Csor.00g305900 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g305900
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	60S ribosomal protein L9-like
Location	Csor_Chr18: 13127514 .. 13129360 (+)
RNA-Seq Expression	Csor.00g305900
Synteny	Csor.00g305900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACCATTCTTTCATCCGAGTCTATGGATATCCCAGATGGGGTTAAAATCAAGGTCCATGCCAAGATCATCGAGGTTGAAGGTCCTCGTGGTAAGCTTGTTCGTAACTTTAAGCATCTCAATCTCGACTTTCAACTCATTACTGACGAGGCCACTGGCAAGAAGAAGCTCCGGATTGAAGCATGGTTTGGGTCTAGGAAGACATCCGCCGCTATTCGTACTGCTCTCAGCCATGTTGAGAACCTCATTACCGGCGTCACTAAGGGCTATCGTTACAAGATGCGCTTCGTCTACGCTCACTTTCCCATCAATGCTAGCATCACAAACGGCAGCAAGTCTATTGAGATTCGTAATTTTCTTGGAGAAAAGAAGGTATTGTTTTCTCTATACTTCTCATGTTTTTCATTCATTAGTAATCGCCGTGTGTTTGATTTGACCATCACTTGTGTTAGGTTTTGATCTTATTATTTAGTTAGTGTTCTTCTTGGAAATATATATTCCAAGTAACTTCTGTTCATTAGTAATGAGCCTTCCATTAGTTATGCTGGTTTTTTCAATTTTGTGCCATATTCCATTCTTTGATATCTACTGTTTACATTGATGTTTGTACACTCGTATGGACCTGTGCTGTTACTTGTTTACAACCTCGCGCTTTGATTTTATGCTATAAATTTTATTCATAGGAATCTGCTTGGTGGTGATTTTACATGAAAAATAAACCTTCTAATATTACTTAGCTCTAACCAGTTTCTGTGAGGTTTGTGGAATTCTGTCTATATCAATTTTTGCTGTTGCATTATTTATATTGTTTTCCATGCGTGTTCGGCATTTGAATTACCATTTTTACGAATGGGTTCTCCATCATTACATTATTTCTTCTTCATGTACATATGGGTTGGGACCTATTGATAACCATGGTTAGTCTTTTTGTCATCTACTTCTTTACCTATGTTTTCATAAAACCATGCCAAGATTTTGAAAATAAAATCATTAGTTTTTGAAAGCCAAATGATATTTAAACGGGTCTTCGAAGCTACAAGTCTGTTTTGTGCAATGGCTATTCGAACCTCATTTCCAGTTCTTTTAGTAATTCATATTTCAGTTTAGTACCAAAACCAACATATAAAGAAGCCTAGGCCAGTGCCAAATCTAAAATTTCAGAATATGAAATATTCGTCCTGATTGGAAATTGATTTGAACTTAATATCTTATTTGGTGCCATCTTTCTAAGGTGTATAAATTGGCCCTGATACTCGTAAATGAATAAAGGCACAAGTCATTCACATTCTGCGCTTCGTGTCAGAGTTTTGCATGTTTAAGATAGATAGGATGGTTTGCTTCTAATCTCTTATCTTCACTCACTCTCAAAATATTATTGACAAGCATGTTTCTTACAAAGAAAAGAGAAACATTTGGAATTGGAATTGTAATTGTAAATACTTTTGTAGCATGGATTTGTTAGATGTCATTATCGGCTAAACTTTAATGCGGGTAATTGTTGAATCAGGTGAGGAAGGTGGATATGCTTGATGGAGTTTCAATTACCCGATCTGAGAAAGTGAAAGATGAGTTGGTCTTGGATGGAAATGATATTGAACTGGTTTCACGGTCTTGTGCCCTTATAAACCAGGTTTGTATTGATCAGACTCACATGATGCAGGCATTGCTGCACATAAAAGAAAAGAGTTAAATGGTGCATTTCTTGGTCTTAAATCATTCTGTGGCTTACTCTTTCTTGGCTTCTTTTGCAGAAATGTCATGTGAAGAACAAGGATATACGGAAGTTCCTTGATGGTATCTATGTCAGCGAGAAGGGTACCATTGTTGGAGAAGAAGAGGGATGA

