Csor.00g310540 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g310540
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Pectin lyase-like superfamily protein
Location	Csor_Chr17: 2287694 .. 2288227 (+)
RNA-Seq Expression	Csor.00g310540
Synteny	Csor.00g310540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTATGTTTGGTTTTGGAAAAGAGCAGCATAGGGAGCCTGGGAGTCCACAATTCCAAGGCATGTGTATCCAACATAACAGTAAGAAACGCAGTGATTAGAGAATCAGACAACGGTGTAAGGATCAAGACATGGCAAGGAGGGTCGGGCTCAGTGAGCGACATCTCGTTCGAGAGCATACAAATGGAGAATGTTAGGAACTGCATCATAGTAGACCAATACTACTGCTTAACAAAGGATTGTCTGAACCAGACATCAGCTGTGTTTGTGAACCAGGTATTGTACAAGAACATCAAAGGAACATACGACATGAGGAACTCTCCAATTCACTTTGCTTGCAGTGACACAGTGGCCTGCACAAACATTACCATGTCTGAAGTAGAGTTGCTGCCACATGAAGGCGAGCTGGTGGAAGATCCTTTTTGTTGGAATGCATTTGGGATTCAGAAGACATTGACCATTCCTCCCATTGATTGCTTGCAAGAGGGTGAGCCTCAGAATGTTGCAGAGACCCCTGAATATAGCTGCTAA

mRNA sequence

ATGGTTGTATGTTTGGTTTTGGAAAAGAGCAGCATAGGGAGCCTGGGAGTCCACAATTCCAAGGCATGTGTATCCAACATAACAGTAAGAAACGCAGTGATTAGAGAATCAGACAACGGTGTAAGGATCAAGACATGGCAAGGAGGGTCGGGCTCAGTGAGCGACATCTCGTTCGAGAGCATACAAATGGAGAATGTTAGGAACTGCATCATAGTAGACCAATACTACTGCTTAACAAAGGATTGTCTGAACCAGACATCAGCTGTGTTTGTGAACCAGGTATTGTACAAGAACATCAAAGGAACATACGACATGAGGAACTCTCCAATTCACTTTGCTTGCAGTGACACAGTGGCCTGCACAAACATTACCATGTCTGAAGTAGAGTTGCTGCCACATGAAGGCGAGCTGGTGGAAGATCCTTTTTGTTGGAATGCATTTGGGATTCAGAAGACATTGACCATTCCTCCCATTGATTGCTTGCAAGAGGGTGAGCCTCAGAATGTTGCAGAGACCCCTGAATATAGCTGCTAA

Coding sequence (CDS)

ATGGTTGTATGTTTGGTTTTGGAAAAGAGCAGCATAGGGAGCCTGGGAGTCCACAATTCCAAGGCATGTGTATCCAACATAACAGTAAGAAACGCAGTGATTAGAGAATCAGACAACGGTGTAAGGATCAAGACATGGCAAGGAGGGTCGGGCTCAGTGAGCGACATCTCGTTCGAGAGCATACAAATGGAGAATGTTAGGAACTGCATCATAGTAGACCAATACTACTGCTTAACAAAGGATTGTCTGAACCAGACATCAGCTGTGTTTGTGAACCAGGTATTGTACAAGAACATCAAAGGAACATACGACATGAGGAACTCTCCAATTCACTTTGCTTGCAGTGACACAGTGGCCTGCACAAACATTACCATGTCTGAAGTAGAGTTGCTGCCACATGAAGGCGAGCTGGTGGAAGATCCTTTTTGTTGGAATGCATTTGGGATTCAGAAGACATTGACCATTCCTCCCATTGATTGCTTGCAAGAGGGTGAGCCTCAGAATGTTGCAGAGACCCCTGAATATAGCTGCTAA

Protein sequence

MVVCLVLEKSSIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESIQMENVRNCIIVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVACTNITMSEVELLPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC

Homology

[Close]

BLAST of Csor.00g310540 vs. ExPASy Swiss-Prot
Match: Q949Z1 (Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 3.2e-71
Identity = 127/165 (76.97%), Postives = 144/165 (87.27%), Query Frame = 0


Query: 2   VVCLVLEKSSIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESI 61
           V C      SIGSLGVHNS+ACVSNITVRN VIR+SDNG+R+KTWQGG+GSVS++ FE+I
Sbjct: 299 VTCGPSHGISIGSLGVHNSQACVSNITVRNTVIRDSDNGLRVKTWQGGTGSVSNLLFENI 358

Query: 62  QMENVRNCIIVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVACT 121
           QMENV NCIIVDQYYC +KDC N+TSAV V  V Y+NIKGTYD+R+ PIHFACSDTVACT
Sbjct: 359 QMENVLNCIIVDQYYCQSKDCRNETSAVKVFDVEYRNIKGTYDVRSPPIHFACSDTVACT 418

Query: 122 NITMSEVELLPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEP 167
           NITMSEVELLP EGELV+DPFCWNA+G Q+TLTIPPIDCL +G P
Sbjct: 419 NITMSEVELLPEEGELVDDPFCWNAYGKQETLTIPPIDCLLDGSP 463

[Close]

BLAST of Csor.00g310540 vs. ExPASy Swiss-Prot
Match: Q94AJ5 (Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana OX=3702 GN=At1g80170 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 9.5e-31
Identity = 71/163 (43.56%), Postives = 99/163 (60.74%), Query Frame = 0


Query: 2   VVCLVLEKSSIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESI 61
           ++C      SIGSLG   S   V +ITV  A+I ++ NGVRIKTWQGGSG VS I F +I
Sbjct: 266 IICGPGHGISIGSLGKSKSWEEVRDITVDTAIISDTANGVRIKTWQGGSGLVSKIIFRNI 325

Query: 62  QMENVRNCIIVDQYYC-LTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVAC 121
           +M NV N II+DQYYC   K C NQTSA+ +  + + +++GT   + + I  +CSD+  C
Sbjct: 326 KMNNVSNPIIIDQYYCDSRKPCANQTSAISIENISFVHVRGTSASKEA-IKISCSDSSPC 385

Query: 122 TNITMSEVELLPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQE 164
            NI + +++L P  G+   + FCW A+G       PP  CL +
Sbjct: 386 RNILLQDIDLEPSNGDGFTESFCWEAYGSSSGQVYPP-PCLSD 426

[Close]

BLAST of Csor.00g310540 vs. ExPASy Swiss-Prot
Match: P35336 (Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.1e-26
Identity = 72/155 (46.45%), Postives = 93/155 (60.00%), Query Frame = 0


Query: 11  SIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESIQMENVRNCI 70
           SIGSLG  NS+A VS++ V  A +  + NGVRIKTWQGGSGS S+I F++++M NV N I
Sbjct: 309 SIGSLGYGNSEAHVSDVVVNGAKLCGTTNGVRIKTWQGGSGSASNIKFQNVEMHNVENPI 368

Query: 71  IVDQYYC-LTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVACTNITMSEVE 130
           I+DQ YC   K C  Q+SAV V  V+Y+NIKGT    N  I F CS    C  I + +V+
Sbjct: 369 IIDQNYCDQDKPCQEQSSAVQVKNVVYQNIKGTC-ASNVAITFDCSKRFPCQGIVLEDVD 428

Query: 131 LLPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEG 165
            L  EG       C N   + +T  + P  C +EG
Sbjct: 429 -LEIEGGAAAKALC-NNVELSETGVVSP-HCQEEG 459

[Close]

BLAST of Csor.00g310540 vs. ExPASy Swiss-Prot
Match: Q8RY29 (Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 2.7e-25
Identity = 66/146 (45.21%), Postives = 87/146 (59.59%), Query Frame = 0


Query: 11  SIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESIQMENVRNCI 70
           SIGSLG  NSKA VS +TV  A +  +DNGVRIKT+QGGSG+ S+I F++IQM+NV+N I
Sbjct: 290 SIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMDNVKNPI 349

Query: 71  IVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVACTNITMSEVEL 130
           I+DQ YC    C  + SAV V  V+Y++I GT    N+ I F CS    C  I +  V +
Sbjct: 350 IIDQDYCDKSKCTTEKSAVQVKNVVYRDISGTSASENA-ITFNCSKNYPCQGIVLDRVNI 409

Query: 131 LPHEGELVEDPFCWNAFGIQKTLTIP 157
              +        C NA  + K   +P
Sbjct: 410 KGGKAT------CTNANVVDKGAVLP 428

[Close]

BLAST of Csor.00g310540 vs. ExPASy Swiss-Prot
Match: O23147 (Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.0e-24
Identity = 63/120 (52.50%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 11  SIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESIQMENVRNCI 70
           SIGSLG  NSKA VS I V  A   ESDNGVRIKT+QGGSG+  +I F++I+MENV+N I
Sbjct: 290 SIGSLGDDNSKAYVSGINVDGAKFSESDNGVRIKTYQGGSGTAKNIKFQNIRMENVKNPI 349

Query: 71  IVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVACTNITMSEVEL 130
           I+DQ YC    C +Q SAV V  V+YKNI GT    +  I   CS+   C  I +  V++
Sbjct: 350 IIDQDYCDKDKCEDQESAVQVKNVVYKNISGT-SATDVAITLNCSEKYPCQGIVLENVKI 408

[Close]

BLAST of Csor.00g310540 vs. NCBI nr
Match: KAG6575148.1 (Polygalacturonase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 367 bits (941), Expect = 4.12e-128
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MVVCLVLEKSSIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFES 60
           MVVCLVLEKSSIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFES
Sbjct: 1   MVVCLVLEKSSIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFES 60

Query: 61  IQMENVRNCIIVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVAC 120
           IQMENVRNCIIVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVAC
Sbjct: 61  IQMENVRNCIIVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVAC 120

Query: 121 TNITMSEVELLPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC 177
           TNITMSEVELLPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC
Sbjct: 121 TNITMSEVELLPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC 177

[Close]

BLAST of Csor.00g310540 vs. NCBI nr
Match: XP_023547909.1 (polygalacturonase At1g48100-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 344 bits (883), Expect = 2.90e-115
Identity = 163/167 (97.60%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 11  SIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESIQMENVRNCI 70
           SIGSLGVHNSKACVSNITVRNA+IRESDNGVRIKTWQGGSGSVSDISFE+IQMENVRNCI
Sbjct: 284 SIGSLGVHNSKACVSNITVRNAMIRESDNGVRIKTWQGGSGSVSDISFENIQMENVRNCI 343

Query: 71  IVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVACTNITMSEVEL 130
           IVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRN+PIHFACSDTVACTNITMSEVEL
Sbjct: 344 IVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNTPIHFACSDTVACTNITMSEVEL 403

Query: 131 LPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC 177
           LPHEGELVEDPFCWNAFG+QKTLTIPPIDCLQEGEPQNVAETPEYSC
Sbjct: 404 LPHEGELVEDPFCWNAFGVQKTLTIPPIDCLQEGEPQNVAETPEYSC 450

[Close]

BLAST of Csor.00g310540 vs. NCBI nr
Match: XP_022958841.1 (polygalacturonase At1g48100-like [Cucurbita moschata])

HSP 1 Score: 346 bits (888), Expect = 4.57e-115
Identity = 167/176 (94.89%), Postives = 169/176 (96.02%), Query Frame = 0


Query: 2   VVCLVLEKSSIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESI 61
           V C      SIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFE+I
Sbjct: 347 VTCGPSHGISIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFENI 406

Query: 62  QMENVRNCIIVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVACT 121
           QMENVRNCIIVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRN+PIHFACSDTVACT
Sbjct: 407 QMENVRNCIIVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNTPIHFACSDTVACT 466

Query: 122 NITMSEVELLPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC 177
           NITMSEVELLPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC
Sbjct: 467 NITMSEVELLPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC 522

[Close]

BLAST of Csor.00g310540 vs. NCBI nr
Match: KAG7013704.1 (Polygalacturonase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 346 bits (887), Expect = 6.48e-115
Identity = 165/167 (98.80%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 11  SIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESIQMENVRNCI 70
           SIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFE+IQMENVRNCI
Sbjct: 356 SIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFENIQMENVRNCI 415

Query: 71  IVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVACTNITMSEVEL 130
           IVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRN+PIHFACSDTVACTNITMSEVEL
Sbjct: 416 IVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNTPIHFACSDTVACTNITMSEVEL 475

Query: 131 LPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC 177
           LPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC
Sbjct: 476 LPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC 522

[Close]

BLAST of Csor.00g310540 vs. NCBI nr
Match: XP_023006565.1 (polygalacturonase At1g48100-like [Cucurbita maxima])

HSP 1 Score: 344 bits (882), Expect = 1.69e-114
Identity = 163/167 (97.60%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 11  SIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESIQMENVRNCI 70
           SIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFE+IQMENVRNCI
Sbjct: 330 SIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFENIQMENVRNCI 389

Query: 71  IVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVACTNITMSEVEL 130
           IVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYD+RN+P+HFACSDTVACTNITMSEVEL
Sbjct: 390 IVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDVRNTPVHFACSDTVACTNITMSEVEL 449

Query: 131 LPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC 177
           LPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC
Sbjct: 450 LPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC 496

[Close]

BLAST of Csor.00g310540 vs. ExPASy TrEMBL
Match: A0A6J1H395 (polygalacturonase At1g48100-like OS=Cucurbita moschata OX=3662 GN=LOC111459994 PE=3 SV=1)

HSP 1 Score: 346 bits (888), Expect = 2.21e-115
Identity = 167/176 (94.89%), Postives = 169/176 (96.02%), Query Frame = 0


Query: 2   VVCLVLEKSSIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESI 61
           V C      SIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFE+I
Sbjct: 347 VTCGPSHGISIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFENI 406

Query: 62  QMENVRNCIIVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVACT 121
           QMENVRNCIIVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRN+PIHFACSDTVACT
Sbjct: 407 QMENVRNCIIVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNTPIHFACSDTVACT 466

Query: 122 NITMSEVELLPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC 177
           NITMSEVELLPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC
Sbjct: 467 NITMSEVELLPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC 522

[Close]

BLAST of Csor.00g310540 vs. ExPASy TrEMBL
Match: A0A6J1L0G9 (polygalacturonase At1g48100-like OS=Cucurbita maxima OX=3661 GN=LOC111499252 PE=3 SV=1)

HSP 1 Score: 344 bits (882), Expect = 8.19e-115
Identity = 163/167 (97.60%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 11  SIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESIQMENVRNCI 70
           SIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFE+IQMENVRNCI
Sbjct: 330 SIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFENIQMENVRNCI 389

Query: 71  IVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVACTNITMSEVEL 130
           IVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYD+RN+P+HFACSDTVACTNITMSEVEL
Sbjct: 390 IVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDVRNTPVHFACSDTVACTNITMSEVEL 449

Query: 131 LPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC 177
           LPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC
Sbjct: 450 LPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC 496

[Close]

BLAST of Csor.00g310540 vs. ExPASy TrEMBL
Match: A0A0A0KB54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G000120 PE=3 SV=1)

HSP 1 Score: 331 bits (848), Expect = 3.58e-110
Identity = 158/176 (89.77%), Postives = 167/176 (94.89%), Query Frame = 0


Query: 2   VVCLVLEKSSIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESI 61
           V C      SIGSLGVHNS+ACVSNITVRNAVIR+SDNG+RIKTWQGGSGSVSDI FE+I
Sbjct: 283 VTCGPSHGISIGSLGVHNSQACVSNITVRNAVIRDSDNGLRIKTWQGGSGSVSDILFENI 342

Query: 62  QMENVRNCIIVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVACT 121
           QMENVRNCIIVDQYYCL+KDCLNQTSAVFVNQVLYKNIKGTYD+RN+PIHFACSD+VACT
Sbjct: 343 QMENVRNCIIVDQYYCLSKDCLNQTSAVFVNQVLYKNIKGTYDVRNTPIHFACSDSVACT 402

Query: 122 NITMSEVELLPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC 177
           NITMSEVELLPHEGELVEDPFCWNAFGIQ+TLTIPPIDCLQEGEPQNVAET EYSC
Sbjct: 403 NITMSEVELLPHEGELVEDPFCWNAFGIQETLTIPPIDCLQEGEPQNVAETSEYSC 458

[Close]

BLAST of Csor.00g310540 vs. ExPASy TrEMBL
Match: A0A5D3BVF7 (Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00640 PE=3 SV=1)

HSP 1 Score: 330 bits (847), Expect = 8.51e-110
Identity = 157/176 (89.20%), Postives = 167/176 (94.89%), Query Frame = 0


Query: 2   VVCLVLEKSSIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESI 61
           V C      SIGSLGVHNS+ACVSNITVRNAVIR+SDNG+RIKTWQGGSGSVSDI FE+I
Sbjct: 300 VTCGPSHGISIGSLGVHNSQACVSNITVRNAVIRDSDNGLRIKTWQGGSGSVSDILFENI 359

Query: 62  QMENVRNCIIVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVACT 121
           QMENVRNCIIVDQYYCL+KDCLNQTSAVFVNQVLYKNIKGTYD+RN+PIHFACSD+VACT
Sbjct: 360 QMENVRNCIIVDQYYCLSKDCLNQTSAVFVNQVLYKNIKGTYDVRNTPIHFACSDSVACT 419

Query: 122 NITMSEVELLPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC 177
           NITMSEVELLPHEGELVEDPFCWNAFG+Q+TLTIPPIDCLQEGEPQNVAET EYSC
Sbjct: 420 NITMSEVELLPHEGELVEDPFCWNAFGVQETLTIPPIDCLQEGEPQNVAETSEYSC 475

[Close]

BLAST of Csor.00g310540 vs. ExPASy TrEMBL
Match: A0A1S3C7J5 (polygalacturonase At1g48100 OS=Cucumis melo OX=3656 GN=LOC103497761 PE=3 SV=1)

HSP 1 Score: 330 bits (847), Expect = 8.51e-110
Identity = 157/176 (89.20%), Postives = 167/176 (94.89%), Query Frame = 0


Query: 2   VVCLVLEKSSIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESI 61
           V C      SIGSLGVHNS+ACVSNITVRNAVIR+SDNG+RIKTWQGGSGSVSDI FE+I
Sbjct: 300 VTCGPSHGISIGSLGVHNSQACVSNITVRNAVIRDSDNGLRIKTWQGGSGSVSDILFENI 359

Query: 62  QMENVRNCIIVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVACT 121
           QMENVRNCIIVDQYYCL+KDCLNQTSAVFVNQVLYKNIKGTYD+RN+PIHFACSD+VACT
Sbjct: 360 QMENVRNCIIVDQYYCLSKDCLNQTSAVFVNQVLYKNIKGTYDVRNTPIHFACSDSVACT 419

Query: 122 NITMSEVELLPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNVAETPEYSC 177
           NITMSEVELLPHEGELVEDPFCWNAFG+Q+TLTIPPIDCLQEGEPQNVAET EYSC
Sbjct: 420 NITMSEVELLPHEGELVEDPFCWNAFGVQETLTIPPIDCLQEGEPQNVAETSEYSC 475

[Close]

BLAST of Csor.00g310540 vs. TAIR 10
Match: AT1G48100.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 269.2 bits (687), Expect = 2.3e-72
Identity = 127/165 (76.97%), Postives = 144/165 (87.27%), Query Frame = 0


Query: 2   VVCLVLEKSSIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESI 61
           V C      SIGSLGVHNS+ACVSNITVRN VIR+SDNG+R+KTWQGG+GSVS++ FE+I
Sbjct: 299 VTCGPSHGISIGSLGVHNSQACVSNITVRNTVIRDSDNGLRVKTWQGGTGSVSNLLFENI 358

Query: 62  QMENVRNCIIVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVACT 121
           QMENV NCIIVDQYYC +KDC N+TSAV V  V Y+NIKGTYD+R+ PIHFACSDTVACT
Sbjct: 359 QMENVLNCIIVDQYYCQSKDCRNETSAVKVFDVEYRNIKGTYDVRSPPIHFACSDTVACT 418

Query: 122 NITMSEVELLPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEP 167
           NITMSEVELLP EGELV+DPFCWNA+G Q+TLTIPPIDCL +G P
Sbjct: 419 NITMSEVELLPEEGELVDDPFCWNAYGKQETLTIPPIDCLLDGSP 463

[Close]

BLAST of Csor.00g310540 vs. TAIR 10
Match: AT1G02460.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 236.5 bits (602), Expect = 1.6e-62
Identity = 104/159 (65.41%), Postives = 135/159 (84.91%), Query Frame = 0


Query: 11  SIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESIQMENVRNCI 70
           SIGSLG HNS+ACVSNITVR++VI+ SDNGVRIKTWQGGSGSVS ++F +I +++VRN I
Sbjct: 322 SIGSLGNHNSRACVSNITVRDSVIKYSDNGVRIKTWQGGSGSVSGVTFNNIHVDSVRNPI 381

Query: 71  IVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVACTNITMSEVEL 130
           I+DQYYC+TKDC N+TSAVFV+ + Y+ IKGTYD+R+ P+HF CSD V CTN+T+S++EL
Sbjct: 382 IIDQYYCMTKDCANKTSAVFVSDIAYQGIKGTYDIRSPPMHFGCSDAVPCTNLTLSDIEL 441

Query: 131 LPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEPQNV 170
           LP +GE+V DPFCWNA+GI + L+IPP+ CL    P+ +
Sbjct: 442 LPAKGEIVLDPFCWNAYGIAEELSIPPVWCLMSDPPKGL 480

[Close]

BLAST of Csor.00g310540 vs. TAIR 10
Match: AT1G56710.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 219.9 bits (559), Expect = 1.6e-57
Identity = 104/165 (63.03%), Postives = 128/165 (77.58%), Query Frame = 0


Query: 2   VVCLVLEKSSIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESI 61
           V C      SIGSLGVHNS+A VSNITV N+ I  SDNGVRIKTWQGGSGSVS I F +I
Sbjct: 269 VTCGPSHGISIGSLGVHNSQAYVSNITVTNSTIWNSDNGVRIKTWQGGSGSVSRIVFSNI 328

Query: 62  QMENVRNCIIVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVACT 121
            M NVRN I++DQYYC T +C NQTSAV ++ VLY NIKGTYD+R+ PIHF CSD+V CT
Sbjct: 329 LMVNVRNPIMIDQYYCQTNNCANQTSAVIISDVLYANIKGTYDLRSPPIHFGCSDSVPCT 388

Query: 122 NITMSEVELLPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQEGEP 167
           N+T++EV+L P +G+ +E+PFCWNA+G  K +T+PP+ CL +  P
Sbjct: 389 NLTLTEVDLFPSKGQHLENPFCWNAYGSMK-ITVPPVYCLLDAPP 432

[Close]

BLAST of Csor.00g310540 vs. TAIR 10
Match: AT4G01890.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 212.2 bits (539), Expect = 3.3e-55
Identity = 93/152 (61.18%), Postives = 124/152 (81.58%), Query Frame = 0


Query: 11  SIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESIQMENVRNCI 70
           SIGSLG  NS ACVSN+TVR++ I+ S+NGVRIKTWQGGSGSVS ++F++I ++ VRN I
Sbjct: 299 SIGSLGEKNSHACVSNVTVRDSFIKFSENGVRIKTWQGGSGSVSGVTFDNIHVDTVRNPI 358

Query: 71  IVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVACTNITMSEVEL 130
           I+DQYYC TK C N+TSAVFVN ++Y++IKGTYD+R+ P+HF CS+ V CTN+T+S +EL
Sbjct: 359 IIDQYYCTTKSCANKTSAVFVNDIVYQSIKGTYDIRSPPMHFGCSNNVPCTNLTLSNIEL 418

Query: 131 LPHEGELVEDPFCWNAFGIQKTLTIPPIDCLQ 163
           LP + ++V  PFCWNA+GI    ++P I CL+
Sbjct: 419 LPSKEDIVVGPFCWNAYGITDEFSVPLISCLK 450

[Close]

BLAST of Csor.00g310540 vs. TAIR 10
Match: AT5G14650.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 179.9 bits (455), Expect = 1.8e-45
Identity = 90/169 (53.25%), Postives = 115/169 (68.05%), Query Frame = 0


Query: 11  SIGSLGVHNSKACVSNITVRNAVIRESDNGVRIKTWQGGSGSVSDISFESIQMENVRNCI 70
           SIG LG  N+KACVSNITVR+  + E+ NGVRIK+WQGGSGSV  + F +IQ+ NV N I
Sbjct: 269 SIGGLGKDNTKACVSNITVRDVTMHETTNGVRIKSWQGGSGSVKQVMFSNIQVSNVANPI 328

Query: 71  IVDQYYCLTKDCLNQTSAVFVNQVLYKNIKGTYDMRNSPIHFACSDTVACTNITMSEVEL 130
           I+DQYYC    C N+TSAV V+ + Y NIKGTY     P+ FACSD++ CT I++S +EL
Sbjct: 329 IIDQYYCDGGGCHNETSAVAVSNINYINIKGTY--TKEPVRFACSDSLPCTGISLSTIEL 388

Query: 131 LPHEGELVE-DPFCWNAFGIQKTLTIPPIDCLQ-EGEPQNVAETPEYSC 178
            P  G+    DPFCW A G  KT T+PPI CL+ E  P+  + +   +C
Sbjct: 389 KPATGKASSLDPFCWKAHGELKTKTLPPIQCLKTEKSPEAASRSNNDAC 435

The following BLAST results are available for this feature:

BLAST of Csor.00g310540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q949Z1	3.2e-71	76.97	Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV...	[more]
Q94AJ5	9.5e-31	43.56	Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana OX=3702 GN=At1g8017...	[more]
P35336	4.1e-26	46.45	Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1	[more]
Q8RY29	2.7e-25	45.21	Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2	[more]
O23147	1.0e-24	52.50	Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1	[more]

BLAST of Csor.00g310540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575148.1	4.12e-128	100.00	Polygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023547909.1	2.90e-115	97.60	polygalacturonase At1g48100-like isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_022958841.1	4.57e-115	94.89	polygalacturonase At1g48100-like [Cucurbita moschata]	[more]
KAG7013704.1	6.48e-115	98.80	Polygalacturonase, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023006565.1	1.69e-114	97.60	polygalacturonase At1g48100-like [Cucurbita maxima]	[more]

BLAST of Csor.00g310540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H395	2.21e-115	94.89	polygalacturonase At1g48100-like OS=Cucurbita moschata OX=3662 GN=LOC111459994 P...	[more]
A0A6J1L0G9	8.19e-115	97.60	polygalacturonase At1g48100-like OS=Cucurbita maxima OX=3661 GN=LOC111499252 PE=...	[more]
A0A0A0KB54	3.58e-110	89.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G000120 PE=3 SV=1	[more]
A0A5D3BVF7	8.51e-110	89.20	Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G006...	[more]
A0A1S3C7J5	8.51e-110	89.20	polygalacturonase At1g48100 OS=Cucumis melo OX=3656 GN=LOC103497761 PE=3 SV=1	[more]

BLAST of Csor.00g310540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48100.1	2.3e-72	76.97	Pectin lyase-like superfamily protein	[more]
AT1G02460.1	1.6e-62	65.41	Pectin lyase-like superfamily protein	[more]
AT1G56710.1	1.6e-57	63.03	Pectin lyase-like superfamily protein	[more]
AT4G01890.1	3.3e-55	61.18	Pectin lyase-like superfamily protein	[more]
AT5G14650.1	1.8e-45	53.25	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 2..173 e-value: 3.0E-41 score: 143.7
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 11..130 e-value: 1.2E-34 score: 119.9
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 2..168
None	No IPR available	PANTHER	PTHR31375:SF142	POLYGALACTURONASE PLANT-LIKE PROTEIN	coord: 2..168
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 11..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g310540.m01	Csor.00g310540.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity