAATTGAAATGTATGCCTTTTTCTGTTTAGAAAGCTAAGAATTTAGGACTCATCTTGTGTATTTCCTACTCTTTTAAAAAGAAGAACAAAAATGTGATCGCGTCATGTTTTTATGTTACATTTAAGCTTTTCAATATTTATATATTTTCTTTAAATAACAATGATAAAATAATACTGTATGTTCTTGAAATAATAACCGAAACAAGAAATGAGATTCTGTTGTTTTTAAATTCGTAACAAATACAACGTTAGTAATATCTGTAATAAATGAGAAACAAAGAAACAAGAATTTAAATTTTGTTTTCTTCCCCCAAAATTTGTACACTGTGTTGGGTGCATTTGTTAGAAATGGGGACTGAGAAATATAGAATAGTTATTGAACCGTTTTATTTTTCAATGTTAGGAAACAAGTAAAAATGAAAACTTTACCAAGTGATGTAATTGCTTTCTGTTTCTTCATTGGAATTTATTTTATGTAATGGCTTAATTATGCTAGATGTACTTCATATTTTGGCTGGTTTCCTAAATTATACTTTCGAAGATCATGTTTTTCAGTGAGTGGTATGCTGGTTTCCAAGACAACTATTTTTTCATAGCACATCTCATGAACCTAAGATAGTTTTTACTTATCCTTGTATATACATGTAGAAGCCATAGCTCTTCTCAAAGCGAGCCTGAAATGTCAGGCCGTTCAAAGCGGCATAAGAAGAATGATGGAACGAAGAAGGTAGATGCTTTAAATAGTAATTTTTATCTTTGGATTTATGTGTTGGCTTTGTAGTTCCACTTGTGGATTTTCACCTTGTTATTGTCACTCTTTTTTGTGCATCTTTGTATAAGGAGAGGGAGCGAAGTAAGAGTCGTCACCATAAAAGGCGTAAGCATAAAGCTAAAGAGGTAGACCACTTGCCTGTTTGTGTACTATTTTTCCCTTTGTTGTTGTTAATGTTTTACTTTCAATGAACTGAGAAATGTTATGGAAATCACCTCGCTGGCATCATGTCTTTTACCTGTATCTACCTCTAGGCACTTCAGAACATATAGTGATAAAGTAGATGTAGCTTTTAACACATGTATTCAATGTTTTAGATTTTAATTCAGAAGAGGTGAGATGTAAGCTTCGAGGTAGTATGATAAGCCTCAGATTAAATTAAAATATAAATGAACATATTGTGATAAAGATTTTAAGAAGATATTTAAGTTTCGATCTAAAATGTTTTTTTGTCCTGGGTAGTAAAAGTATTAACAACCTGAATTACAATATAACTCAATTGTGTAAAGAATAAGCATCAAATTAATATTATTCTCCTAATCATTTCATGAGGTGTTAAGGCTCCAAGCATCAGTGTGTTCAAATAGAGCGCAAGCCCTAATTCAGAAAAACAAATTATAAAAAAAAGTAGAGGAGCAAGCCTCATGTATGCTAGGCCTAAGCATTGAGGCAAAAGATGAAAGACAAGCACGCAATCTTTAGACAAAAGATGAAAGTAATGATCTATTTGCCAAATTATCATAAGTTTTTTTAGTCATGCAATCTTTAGACTACATCTATGATTTGTTTCTGAATTGGATATAGTGTTAGACGTTTGTATGACTATTTACTGATTGATTCTTTGAACTTGGAGTTGGGGTCTGTGGCATGATGATCGGGCTGTTGATTGATTTGCCTGCTGGTTTGTTGTGCGGATTTGTCCTGGCAATCGGAGTCGATTTATAGAAACAGCCAGAAGAGAGAAGTAGCAGCCCTGTGCAGCTGTCTAAGGTTACCTTAACACCATTGTTTATTTTCAGTTCTCTTCTTTTTTGGCATCTCAAATGTCAAATTTACAGTTACTTCATGTATTTGCAGTTTTTAGCGCGGGAGGATGATGGTACTCGACGGAGTGCTGTCTCTGGCAAAAAGGTGAAAGATCTGCCTCTTCTTTCTATGTTTTGACATGTTATTGTTAAAACGTCTTTGCCTTGTCCAAAAATACTTCTCACTCATAAAATTTTGGGATTTAAAAATGATTTTGAAAAAGGTCAAATGCGAAGTGGCACAAGTACATAGAATGTTGCTGCCATTGATAATTTAGTTTTCACTATTATTATTATTTTTGCAGATATTGTTGAAACTTGATAAATCAAAGGAAGACAAAGCTGAGGAAAACAAACGAAATGAATTGCTGAAGTTCTTGAACTCTAGCTTTGACTAA

mRNA sequence

ATGGCGGCCTCGTCTTCGTCGGCATCACCCTACACTTCCGATTCATCGTCTTCCTCTTCTCGTCGTCGCCGTCGCCGTCGCCGTAGAACTCGCCGTGAAAAAGATCGGGACGCTCTTAGGATTCGCAAGAAGTCTCGCTCTCATTCTAAGCGTCGTCGCAGGCACCGCCGCTCCTCCTCCAATTCTTTATCTTCCTCCGACTCCGAATCCGATTACTCCCGAAGCCATAGCTCTTCTCAAAGCGAGCCTGAAATGTCAGGCCGTTCAAAGCGGCATAAGAAGAATGATGGAACGAAGAAGGAGAGGGAGCGAAGTAAGAGTCGTCACCATAAAAGGCGTAAGCATAAAGCTAAAGAGAAACAGCCAGAAGAGAGAAGTAGCAGCCCTGTGCAGCTGTCTAAGTTTTTAGCGCGGGAGGATGATGGTACTCGACGGAGTGCTGTCTCTGGCAAAAAGATATTGTTGAAACTTGATAAATCAAAGGAAGACAAAGCTGAGGAAAACAAACGAAATGAATTGCTGAAGTTCTTGAACTCTAGCTTTGACTAA

Coding sequence (CDS)

ATGGCGGCCTCGTCTTCGTCGGCATCACCCTACACTTCCGATTCATCGTCTTCCTCTTCTCGTCGTCGCCGTCGCCGTCGCCGTAGAACTCGCCGTGAAAAAGATCGGGACGCTCTTAGGATTCGCAAGAAGTCTCGCTCTCATTCTAAGCGTCGTCGCAGGCACCGCCGCTCCTCCTCCAATTCTTTATCTTCCTCCGACTCCGAATCCGATTACTCCCGAAGCCATAGCTCTTCTCAAAGCGAGCCTGAAATGTCAGGCCGTTCAAAGCGGCATAAGAAGAATGATGGAACGAAGAAGGAGAGGGAGCGAAGTAAGAGTCGTCACCATAAAAGGCGTAAGCATAAAGCTAAAGAGAAACAGCCAGAAGAGAGAAGTAGCAGCCCTGTGCAGCTGTCTAAGTTTTTAGCGCGGGAGGATGATGGTACTCGACGGAGTGCTGTCTCTGGCAAAAAGATATTGTTGAAACTTGATAAATCAAAGGAAGACAAAGCTGAGGAAAACAAACGAAATGAATTGCTGAAGTTCTTGAACTCTAGCTTTGACTAA

Protein sequence

MAASSSSASPYTSDSSSSSSRRRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSSNSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSRHHKRRKHKAKEKQPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD

Homology

[Close]

BLAST of Csor.00g310780 vs. NCBI nr
Match: KAG6588567.1 (hypothetical protein SDJN03_17132, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 286 bits (731), Expect = 6.20e-96
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MAASSSSASPYTSDSSSSSSRRRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60
           MAASSSSASPYTSDSSSSSSRRRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSS
Sbjct: 1   MAASSSSASPYTSDSSSSSSRRRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60

Query: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSRHHKRRKHKAKEK 120
           NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSRHHKRRKHKAKEK
Sbjct: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSRHHKRRKHKAKEK 120

Query: 121 QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS 180
           QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS
Sbjct: 121 QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS 180

Query: 181 FD 182
           FD
Sbjct: 181 FD 182

[Close]

BLAST of Csor.00g310780 vs. NCBI nr
Match: XP_023531665.1 (probable splicing factor, arginine/serine-rich 7 isoform X1 [Cucurbita pepo subsp. pepo] >KAG7022362.1 hypothetical protein SDJN02_16093 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278 bits (712), Expect = 4.54e-93
Identity = 180/182 (98.90%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MAASSSSASPYTSDSSSSSSRRRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60
           MAASSSSASPYTSDSSSSSSRRRRRRR  TRREKDRDALRIRKKSRSHSKRRRRHRRSSS
Sbjct: 1   MAASSSSASPYTSDSSSSSSRRRRRRR--TRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60

Query: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSRHHKRRKHKAKEK 120
           NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSRHHKRRKHKAKEK
Sbjct: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSRHHKRRKHKAKEK 120

Query: 121 QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS 180
           QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS
Sbjct: 121 QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS 180

Query: 181 FD 182
           FD
Sbjct: 181 FD 180

[Close]

BLAST of Csor.00g310780 vs. NCBI nr
Match: XP_022970036.1 (probable splicing factor, arginine/serine-rich 7 isoform X1 [Cucurbita maxima])

HSP 1 Score: 277 bits (708), Expect = 1.85e-92
Identity = 179/182 (98.35%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MAASSSSASPYTSDSSSSSSRRRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60
           MAASSSSASPYTSDSSSSSSRRRRRRR  TRREKDRDALRIRKKSRSHSKRRRRHRRSSS
Sbjct: 1   MAASSSSASPYTSDSSSSSSRRRRRRR--TRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60

Query: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSRHHKRRKHKAKEK 120
           NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKS+HHKRRKHKAKEK
Sbjct: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSQHHKRRKHKAKEK 120

Query: 121 QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS 180
           QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS
Sbjct: 121 QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS 180

Query: 181 FD 182
           FD
Sbjct: 181 FD 180

[Close]

BLAST of Csor.00g310780 vs. NCBI nr
Match: XP_022931719.1 (serine/arginine-rich splicing factor 11 isoform X1 [Cucurbita moschata])

HSP 1 Score: 276 bits (707), Expect = 2.62e-92
Identity = 179/182 (98.35%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MAASSSSASPYTSDSSSSSSRRRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60
           MAASSSSASPYTSDSSSSSSRRRRRRR  TRREKDR+ALRIRKKSRSHSKRRRRHRRSSS
Sbjct: 1   MAASSSSASPYTSDSSSSSSRRRRRRR--TRREKDRNALRIRKKSRSHSKRRRRHRRSSS 60

Query: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSRHHKRRKHKAKEK 120
           NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSRHHKRRKHKAKEK
Sbjct: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSRHHKRRKHKAKEK 120

Query: 121 QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS 180
           QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS
Sbjct: 121 QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS 180

Query: 181 FD 182
           FD
Sbjct: 181 FD 180

[Close]

BLAST of Csor.00g310780 vs. NCBI nr
Match: XP_023531666.1 (probable splicing factor, arginine/serine-rich 7 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 272 bits (696), Expect = 1.20e-90
Identity = 179/182 (98.35%), Postives = 179/182 (98.35%), Query Frame = 0


Query: 1   MAASSSSASPYTSDSSSSSSRRRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60
           MAASSSSASPYTSDSSSSSSRRRRRRR  TRREKDRDALRIRKKSRSHSKRRRRHRRSSS
Sbjct: 1   MAASSSSASPYTSDSSSSSSRRRRRRR--TRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60

Query: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSRHHKRRKHKAKEK 120
           NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKK RERSKSRHHKRRKHKAKEK
Sbjct: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKK-RERSKSRHHKRRKHKAKEK 120

Query: 121 QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS 180
           QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS
Sbjct: 121 QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS 179

Query: 181 FD 182
           FD
Sbjct: 181 FD 179

[Close]

BLAST of Csor.00g310780 vs. ExPASy TrEMBL
Match: A0A6J1HZG5 (probable splicing factor, arginine/serine-rich 7 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469042 PE=4 SV=1)

HSP 1 Score: 277 bits (708), Expect = 8.93e-93
Identity = 179/182 (98.35%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MAASSSSASPYTSDSSSSSSRRRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60
           MAASSSSASPYTSDSSSSSSRRRRRRR  TRREKDRDALRIRKKSRSHSKRRRRHRRSSS
Sbjct: 1   MAASSSSASPYTSDSSSSSSRRRRRRR--TRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60

Query: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSRHHKRRKHKAKEK 120
           NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKS+HHKRRKHKAKEK
Sbjct: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSQHHKRRKHKAKEK 120

Query: 121 QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS 180
           QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS
Sbjct: 121 QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS 180

Query: 181 FD 182
           FD
Sbjct: 181 FD 180

[Close]

BLAST of Csor.00g310780 vs. ExPASy TrEMBL
Match: A0A6J1EV15 (serine/arginine-rich splicing factor 11 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437872 PE=4 SV=1)

HSP 1 Score: 276 bits (707), Expect = 1.27e-92
Identity = 179/182 (98.35%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MAASSSSASPYTSDSSSSSSRRRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60
           MAASSSSASPYTSDSSSSSSRRRRRRR  TRREKDR+ALRIRKKSRSHSKRRRRHRRSSS
Sbjct: 1   MAASSSSASPYTSDSSSSSSRRRRRRR--TRREKDRNALRIRKKSRSHSKRRRRHRRSSS 60

Query: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSRHHKRRKHKAKEK 120
           NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSRHHKRRKHKAKEK
Sbjct: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSRHHKRRKHKAKEK 120

Query: 121 QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS 180
           QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS
Sbjct: 121 QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS 180

Query: 181 FD 182
           FD
Sbjct: 181 FD 180

[Close]

BLAST of Csor.00g310780 vs. ExPASy TrEMBL
Match: A0A6J1I4D4 (NKAP family protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469042 PE=4 SV=1)

HSP 1 Score: 271 bits (692), Expect = 2.36e-90
Identity = 178/182 (97.80%), Postives = 179/182 (98.35%), Query Frame = 0


Query: 1   MAASSSSASPYTSDSSSSSSRRRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60
           MAASSSSASPYTSDSSSSSSRRRRRRR  TRREKDRDALRIRKKSRSHSKRRRRHRRSSS
Sbjct: 1   MAASSSSASPYTSDSSSSSSRRRRRRR--TRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60

Query: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSRHHKRRKHKAKEK 120
           NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKK RERSKS+HHKRRKHKAKEK
Sbjct: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKK-RERSKSQHHKRRKHKAKEK 120

Query: 121 QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS 180
           QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS
Sbjct: 121 QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS 179

Query: 181 FD 182
           FD
Sbjct: 181 FD 179

[Close]

BLAST of Csor.00g310780 vs. ExPASy TrEMBL
Match: A0A6J1F093 (NKAP family protein isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437872 PE=4 SV=1)

HSP 1 Score: 270 bits (691), Expect = 3.35e-90
Identity = 178/182 (97.80%), Postives = 179/182 (98.35%), Query Frame = 0


Query: 1   MAASSSSASPYTSDSSSSSSRRRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60
           MAASSSSASPYTSDSSSSSSRRRRRRR  TRREKDR+ALRIRKKSRSHSKRRRRHRRSSS
Sbjct: 1   MAASSSSASPYTSDSSSSSSRRRRRRR--TRREKDRNALRIRKKSRSHSKRRRRHRRSSS 60

Query: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSRHHKRRKHKAKEK 120
           NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKK RERSKSRHHKRRKHKAKEK
Sbjct: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKK-RERSKSRHHKRRKHKAKEK 120

Query: 121 QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS 180
           QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS
Sbjct: 121 QPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS 179

Query: 181 FD 182
           FD
Sbjct: 181 FD 179

[Close]

BLAST of Csor.00g310780 vs. ExPASy TrEMBL
Match: A0A6J1C3K8 (serine/arginine-rich splicing factor 11 OS=Momordica charantia OX=3673 GN=LOC111007940 PE=4 SV=1)

HSP 1 Score: 244 bits (622), Expect = 1.23e-79
Identity = 168/185 (90.81%), Postives = 174/185 (94.05%), Query Frame = 0


Query: 1   MAASSSSASPYTSDSSSSSSRRRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60
           MAASSSSA+ +TSDSSSSSSRRRRRRR  +RR+KDRDALRIRKKSRSHSKRRRRHRRSSS
Sbjct: 1   MAASSSSATSFTSDSSSSSSRRRRRRR--SRRDKDRDALRIRKKSRSHSKRRRRHRRSSS 60

Query: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKK--ERERSKSRHHKRRKHKAK 120
           +SLSSSDSES+YSRS SSSQSEPE SGRSKRHKKND TKK  ERERSKS HHKRRKHKAK
Sbjct: 61  DSLSSSDSESEYSRSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAK 120

Query: 121 EKQPEERSSSPVQLSKFLARE-DDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFL 180
           EKQPEERSSSPVQLSKFLARE DDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFL
Sbjct: 121 EKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFL 180

Query: 181 NSSFD 182
           NSSFD
Sbjct: 181 NSSFD 183

[Close]

BLAST of Csor.00g310780 vs. TAIR 10
Match: AT5G27860.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 131.3 bits (329), Expect = 7.7e-31
Identity = 109/185 (58.92%), Postives = 135/185 (72.97%), Query Frame = 0


Query: 1   MAASSSSASPYTSDSSSSSSRRRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60
           MAASSSS+S   S  SS S RRR+ RR   R ++DRD+L++RKKSRS SK+RRR + SS 
Sbjct: 1   MAASSSSSSSDVSSDSSDSHRRRKDRRHHRRNDRDRDSLKVRKKSRSTSKKRRRRQHSSD 60

Query: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTK--KERERSKSRHHKRRKHKAK 120
           +        SD S S SSS+S      +S+RHKK++  K  K++ERSKS  HKR K++ +
Sbjct: 61  S--------SDSSYSDSSSESSDSEHEKSRRHKKHEKPKKAKDKERSKSHRHKRHKNRER 120

Query: 121 EKQPEERSSSPVQLSKFLARE-DDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFL 180
           +K   E SS PV+LSKFL R+ DDG RRSAVSGKKILLK+DKSKEDKA E+KRNELLKFL
Sbjct: 121 KKGEGEGSSGPVKLSKFLNRDKDDGERRSAVSGKKILLKVDKSKEDKAAESKRNELLKFL 177

Query: 181 NSSFD 183
           N+SFD
Sbjct: 181 NASFD 177

[Close]

BLAST of Csor.00g310780 vs. TAIR 10
Match: AT5G27860.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 23049 Blast hits to 11981 proteins in 648 species: Archae - 2; Bacteria - 589; Metazoa - 13464; Fungi - 1977; Plants - 1635; Viruses - 89; Other Eukaryotes - 5293 (source: NCBI BLink). )

HSP 1 Score: 131.3 bits (329), Expect = 7.7e-31
Identity = 109/185 (58.92%), Postives = 135/185 (72.97%), Query Frame = 0


Query: 1   MAASSSSASPYTSDSSSSSSRRRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60
           MAASSSS+S   S  SS S RRR+ RR   R ++DRD+L++RKKSRS SK+RRR + SS 
Sbjct: 1   MAASSSSSSSDVSSDSSDSHRRRKDRRHHRRNDRDRDSLKVRKKSRSTSKKRRRRQHSSD 60

Query: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTK--KERERSKSRHHKRRKHKAK 120
           +        SD S S SSS+S      +S+RHKK++  K  K++ERSKS  HKR K++ +
Sbjct: 61  S--------SDSSYSDSSSESSDSEHEKSRRHKKHEKPKKAKDKERSKSHRHKRHKNRER 120

Query: 121 EKQPEERSSSPVQLSKFLARE-DDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFL 180
           +K   E SS PV+LSKFL R+ DDG RRSAVSGKKILLK+DKSKEDKA E+KRNELLKFL
Sbjct: 121 KKGEGEGSSGPVKLSKFLNRDKDDGERRSAVSGKKILLKVDKSKEDKAAESKRNELLKFL 177

Query: 181 NSSFD 183
           N+SFD
Sbjct: 181 NASFD 177

The following BLAST results are available for this feature:

BLAST of Csor.00g310780 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g310780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588567.1	6.20e-96	100.00	hypothetical protein SDJN03_17132, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023531665.1	4.54e-93	98.90	probable splicing factor, arginine/serine-rich 7 isoform X1 [Cucurbita pepo subs...	[more]
XP_022970036.1	1.85e-92	98.35	probable splicing factor, arginine/serine-rich 7 isoform X1 [Cucurbita maxima]	[more]
XP_022931719.1	2.62e-92	98.35	serine/arginine-rich splicing factor 11 isoform X1 [Cucurbita moschata]	[more]
XP_023531666.1	1.20e-90	98.35	probable splicing factor, arginine/serine-rich 7 isoform X2 [Cucurbita pepo subs...	[more]

BLAST of Csor.00g310780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZG5	8.93e-93	98.35	probable splicing factor, arginine/serine-rich 7 isoform X1 OS=Cucurbita maxima ...	[more]
A0A6J1EV15	1.27e-92	98.35	serine/arginine-rich splicing factor 11 isoform X1 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1I4D4	2.36e-90	97.80	NKAP family protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469042 PE=4 ...	[more]
A0A6J1F093	3.35e-90	97.80	NKAP family protein isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437872 PE=...	[more]
A0A6J1C3K8	1.23e-79	90.81	serine/arginine-rich splicing factor 11 OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of Csor.00g310780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27860.1	7.7e-31	58.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G27860.2	7.7e-31	58.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..171
None	No IPR available	PANTHER	PTHR35760	SI:CH211-22I13.2	coord: 1..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g310780.m01	Csor.00g310780.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016853	isomerase activity