mRNA sequence

ATGAAGACCATTCTTTCATCCGAGTCTATGGATATCCCAGATGGGGTTAAAATCAAGGTCCATGCCAAGATCATCGAGGTTGAAGGTCCTCGTGGTAAGCTTGTTCGTAACTTTAAGCATCTCAATCTCGACTTTCAACTCATTACTGACGAGGCCACTGGCAAGAAGAAGCTCCGGATTGAAGCATGGTTTGGGTCTAGGAAGACATCCGCCGCTATTCGTACTGCTCTCAGCCATGTTGAGAACCTCATTACCGGCGTCACTAAGGGCTATCGTTACAAGATGCGCTTCGTCTACGCTCACTTTCCCATCAATGCTAGCATCACAAACGGCAGCAAGTCTATTGAGATTCGTAATTTTCTTGGAGAAAAGAAGGTGAGGAAGGTGGATATGCTTGATGGAGTTTCAATTACCCGATCTGAGAAAGTGAAAGATGAGTTGGTCTTGGATGGAAATGATATTGAACTGGTTTCACGGTCTTGTGCCCTTATAAACCAGAAATGTCATGTGAAGAACAAGGATATACGGAAGTTCCTTGATGGTATCTATGTCAGCGAGAAGGGTACCATTGTTGGAGAAGAAGAGGGATGA

Coding sequence (CDS)

ATGAAGACCATTCTTTCATCCGAGTCTATGGATATCCCAGATGGGGTTAAAATCAAGGTCCATGCCAAGATCATCGAGGTTGAAGGTCCTCGTGGTAAGCTTGTTCGTAACTTTAAGCATCTCAATCTCGACTTTCAACTCATTACTGACGAGGCCACTGGCAAGAAGAAGCTCCGGATTGAAGCATGGTTTGGGTCTAGGAAGACATCCGCCGCTATTCGTACTGCTCTCAGCCATGTTGAGAACCTCATTACCGGCGTCACTAAGGGCTATCGTTACAAGATGCGCTTCGTCTACGCTCACTTTCCCATCAATGCTAGCATCACAAACGGCAGCAAGTCTATTGAGATTCGTAATTTTCTTGGAGAAAAGAAGGTGAGGAAGGTGGATATGCTTGATGGAGTTTCAATTACCCGATCTGAGAAAGTGAAAGATGAGTTGGTCTTGGATGGAAATGATATTGAACTGGTTTCACGGTCTTGTGCCCTTATAAACCAGAAATGTCATGTGAAGAACAAGGATATACGGAAGTTCCTTGATGGTATCTATGTCAGCGAGAAGGGTACCATTGTTGGAGAAGAAGAGGGATGA

Protein sequence

MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRIEAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNFLGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTIVGEEEG

Homology

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BLAST of Csor.00g305900 vs. ExPASy Swiss-Prot
Match: P30707 (60S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 3.7e-92
Identity = 172/194 (88.66%), Postives = 184/194 (94.85%), Query Frame = 0


Query: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSE+M+IPDGV IKV+AK+IEVEGPRGKLVR+FKHLNLDF LITDE  GKKKL+I
Sbjct: 1   MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDE-NGKKKLKI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           +AWFGSRKTSAAIRTALSHVENLITGVTKG+RYKMRFVYA FPINASITN +KSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVD+LDGVSI RSEKVKDE+VLDGNDIELVSRSCALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEKG +V EE
Sbjct: 181 GIYVSEKGAVVVEE 193

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BLAST of Csor.00g305900 vs. ExPASy Swiss-Prot
Match: P49209 (60S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3)

HSP 1 Score: 332.8 bits (852), Expect = 2.6e-90
Identity = 165/194 (85.05%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSE+MDIPD V IKVHAK+IEVEGPRGKLVR+FKHLNLDFQLI D  TGKKKL+I
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           ++WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    KSIEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+I RSEKVKDE+VLDGNDIELVSRSCALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEK  IV EE
Sbjct: 181 GIYVSEKSKIVEEE 194

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BLAST of Csor.00g305900 vs. ExPASy Swiss-Prot
Match: Q9SZX9 (60S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 4.2e-88
Identity = 159/194 (81.96%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSE+MDIPDGV IKV+AK+IEVEGPRGKL R+FKHLNLDFQLI D+ TGK++L+I
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           ++WFGSRKTSA+IRTALSHV+NLI GVT+G+ Y+MRFVYAHFPINASI   +KSIEIRNF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV I RSEKVKDE++L+GNDIELVSRSCALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEKG I  EE
Sbjct: 181 GIYVSEKGKIAVEE 194

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BLAST of Csor.00g305900 vs. ExPASy Swiss-Prot
Match: P49210 (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 SV=3)

HSP 1 Score: 311.2 bits (796), Expect = 8.2e-84
Identity = 153/190 (80.53%), Postives = 175/190 (92.11%), Query Frame = 0


Query: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTIL+SE+M+IP+GV ++V AK++ VEGPRGKL RNFKHLNLDFQL+     G +KL++
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLL----EGGRKLQV 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           +AWFG+R+T AAIRTA+SHV+NLITGVTKGYRYKMRFVYAHFPINASITN + +IEIRNF
Sbjct: 61  DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDML+GV+I RSEKVKDELVLDGNDIELVSRS ALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTI 191
           GIYVS+KGTI
Sbjct: 181 GIYVSDKGTI 186

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BLAST of Csor.00g305900 vs. ExPASy Swiss-Prot
Match: Q90YW0 (60S ribosomal protein L9 OS=Ictalurus punctatus OX=7998 GN=rpl9 PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.9e-57
Identity = 113/194 (58.25%), Postives = 142/194 (73.20%), Query Frame = 0


Query: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILS++++DIPD V + +  + + V+GPRG L R F H+NL+ +L+  +   +KKLR+
Sbjct: 1   MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKK---QKKLRV 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           + W+G+RK  A +RT  SHV+N+I GVT G+RYKMR VYAHFPIN  I      +EIRNF
Sbjct: 61  DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEK +R+V M  GV+   S   KDELVL+GNDIELVS S ALI Q   VKNKDIRKFLD
Sbjct: 121 LGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEKGT+V  E
Sbjct: 181 GIYVSEKGTVVEPE 191

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BLAST of Csor.00g305900 vs. NCBI nr
Match: XP_022945825.1 (60S ribosomal protein L9-like [Cucurbita moschata] >XP_023542544.1 60S ribosomal protein L9-like [Cucurbita pepo subsp. pepo] >KAG6574272.1 60S ribosomal protein L9, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013341.1 60S ribosomal protein L9, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 387 bits (994), Expect = 1.46e-135
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEEEG 196
           GIYVSEKGTIVGEEEG
Sbjct: 181 GIYVSEKGTIVGEEEG 196

[Close]

BLAST of Csor.00g305900 vs. NCBI nr
Match: XP_022968434.1 (60S ribosomal protein L9-like [Cucurbita maxima])

HSP 1 Score: 385 bits (988), Expect = 1.20e-134
Identity = 195/196 (99.49%), Postives = 195/196 (99.49%), Query Frame = 0


Query: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN SKSIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEEEG 196
           GIYVSEKGTIVGEEEG
Sbjct: 181 GIYVSEKGTIVGEEEG 196

[Close]

BLAST of Csor.00g305900 vs. NCBI nr
Match: XP_008462900.1 (PREDICTED: 60S ribosomal protein L9-like [Cucumis melo] >XP_016902942.1 PREDICTED: 60S ribosomal protein L9-like [Cucumis melo] >KAA0056651.1 60S ribosomal protein L9-like [Cucumis melo var. makuwa] >TYK04612.1 60S ribosomal protein L9-like [Cucumis melo var. makuwa])

HSP 1 Score: 381 bits (979), Expect = 2.72e-133
Identity = 193/195 (98.97%), Postives = 194/195 (99.49%), Query Frame = 0


Query: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEEE 195
           GIYVSEKGTIVG +E
Sbjct: 181 GIYVSEKGTIVGADE 195

[Close]

BLAST of Csor.00g305900 vs. NCBI nr
Match: XP_004137145.1 (60S ribosomal protein L9 [Cucumis sativus] >KGN53768.1 hypothetical protein Csa_014503 [Cucumis sativus])

HSP 1 Score: 381 bits (978), Expect = 3.87e-133
Identity = 191/195 (97.95%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITD+ATGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDDATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSK+IEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKAIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEEE 195
           GIYVSEKGTI+GE+E
Sbjct: 181 GIYVSEKGTIIGEDE 195

[Close]

BLAST of Csor.00g305900 vs. NCBI nr
Match: XP_022922852.1 (60S ribosomal protein L9-like [Cucurbita moschata] >XP_022984942.1 60S ribosomal protein L9 [Cucurbita maxima] >XP_023553154.1 60S ribosomal protein L9 [Cucurbita pepo subsp. pepo] >KAG6576613.1 60S ribosomal protein L9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 381 bits (978), Expect = 4.01e-133
Identity = 193/196 (98.47%), Postives = 195/196 (99.49%), Query Frame = 0


Query: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSE+MDIPDGVKIKV+AKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN SKSIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEEEG 196
           GIYVSEKGTIVGEEEG
Sbjct: 181 GIYVSEKGTIVGEEEG 196

[Close]

BLAST of Csor.00g305900 vs. ExPASy TrEMBL
Match: A0A6J1G231 (60S ribosomal protein L9-like OS=Cucurbita moschata OX=3662 GN=LOC111449954 PE=3 SV=1)

HSP 1 Score: 387 bits (994), Expect = 7.05e-136
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEEEG 196
           GIYVSEKGTIVGEEEG
Sbjct: 181 GIYVSEKGTIVGEEEG 196

[Close]

BLAST of Csor.00g305900 vs. ExPASy TrEMBL
Match: A0A6J1HZM6 (60S ribosomal protein L9-like OS=Cucurbita maxima OX=3661 GN=LOC111467681 PE=3 SV=1)

HSP 1 Score: 385 bits (988), Expect = 5.80e-135
Identity = 195/196 (99.49%), Postives = 195/196 (99.49%), Query Frame = 0


Query: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN SKSIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEEEG 196
           GIYVSEKGTIVGEEEG
Sbjct: 181 GIYVSEKGTIVGEEEG 196

[Close]

BLAST of Csor.00g305900 vs. ExPASy TrEMBL
Match: A0A1S3CHZ9 (60S ribosomal protein L9-like OS=Cucumis melo OX=3656 GN=LOC103501171 PE=3 SV=1)

HSP 1 Score: 381 bits (979), Expect = 1.32e-133
Identity = 193/195 (98.97%), Postives = 194/195 (99.49%), Query Frame = 0


Query: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEEE 195
           GIYVSEKGTIVG +E
Sbjct: 181 GIYVSEKGTIVGADE 195

[Close]

BLAST of Csor.00g305900 vs. ExPASy TrEMBL
Match: A0A5D3C0B3 (60S ribosomal protein L9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00160 PE=3 SV=1)

HSP 1 Score: 381 bits (979), Expect = 1.32e-133
Identity = 193/195 (98.97%), Postives = 194/195 (99.49%), Query Frame = 0


Query: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEEE 195
           GIYVSEKGTIVG +E
Sbjct: 181 GIYVSEKGTIVGADE 195

[Close]

BLAST of Csor.00g305900 vs. ExPASy TrEMBL
Match: A0A0A0KW25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G124900 PE=3 SV=1)

HSP 1 Score: 381 bits (978), Expect = 1.87e-133
Identity = 191/195 (97.95%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITD+ATGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDDATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSK+IEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKAIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEEE 195
           GIYVSEKGTI+GE+E
Sbjct: 181 GIYVSEKGTIIGEDE 195

[Close]

BLAST of Csor.00g305900 vs. TAIR 10
Match: AT1G33120.1 (Ribosomal protein L6 family )

HSP 1 Score: 332.8 bits (852), Expect = 1.9e-91
Identity = 165/194 (85.05%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSE+MDIPD V IKVHAK+IEVEGPRGKLVR+FKHLNLDFQLI D  TGKKKL+I
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           ++WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    KSIEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+I RSEKVKDE+VLDGNDIELVSRSCALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEK  IV EE
Sbjct: 181 GIYVSEKSKIVEEE 194

[Close]

BLAST of Csor.00g305900 vs. TAIR 10
Match: AT1G33140.1 (Ribosomal protein L6 family )

HSP 1 Score: 332.8 bits (852), Expect = 1.9e-91
Identity = 165/194 (85.05%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSE+MDIPD V IKVHAK+IEVEGPRGKLVR+FKHLNLDFQLI D  TGKKKL+I
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           ++WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    KSIEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+I RSEKVKDE+VLDGNDIELVSRSCALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEK  IV EE
Sbjct: 181 GIYVSEKSKIVEEE 194

[Close]

BLAST of Csor.00g305900 vs. TAIR 10
Match: AT4G10450.1 (Ribosomal protein L6 family )

HSP 1 Score: 325.5 bits (833), Expect = 3.0e-89
Identity = 159/194 (81.96%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSE+MDIPDGV IKV+AK+IEVEGPRGKL R+FKHLNLDFQLI D+ TGK++L+I
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           ++WFGSRKTSA+IRTALSHV+NLI GVT+G+ Y+MRFVYAHFPINASI   +KSIEIRNF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV I RSEKVKDE++L+GNDIELVSRSCALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEKG I  EE
Sbjct: 181 GIYVSEKGKIAVEE 194

The following BLAST results are available for this feature:

BLAST of Csor.00g305900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30707	3.7e-92	88.66	60S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1	[more]
P49209	2.6e-90	85.05	60S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3	[more]
Q9SZX9	4.2e-88	81.96	60S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1	[more]
P49210	8.2e-84	80.53	60S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 S...	[more]
Q90YW0	2.9e-57	58.25	60S ribosomal protein L9 OS=Ictalurus punctatus OX=7998 GN=rpl9 PE=2 SV=1	[more]

BLAST of Csor.00g305900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945825.1	1.46e-135	100.00	60S ribosomal protein L9-like [Cucurbita moschata] >XP_023542544.1 60S ribosomal...	[more]
XP_022968434.1	1.20e-134	99.49	60S ribosomal protein L9-like [Cucurbita maxima]	[more]
XP_008462900.1	2.72e-133	98.97	PREDICTED: 60S ribosomal protein L9-like [Cucumis melo] >XP_016902942.1 PREDICTE...	[more]
XP_004137145.1	3.87e-133	97.95	60S ribosomal protein L9 [Cucumis sativus] >KGN53768.1 hypothetical protein Csa_...	[more]
XP_022922852.1	4.01e-133	98.47	60S ribosomal protein L9-like [Cucurbita moschata] >XP_022984942.1 60S ribosomal...	[more]

BLAST of Csor.00g305900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G231	7.05e-136	100.00	60S ribosomal protein L9-like OS=Cucurbita moschata OX=3662 GN=LOC111449954 PE=3...	[more]
A0A6J1HZM6	5.80e-135	99.49	60S ribosomal protein L9-like OS=Cucurbita maxima OX=3661 GN=LOC111467681 PE=3 S...	[more]
A0A1S3CHZ9	1.32e-133	98.97	60S ribosomal protein L9-like OS=Cucumis melo OX=3656 GN=LOC103501171 PE=3 SV=1	[more]
A0A5D3C0B3	1.32e-133	98.97	60S ribosomal protein L9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A0A0KW25	1.87e-133	97.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G124900 PE=3 SV=1	[more]

BLAST of Csor.00g305900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33120.1	1.9e-91	85.05	Ribosomal protein L6 family	[more]
AT1G33140.1	1.9e-91	85.05	Ribosomal protein L6 family	[more]
AT4G10450.1	3.0e-89	81.96	Ribosomal protein L6 family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 1..90 e-value: 4.8E-29 score: 102.7
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 91..195 e-value: 1.1E-51 score: 175.3
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 1..90
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 91..187
IPR020040	Ribosomal protein L6, alpha-beta domain	PFAM	PF00347	Ribosomal_L6	coord: 107..181 e-value: 3.6E-12 score: 46.8 coord: 12..90 e-value: 6.8E-11 score: 42.7
IPR000702	Ribosomal protein L6	PIRSF	PIRSF002162	RPL6p_RPL6a_RPL9e_RPL9o	coord: 1..190 e-value: 7.0E-30 score: 101.8
IPR000702	Ribosomal protein L6	PANTHER	PTHR11655	60S/50S RIBOSOMAL PROTEIN L6/L9	coord: 1..194
None	No IPR available	PANTHER	PTHR11655:SF40	60S RIBOSOMAL PROTEIN L9-LIKE	coord: 1..194
IPR002359	Ribosomal protein L6, conserved site-2	PROSITE	PS00700	RIBOSOMAL_L6_2	coord: 166..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g305900.m01	Csor.00g305900.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome