Csor.00g310730 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g310730
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Csor_Chr11: 8784340 .. 8785780 (+)
RNA-Seq Expression	Csor.00g310730
Synteny	Csor.00g310730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTTCTAATTTGGAAACATGGATTCCATGCTGAAGTCTTTGTTGCCAGTGCATTGGTCGATATGTATGCGAAATGTTGCGATATGTGCACTGCTGAGAAGGTGTTTGAGGAAATGCCTGTGGGAAACCTTGTGTCTTGCAATCTACGATTGTGGGGTTCTTGCAGAACAAAGTTTATGGTTCTTGCAGATCAAAGTTTATGATCGGGCCATTTTCTCTAACTGTTCTTGATGAGGTAAGCTTTTCGAGTGCTTTAGTGTTTAGCACCATGTTGGTAACTTGGAGTTTGGGAAACAAGTTCATGGGTTTCTCTGAAGCTTGGTGTCGAGAATTTGGTTCATGTTAATAACTCGCTGATTGACATGTATGGTAAATGTGGCTTGTTTTATGATGTTGTGAAGTTGTTCTCAAATATTGGGGTTTAGAGATGTTGCGGCTAGGAATATAATGATCATGGCATGAGTTTATAGCGACAATTATAAAGGTGCCTACAATAGTTTTTGGATGATGAGGAGGAAAGGTTTAATACCTGATGATGCATCATACTCTTCTGCGCTTCATTCTTGAGAAAATCTTGCCATTATATCAGGGAACGCTTATCCATTATCAGATCGTACAATCTGGGTTTGTGAACATGTTGTGTGTTACAAGTTCTTTGGTCACAATGTATGCAAAATGCAGCAGCTTGGCAGATGTTTTTTTTGGATATTTGAAGAAACTTTTTTTTGGATATTTGAAGAAACTAAGGACGATAATGTGTTTTGTTGGACAGCCATAATTGCAACTTGTCAACAGCACGGCCATGCTAACCAGGTTGTTGAATCGTTGAAAGAAATGTTGAGAGAGGAGATTACACCTGACTACATTACTTTTATTTCTGTTCTCTCTGCTTGTAGCCACACTGGTCGGGTTGAAGAAGAATTCTTCTACTTTAATTCAATGGTTTAAGTGCATGGTAGTAACCCTGGATATGAACATTATGCGTGCATAGTTGACTTGCTTGGTCGTGCTGAGCAGTTGAATAGAGCTAAGAGGTTTATAGAACTGATGCCTATCAAACCAGAGGCAGAGTTGCTTGATCTTTATTATGTTGCATATGAGGTTAGCAACTTTAGTTATATCTTTGACATTTCTTAAAAGCATATGAGATTAGCAACTTTAGTTATATCTTTGACATTTCTTAAATCCTGAATTGCACGGTATCTTGCCTTTTTCATGTTGTGCCAAAGGCCATTGCTTTTGTTGTCTGTAAAATGAAGTTCGCTTGTAGTTGTACTAAATTGAGCAGCCTGATGAGGAAATAAGGAAAAAACATTTCTTCCTTTACAGTATATGTTGATGTCGAATGTCAATAGACAGGCGCATCCCTTGCTTTCCATGCAAGTACGCCATTACCCATACTTAAGTTTCACAATATTGACATTGCCTTCGATTTGA

mRNA sequence

ATGCATTTTCTAATTTGGAAACATGGATTCCATGCTGAAGTCTTTGTTGCCAGTGCATTGGTCGATATGTATGCGAAATGTTGCGATATGTGCACTGCTGAGAAGAACAAAGTTTATGGTTCTTGCAGATCAAAGTTTATGATCGGGCCATTTTCTCTAACTGTTCTTGATGAGGTAAGCTTTTCGAGTGCTTTAGTGTTTAGCACCATGTTGCACGGCCATGCTAACCAGGTTGTTGAATCGTTGAAAGAAATGTTGAGAGAGGAGATTACACCTGACTACATTACTTTTATTTCTGTTCTCTCTGCTTGTAGCCACACTGTTGACTTGCTTGGTCGTGCTGAGCAGTTGAATAGAGCTAAGAGGTTTATAGAACTGATGCCTATCAAACCAGAGGCAGAGTTGCTTGATCTTTATTATGTTGCATATGAGGCGCATCCCTTGCTTTCCATGCAAGTACGCCATTACCCATACTTAAGTTTCACAATATTGACATTGCCTTCGATTTGA

Coding sequence (CDS)

ATGCATTTTCTAATTTGGAAACATGGATTCCATGCTGAAGTCTTTGTTGCCAGTGCATTGGTCGATATGTATGCGAAATGTTGCGATATGTGCACTGCTGAGAAGAACAAAGTTTATGGTTCTTGCAGATCAAAGTTTATGATCGGGCCATTTTCTCTAACTGTTCTTGATGAGGTAAGCTTTTCGAGTGCTTTAGTGTTTAGCACCATGTTGCACGGCCATGCTAACCAGGTTGTTGAATCGTTGAAAGAAATGTTGAGAGAGGAGATTACACCTGACTACATTACTTTTATTTCTGTTCTCTCTGCTTGTAGCCACACTGTTGACTTGCTTGGTCGTGCTGAGCAGTTGAATAGAGCTAAGAGGTTTATAGAACTGATGCCTATCAAACCAGAGGCAGAGTTGCTTGATCTTTATTATGTTGCATATGAGGCGCATCCCTTGCTTTCCATGCAAGTACGCCATTACCCATACTTAAGTTTCACAATATTGACATTGCCTTCGATTTGA

Protein sequence

MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVSFSSALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSHTVDLLGRAEQLNRAKRFIELMPIKPEAELLDLYYVAYEAHPLLSMQVRHYPYLSFTILTLPSI

Homology

[Close]

BLAST of Csor.00g310730 vs. ExPASy Swiss-Prot
Match: Q9LW63 (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.6e-14
Identity = 53/180 (29.44%), Postives = 85/180 (47.22%), Query Frame = 0


Query: 1   MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS 60
           +H  + + GF + +F+ASALVDMY+KC ++  A   K++             + VLDEVS
Sbjct: 365 LHGYVLRGGFGSNIFIASALVDMYSKCGNIKAA--RKIFD-----------RMNVLDEVS 424

Query: 61  FSSALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSH-------------- 120
           + +A++    LHGH ++ V   +EM R+ + P+ + F++VL+ACSH              
Sbjct: 425 W-TAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSM 484

Query: 121 ---------------TVDLLGRAEQLNRAKRFIELMPIKPEAELLDLYYVAYEAHPLLSM 152
                            DLLGRA +L  A  FI  M ++P   +      +   H  L +
Sbjct: 485 TKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLEL 530

[Close]

BLAST of Csor.00g310730 vs. ExPASy Swiss-Prot
Match: Q9SVP7 (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H42 PE=2 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-13
Identity = 51/162 (31.48%), Postives = 83/162 (51.23%), Query Frame = 0


Query: 1   MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS 60
           +H +I K G+ +E  V +AL+ MYAKC  +  AEK         +F+     ++  +EVS
Sbjct: 714 VHAVITKTGYDSETEVCNALISMYAKCGSISDAEK---------QFL----EVSTKNEVS 773

Query: 61  FSSALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSH-------------- 120
           + +A++ +   HG  ++ ++S  +M+   + P+++T + VLSACSH              
Sbjct: 774 W-NAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESM 833

Query: 121 ---------------TVDLLGRAEQLNRAKRFIELMPIKPEA 134
                           VD+L RA  L+RAK FI+ MPIKP+A
Sbjct: 834 NSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDA 861

[Close]

BLAST of Csor.00g310730 vs. ExPASy Swiss-Prot
Match: Q9SVA5 (Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E52 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-13
Identity = 52/160 (32.50%), Postives = 76/160 (47.50%), Query Frame = 0


Query: 2   HFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVSF 61
           H  + K G     ++ +AL+DMYAKC      + +K + S  S+           D V +
Sbjct: 578 HCQLLKRGLECNPYITNALLDMYAKCGS--PEDAHKAFDSAASR-----------DVVCW 637

Query: 62  SSALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSHT-------------- 121
           +S ++ S   HG   + ++ L++M+ E I P+YITF+ VLSACSH               
Sbjct: 638 NS-VISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELML 697

Query: 122 --------------VDLLGRAEQLNRAKRFIELMPIKPEA 134
                         V LLGRA +LN+A+  IE MP KP A
Sbjct: 698 RFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAA 723

[Close]

BLAST of Csor.00g310730 vs. ExPASy Swiss-Prot
Match: O81767 (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana OX=3702 GN=EMB2758 PE=3 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 7.2e-12
Identity = 50/180 (27.78%), Postives = 83/180 (46.11%), Query Frame = 0


Query: 1   MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS 60
           +H  + K+G + +VFV ++L DMY KC  +  A                   L++  ++ 
Sbjct: 473 LHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDA-------------------LSLFYQIP 532

Query: 61  FSSALVFSTML-----HGHANQVVESLKEMLREEITPDYITFISVLSACSHT-------- 120
             +++ ++T++     HGH  + V   KEML E + PD+ITF+++LSACSH+        
Sbjct: 533 RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQW 592

Query: 121 ---------------------VDLLGRAEQLNRAKRFIELMPIKPEAELLDLYYVAYEAH 147
                                VD+ GRA QL  A +FI+ M ++P+A +      A   H
Sbjct: 593 CFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVH 633

[Close]

BLAST of Csor.00g310730 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-11
Identity = 50/180 (27.78%), Postives = 77/180 (42.78%), Query Frame = 0


Query: 1   MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS 60
           +H  I KHG      V SAL+ MY+KC D+   +  +V+ S   +            +V 
Sbjct: 387 IHSYIKKHGIRMNFHVTSALIHMYSKCGDL--EKSREVFNSVEKR------------DVF 446

Query: 61  FSSALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSHT------------- 120
             SA++    +HG  N+ V+   +M    + P+ +TF +V  ACSHT             
Sbjct: 447 VWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQM 506

Query: 121 ----------------VDLLGRAEQLNRAKRFIELMPIKPEAELLDLYYVAYEAHPLLSM 152
                           VD+LGR+  L +A +FIE MPI P   +      A + H  L++
Sbjct: 507 ESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNL 552

[Close]

BLAST of Csor.00g310730 vs. NCBI nr
Match: KAG6588572.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 342 bits (877), Expect = 1.29e-118
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS 60
           MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS
Sbjct: 1   MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS 60

Query: 61  FSSALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSHTVDLLGRAEQLNRA 120
           FSSALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSHTVDLLGRAEQLNRA
Sbjct: 61  FSSALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSHTVDLLGRAEQLNRA 120

Query: 121 KRFIELMPIKPEAELLDLYYVAYEAHPLLSMQVRHYPYLSFTILTLPSI 169
           KRFIELMPIKPEAELLDLYYVAYEAHPLLSMQVRHYPYLSFTILTLPSI
Sbjct: 121 KRFIELMPIKPEAELLDLYYVAYEAHPLLSMQVRHYPYLSFTILTLPSI 169

[Close]

BLAST of Csor.00g310730 vs. NCBI nr
Match: KAG7022366.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243 bits (621), Expect = 1.63e-78
Identity = 127/165 (76.97%), Postives = 133/165 (80.61%), Query Frame = 0


Query: 1   MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS 60
           MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDE+ 
Sbjct: 61  MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDELG 120

Query: 61  FSS------------ALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSHTV 120
             +            A++ +   HGHANQVVESLKEMLREEITPDYITFISVLSACSHT 
Sbjct: 121 VENLVHVNNSLIDMYAIIATCQQHGHANQVVESLKEMLREEITPDYITFISVLSACSHT- 180

Query: 121 DLLGRAEQ--------LNRAKRFIELMPIKPEAELLDLYYVAYEA 145
              GR E+        LNRAKRFIELMPIKPEAELLDLYYVAYEA
Sbjct: 181 ---GRVEEGFFYFNSMLNRAKRFIELMPIKPEAELLDLYYVAYEA 221

[Close]

BLAST of Csor.00g310730 vs. NCBI nr
Match: XP_023530039.1 (putative pentatricopeptide repeat-containing protein At3g15130 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172 bits (435), Expect = 1.11e-50
Identity = 109/217 (50.23%), Postives = 114/217 (52.53%), Query Frame = 0


Query: 1   MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS 60
           MHFLIWKHGFHAEVFVASALVD+                    +KFMIGPFSLTVLDE  
Sbjct: 9   MHFLIWKHGFHAEVFVASALVDI--------------------TKFMIGPFSLTVLDEPG 68

Query: 61  FSSALVFSTML--------------------------------------------HGHAN 120
             + +  +  L                                            HGHAN
Sbjct: 69  VENLVHVNNSLIDMYGKCGLFYDVVKLFSRNAYPLSDHTIWVCEHVVCYKFFGHNHGHAN 128

Query: 121 QVVESLKEMLREEITPDYITFISVLSACSHT----------------------------- 144
           QVVE LKEMLREEITPDYITFISVLSACSHT                             
Sbjct: 129 QVVELLKEMLREEITPDYITFISVLSACSHTGRVEEGFFYFNSMVEVHGSNPGYEHYACI 188

[Close]

BLAST of Csor.00g310730 vs. NCBI nr
Match: KAG6590519.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115 bits (289), Expect = 2.08e-26
Identity = 80/180 (44.44%), Postives = 93/180 (51.67%), Query Frame = 0


Query: 1   MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS 60
           +H  I K GF   + VAS+LV MYAKC            GS    F I  F  TV   V 
Sbjct: 334 IHNQIIKSGFVKNLCVASSLVTMYAKC------------GSLVDAFQI--FEETVDRNVV 393

Query: 61  FSSALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSHT------------- 120
             +A++ +   HGHANQVVE  ++MLRE I PDYITF+SVLSACSHT             
Sbjct: 394 CWTAIIAACQQHGHANQVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSM 453

Query: 121 ----------------VDLLGRAEQLNRAKRFIELMPIKPEAELLDLYYVAYEAHPLLSM 151
                           VDLLGRA QL+RAKRFIELMPIKP+A +      A   H  L M
Sbjct: 454 TKVHGIYPGYEHYACIVDLLGRAGQLDRAKRFIELMPIKPDASVWGALLSACRNHSNLEM 499

[Close]

BLAST of Csor.00g310730 vs. NCBI nr
Match: XP_023538655.1 (putative pentatricopeptide repeat-containing protein At3g23330 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114 bits (286), Expect = 3.06e-26
Identity = 79/180 (43.89%), Postives = 93/180 (51.67%), Query Frame = 0


Query: 1   MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS 60
           +H  I K GF   + VAS+LV MYAKC            GS    F I  F  TV   V 
Sbjct: 165 IHNQIIKSGFVKNLCVASSLVTMYAKC------------GSLVDAFQI--FEETVDRNVV 224

Query: 61  FSSALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSHT------------- 120
             +A++ +   HGHANQVV+  ++MLRE I PDYITF+SVLSACSHT             
Sbjct: 225 CWTAIIAACQQHGHANQVVQLFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSM 284

Query: 121 ----------------VDLLGRAEQLNRAKRFIELMPIKPEAELLDLYYVAYEAHPLLSM 151
                           VDLLGRA QL+RAKRFIELMPIKP+A +      A   H  L M
Sbjct: 285 TKVHGIYPGYEHYACIVDLLGRAGQLDRAKRFIELMPIKPDASVWGALLSACRNHSNLEM 330

[Close]

BLAST of Csor.00g310730 vs. ExPASy TrEMBL
Match: A0A6J1HUM2 (putative pentatricopeptide repeat-containing protein At3g23330 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467973 PE=3 SV=1)

HSP 1 Score: 114 bits (285), Expect = 2.05e-26
Identity = 77/180 (42.78%), Postives = 92/180 (51.11%), Query Frame = 0


Query: 1   MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS 60
           +H  I K GF   + VAS+LV MYAKC  +  A +               F  TV   V 
Sbjct: 165 IHNQIIKSGFVKNLCVASSLVTMYAKCGSLVDAFQT--------------FEETVDRNVV 224

Query: 61  FSSALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSHT------------- 120
             +A++ +   HGHANQVVE  ++MLRE I PDYITF+SVLSACSHT             
Sbjct: 225 CWTAIIAACQQHGHANQVVELFEQMLREGIKPDYITFVSVLSACSHTGRIEEGFFYFNSM 284

Query: 121 ----------------VDLLGRAEQLNRAKRFIELMPIKPEAELLDLYYVAYEAHPLLSM 151
                           VDLLGRA QL+RAKRFIELMPIKP+A +      A   H  L M
Sbjct: 285 IKVHGICPGYEHYACIVDLLGRAGQLDRAKRFIELMPIKPDASVWGALLSACRNHSNLEM 330

[Close]

BLAST of Csor.00g310730 vs. ExPASy TrEMBL
Match: A0A6J1HA81 (putative pentatricopeptide repeat-containing protein At3g23330 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462026 PE=3 SV=1)

HSP 1 Score: 114 bits (284), Expect = 2.82e-26
Identity = 79/180 (43.89%), Postives = 92/180 (51.11%), Query Frame = 0


Query: 1   MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS 60
           +H  I K GF   + VAS+LV MYAKC            GS    F I  F  TV   V 
Sbjct: 165 IHNQIIKSGFVKNLCVASSLVTMYAKC------------GSLVDAFQI--FEETVDRNVV 224

Query: 61  FSSALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSHT------------- 120
             +A++ +   HGHANQVVE  ++MLRE I PDYITF+SVLSACSHT             
Sbjct: 225 CWTAIIAACQQHGHANQVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSM 284

Query: 121 ----------------VDLLGRAEQLNRAKRFIELMPIKPEAELLDLYYVAYEAHPLLSM 151
                           VDLLGRA QL+RAKRFIELMP KP+A +      A   H  L M
Sbjct: 285 TKVHGIYPGYEHYACIVDLLGRAGQLDRAKRFIELMPTKPDASVWGALLSACRNHSNLEM 330

[Close]

BLAST of Csor.00g310730 vs. ExPASy TrEMBL
Match: A0A6J1HVZ6 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467973 PE=3 SV=1)

HSP 1 Score: 114 bits (285), Expect = 3.50e-26
Identity = 77/180 (42.78%), Postives = 92/180 (51.11%), Query Frame = 0


Query: 1   MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS 60
           +H  I K GF   + VAS+LV MYAKC  +  A +               F  TV   V 
Sbjct: 334 IHNQIIKSGFVKNLCVASSLVTMYAKCGSLVDAFQT--------------FEETVDRNVV 393

Query: 61  FSSALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSHT------------- 120
             +A++ +   HGHANQVVE  ++MLRE I PDYITF+SVLSACSHT             
Sbjct: 394 CWTAIIAACQQHGHANQVVELFEQMLREGIKPDYITFVSVLSACSHTGRIEEGFFYFNSM 453

Query: 121 ----------------VDLLGRAEQLNRAKRFIELMPIKPEAELLDLYYVAYEAHPLLSM 151
                           VDLLGRA QL+RAKRFIELMPIKP+A +      A   H  L M
Sbjct: 454 IKVHGICPGYEHYACIVDLLGRAGQLDRAKRFIELMPIKPDASVWGALLSACRNHSNLEM 499

[Close]

BLAST of Csor.00g310730 vs. ExPASy TrEMBL
Match: A0A6J1HAE0 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462026 PE=3 SV=1)

HSP 1 Score: 114 bits (284), Expect = 4.77e-26
Identity = 79/180 (43.89%), Postives = 92/180 (51.11%), Query Frame = 0


Query: 1   MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS 60
           +H  I K GF   + VAS+LV MYAKC            GS    F I  F  TV   V 
Sbjct: 334 IHNQIIKSGFVKNLCVASSLVTMYAKC------------GSLVDAFQI--FEETVDRNVV 393

Query: 61  FSSALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSHT------------- 120
             +A++ +   HGHANQVVE  ++MLRE I PDYITF+SVLSACSHT             
Sbjct: 394 CWTAIIAACQQHGHANQVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSM 453

Query: 121 ----------------VDLLGRAEQLNRAKRFIELMPIKPEAELLDLYYVAYEAHPLLSM 151
                           VDLLGRA QL+RAKRFIELMP KP+A +      A   H  L M
Sbjct: 454 TKVHGIYPGYEHYACIVDLLGRAGQLDRAKRFIELMPTKPDASVWGALLSACRNHSNLEM 499

[Close]

BLAST of Csor.00g310730 vs. ExPASy TrEMBL
Match: A0A6J1DY24 (putative pentatricopeptide repeat-containing protein At3g23330 OS=Momordica charantia OX=3673 GN=LOC111025232 PE=3 SV=1)

HSP 1 Score: 108 bits (270), Expect = 3.21e-24
Identity = 76/180 (42.22%), Postives = 92/180 (51.11%), Query Frame = 0


Query: 1   MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS 60
           +H  I K G+   + VAS+LV MYAKC            GS    F I  F  T    V 
Sbjct: 235 IHNHIIKSGYVKNLCVASSLVTMYAKC------------GSLVDAFQI--FEETDDHNVV 294

Query: 61  FSSALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSHT------------- 120
             +A++ +   HGHAN+VVE  +EML + I PDYITF+SVLSACSHT             
Sbjct: 295 CWTAIIAACQQHGHANRVVELFEEMLGKGIKPDYITFVSVLSACSHTGQVEEGFFYFNSM 354

Query: 121 ----------------VDLLGRAEQLNRAKRFIELMPIKPEAELLDLYYVAYEAHPLLSM 151
                           VDLLGRA QL+RAKRFIELMPIKP+A +      A  +H  L M
Sbjct: 355 VKVHGINPGYEHYACMVDLLGRAGQLDRAKRFIELMPIKPDASVWGALLSACRSHSNLEM 400

[Close]

BLAST of Csor.00g310730 vs. TAIR 10
Match: AT3G23330.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-15
Identity = 53/180 (29.44%), Postives = 85/180 (47.22%), Query Frame = 0


Query: 1   MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS 60
           +H  + + GF + +F+ASALVDMY+KC ++  A   K++             + VLDEVS
Sbjct: 365 LHGYVLRGGFGSNIFIASALVDMYSKCGNIKAA--RKIFD-----------RMNVLDEVS 424

Query: 61  FSSALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSH-------------- 120
           + +A++    LHGH ++ V   +EM R+ + P+ + F++VL+ACSH              
Sbjct: 425 W-TAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSM 484

Query: 121 ---------------TVDLLGRAEQLNRAKRFIELMPIKPEAELLDLYYVAYEAHPLLSM 152
                            DLLGRA +L  A  FI  M ++P   +      +   H  L +
Sbjct: 485 TKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLEL 530

[Close]

BLAST of Csor.00g310730 vs. TAIR 10
Match: AT4G13650.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 78.2 bits (191), Expect = 7.1e-15
Identity = 51/162 (31.48%), Postives = 83/162 (51.23%), Query Frame = 0


Query: 1   MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS 60
           +H +I K G+ +E  V +AL+ MYAKC  +  AEK         +F+     ++  +EVS
Sbjct: 714 VHAVITKTGYDSETEVCNALISMYAKCGSISDAEK---------QFL----EVSTKNEVS 773

Query: 61  FSSALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSH-------------- 120
           + +A++ +   HG  ++ ++S  +M+   + P+++T + VLSACSH              
Sbjct: 774 W-NAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESM 833

Query: 121 ---------------TVDLLGRAEQLNRAKRFIELMPIKPEA 134
                           VD+L RA  L+RAK FI+ MPIKP+A
Sbjct: 834 NSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDA 861

[Close]

BLAST of Csor.00g310730 vs. TAIR 10
Match: AT4G39530.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-14
Identity = 52/160 (32.50%), Postives = 76/160 (47.50%), Query Frame = 0


Query: 2   HFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVSF 61
           H  + K G     ++ +AL+DMYAKC      + +K + S  S+           D V +
Sbjct: 578 HCQLLKRGLECNPYITNALLDMYAKCGS--PEDAHKAFDSAASR-----------DVVCW 637

Query: 62  SSALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSHT-------------- 121
           +S ++ S   HG   + ++ L++M+ E I P+YITF+ VLSACSH               
Sbjct: 638 NS-VISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELML 697

Query: 122 --------------VDLLGRAEQLNRAKRFIELMPIKPEA 134
                         V LLGRA +LN+A+  IE MP KP A
Sbjct: 698 RFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAA 723

[Close]

BLAST of Csor.00g310730 vs. TAIR 10
Match: AT4G33990.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 5.1e-13
Identity = 50/180 (27.78%), Postives = 83/180 (46.11%), Query Frame = 0


Query: 1   MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS 60
           +H  + K+G + +VFV ++L DMY KC  +  A                   L++  ++ 
Sbjct: 473 LHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDA-------------------LSLFYQIP 532

Query: 61  FSSALVFSTML-----HGHANQVVESLKEMLREEITPDYITFISVLSACSHT-------- 120
             +++ ++T++     HGH  + V   KEML E + PD+ITF+++LSACSH+        
Sbjct: 533 RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQW 592

Query: 121 ---------------------VDLLGRAEQLNRAKRFIELMPIKPEAELLDLYYVAYEAH 147
                                VD+ GRA QL  A +FI+ M ++P+A +      A   H
Sbjct: 593 CFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVH 633

[Close]

BLAST of Csor.00g310730 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-12
Identity = 50/180 (27.78%), Postives = 77/180 (42.78%), Query Frame = 0


Query: 1   MHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDEVS 60
           +H  I KHG      V SAL+ MY+KC D+   +  +V+ S   +            +V 
Sbjct: 387 IHSYIKKHGIRMNFHVTSALIHMYSKCGDL--EKSREVFNSVEKR------------DVF 446

Query: 61  FSSALVFSTMLHGHANQVVESLKEMLREEITPDYITFISVLSACSHT------------- 120
             SA++    +HG  N+ V+   +M    + P+ +TF +V  ACSHT             
Sbjct: 447 VWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQM 506

Query: 121 ----------------VDLLGRAEQLNRAKRFIELMPIKPEAELLDLYYVAYEAHPLLSM 152
                           VD+LGR+  L +A +FIE MPI P   +      A + H  L++
Sbjct: 507 ESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNL 552

The following BLAST results are available for this feature:

BLAST of Csor.00g310730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW63	2.6e-14	29.44	Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th...	[more]
Q9SVP7	1.0e-13	31.48	Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX...	[more]
Q9SVA5	2.9e-13	32.50	Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana OX...	[more]
O81767	7.2e-12	27.78	Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana OX...	[more]
O82380	2.1e-11	27.78	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]

BLAST of Csor.00g310730 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588572.1	1.29e-118	100.00	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
KAG7022366.1	1.63e-78	76.97	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
XP_023530039.1	1.11e-50	50.23	putative pentatricopeptide repeat-containing protein At3g15130 [Cucurbita pepo s...	[more]
KAG6590519.1	2.08e-26	44.44	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
XP_023538655.1	3.06e-26	43.89	putative pentatricopeptide repeat-containing protein At3g23330 isoform X2 [Cucur...	[more]

BLAST of Csor.00g310730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HUM2	2.05e-26	42.78	putative pentatricopeptide repeat-containing protein At3g23330 isoform X2 OS=Cuc...	[more]
A0A6J1HA81	2.82e-26	43.89	putative pentatricopeptide repeat-containing protein At3g23330 isoform X2 OS=Cuc...	[more]
A0A6J1HVZ6	3.50e-26	42.78	pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isofor...	[more]
A0A6J1HAE0	4.77e-26	43.89	pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isofor...	[more]
A0A6J1DY24	3.21e-24	42.22	putative pentatricopeptide repeat-containing protein At3g23330 OS=Momordica char...	[more]

BLAST of Csor.00g310730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23330.1	1.9e-15	29.44	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G13650.1	7.1e-15	31.48	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G39530.1	2.1e-14	32.50	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G33990.1	5.1e-13	27.78	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G29760.1	1.5e-12	27.78	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 2..154 e-value: 1.6E-8 score: 36.1
None	No IPR available	PANTHER	PTHR24015:SF1954	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 63..107
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 108..136
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 1..35
None	No IPR available	PANTHER	PTHR24015:SF1954	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 108..136
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 63..107
None	No IPR available	PANTHER	PTHR24015:SF1954	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g310730.m01	Csor.00g310730.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding