Csor.00g305660 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g305660
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	EKC/KEOPS complex, subunit Pcc1
Location	Csor_Chr18: 13023025 .. 13024054 (+)
RNA-Seq Expression	Csor.00g305660
Synteny	Csor.00g305660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCGACAGCTTCCGTCGTTTCTGATGGAGATGCTAAATGGGAATTCAGCTGGTTCCTCTCTCTCTCTCTCTAAGCCCATAAATGCATAGATACAAGTTTTCCTTTGATAGTATGGCATGCTTTTAGATCAGTTTGTTTATTATCGTTGCTACGTTAGCATTTTGGTGAGCTTCGCGTCGTTAGTTTAATCTTATTTCTCATTTGATTAATCCGTTCTGTTTTTTTTTTTTTCTCTGGTTCCTTGCAATTTCCATATTCAAAATAAGACAATGATAATGATGATGATGATCATGTTCTTGTGCCTGGCAAGTGGCAACCCATTTTTCTTTTGTTGCTGAACCCGAAGTTTTGCGAGTAAAATAGTGTCATGAAAGCTCAAATATGCAAAGCTTTCTTCTTTTGCTATGGTTCCTAGAACCCAATGTTGTTTCCTTTCTGGGTGTTGTTAGTGTTTAACAATTGCTATTTGTTCCTAAGTGGTCATTGCGCTTGCTTCTTTCTTTAAGGGTCAACATTTATGTTGGAAACATGCAGTTTAACTCATCGTTTGCTATCTGCAGTGACTTCGAAGTGGACTGTGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAGTCGTCGATAAAGAGGTGCTTCTCGATTATTTCAACCTTCGCATTGTGCTCCCTAGTGGACTTGTTTCTGATTTGATTTCTGTGCTAAGTACAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCAGTGTGAGCCTATTATGCTCTTGGCATTCCTCATTAATAATACATGGATACCAAAATAGCTTAATACAGAATTCTTGGGAACATTCACAATTCTCTTCAATCATTTTTTAGAATTTTCATTAGCTGTCTGACTTGTTTCATGCAGACACTTCGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATATAGTGCTTTTCTGGATGTGCTTACTCTTGCCATAAAAACAATCGAAGATTTCGGACAAGGATTGGATTTCTGA

mRNA sequence

ATGGCTCCGACAGCTTCCGTCGTTTCTGATGGAGATGCTAAATGGGAATTCAGCTGTGACTTCGAAGTGGACTGTGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAGTCGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCAGTACACTTCGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATATAGTGCTTTTCTGGATGTGCTTACTCTTGCCATAAAAACAATCGAAGATTTCGGACAAGGATTGGATTTCTGA

Coding sequence (CDS)

ATGGCTCCGACAGCTTCCGTCGTTTCTGATGGAGATGCTAAATGGGAATTCAGCTGTGACTTCGAAGTGGACTGTGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAGTCGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCAGTACACTTCGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATATAGTGCTTTTCTGGATGTGCTTACTCTTGCCATAAAAACAATCGAAGATTTCGGACAAGGATTGGATTTCTGA

Protein sequence

MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF

Homology

[Close]

BLAST of Csor.00g305660 vs. NCBI nr
Match: XP_022945934.1 (uncharacterized protein LOC111450028 [Cucurbita moschata] >XP_023541072.1 uncharacterized protein LOC111801345 isoform X1 [Cucurbita pepo subsp. pepo] >KAG6574248.1 hypothetical protein SDJN03_28135, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013317.1 hypothetical protein SDJN02_26076 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196 bits (499), Expect = 3.16e-63
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
          MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL
Sbjct: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60

Query: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 99
          SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
Sbjct: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 99

[Close]

BLAST of Csor.00g305660 vs. NCBI nr
Match: XP_022968168.1 (uncharacterized protein LOC111467483 isoform X2 [Cucurbita maxima])

HSP 1 Score: 190 bits (483), Expect = 8.72e-61
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
          MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKR MTVSDGKL
Sbjct: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKRGMTVSDGKL 60

Query: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 99
          SVHFEAVEARFLRAS SAFLDVLTLAIKTIEDFGQGLDF
Sbjct: 61 SVHFEAVEARFLRASCSAFLDVLTLAIKTIEDFGQGLDF 99

[Close]

BLAST of Csor.00g305660 vs. NCBI nr
Match: XP_022141079.1 (uncharacterized protein LOC111011564 [Momordica charantia])

HSP 1 Score: 177 bits (449), Expect = 2.77e-55
Identity = 89/98 (90.82%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
           MAPTASV SDG+AKWEF CDFEVD ESEKKASIVYNAL VDKELQPDKVKREM VSDGKL
Sbjct: 24  MAPTASVASDGEAKWEFRCDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKL 83

Query: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLD 98
           SVHFEAVEARFLRAS+SAF+DVLTLA KTIEDFGQGLD
Sbjct: 84  SVHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGLD 121

[Close]

BLAST of Csor.00g305660 vs. NCBI nr
Match: XP_038895564.1 (uncharacterized protein LOC120083771 [Benincasa hispida])

HSP 1 Score: 175 bits (443), Expect = 1.10e-54
Identity = 86/99 (86.87%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
          MAPTASV SDG+AKWEFSCDFEVD ESEKKASIVYNAL+VDKELQPDKVKR M+VSDGKL
Sbjct: 1  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRVMSVSDGKL 60

Query: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 99
          S+HFEAVEARFLRAS+SAF+DVLTLA KT+EDFGQ +DF
Sbjct: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTVEDFGQEVDF 99

[Close]

BLAST of Csor.00g305660 vs. NCBI nr
Match: XP_023553191.1 (uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 173 bits (438), Expect = 6.39e-54
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
          M PT SV SDG+  WEFSCDFEVD ESEKKASIVY ALVVDKELQPDKVKREMTVSDGKL
Sbjct: 1  MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60

Query: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 99
          S+HFEAVEARFLRAS+SAF+DVLTLA KTIEDFGQG+DF
Sbjct: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 99

[Close]

BLAST of Csor.00g305660 vs. ExPASy TrEMBL
Match: A0A6J1G2C3 (uncharacterized protein LOC111450028 OS=Cucurbita moschata OX=3662 GN=LOC111450028 PE=3 SV=1)

HSP 1 Score: 196 bits (499), Expect = 1.53e-63
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
          MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL
Sbjct: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60

Query: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 99
          SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
Sbjct: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 99

[Close]

BLAST of Csor.00g305660 vs. ExPASy TrEMBL
Match: A0A6J1HX84 (uncharacterized protein LOC111467483 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467483 PE=3 SV=1)

HSP 1 Score: 190 bits (483), Expect = 4.22e-61
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
          MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKR MTVSDGKL
Sbjct: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKRGMTVSDGKL 60

Query: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 99
          SVHFEAVEARFLRAS SAFLDVLTLAIKTIEDFGQGLDF
Sbjct: 61 SVHFEAVEARFLRASCSAFLDVLTLAIKTIEDFGQGLDF 99

[Close]

BLAST of Csor.00g305660 vs. ExPASy TrEMBL
Match: A0A6J1CHJ5 (uncharacterized protein LOC111011564 OS=Momordica charantia OX=3673 GN=LOC111011564 PE=3 SV=1)

HSP 1 Score: 177 bits (449), Expect = 1.34e-55
Identity = 89/98 (90.82%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
           MAPTASV SDG+AKWEF CDFEVD ESEKKASIVYNAL VDKELQPDKVKREM VSDGKL
Sbjct: 24  MAPTASVASDGEAKWEFRCDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKL 83

Query: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLD 98
           SVHFEAVEARFLRAS+SAF+DVLTLA KTIEDFGQGLD
Sbjct: 84  SVHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGLD 121

[Close]

BLAST of Csor.00g305660 vs. ExPASy TrEMBL
Match: A0A1S3CTG0 (uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=3 SV=1)

HSP 1 Score: 166 bits (421), Expect = 1.21e-51
Identity = 81/99 (81.82%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
          M PTASV SDG+AKWEFSCDFEVD ESEKKASIVYNAL+VDKELQPDKVKR M++S+GKL
Sbjct: 1  MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 99
          S+HFEAVEARFLRAS+S+F+DVLTLA KTIEDFG  ++F
Sbjct: 61 SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

[Close]

BLAST of Csor.00g305660 vs. ExPASy TrEMBL
Match: A0A5D3CJ23 (EKC/KEOPS complex, subunit Pcc1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001520 PE=3 SV=1)

HSP 1 Score: 166 bits (421), Expect = 1.21e-51
Identity = 81/99 (81.82%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
          M PTASV SDG+AKWEFSCDFEVD ESEKKASIVYNAL+VDKELQPDKVKR M++S+GKL
Sbjct: 1  MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 99
          S+HFEAVEARFLRAS+S+F+DVLTLA KTIEDFG  ++F
Sbjct: 61 SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

[Close]

BLAST of Csor.00g305660 vs. TAIR 10
Match: AT5G53045.1 (unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 30; Plants - 41; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 120.9 bits (302), Expect = 5.6e-28
Identity = 59/95 (62.11%), Postives = 74/95 (77.89%), Query Frame = 0


Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
          MA T    +  D  W+FSC+ +V  ESE+ A I Y +L VDKELQPDKV+R M+VS+ KL
Sbjct: 1  MAATVPATTRSDQTWDFSCNLDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKL 60

Query: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQ 96
          SVHFEA+EAR LRAS+SAF+DVLTLA +TI++FGQ
Sbjct: 61 SVHFEAIEARLLRASFSAFVDVLTLATRTIQEFGQ 95

The following BLAST results are available for this feature:

BLAST of Csor.00g305660 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g305660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945934.1	3.16e-63	100.00	uncharacterized protein LOC111450028 [Cucurbita moschata] >XP_023541072.1 unchar...	[more]
XP_022968168.1	8.72e-61	97.98	uncharacterized protein LOC111467483 isoform X2 [Cucurbita maxima]	[more]
XP_022141079.1	2.77e-55	90.82	uncharacterized protein LOC111011564 [Momordica charantia]	[more]
XP_038895564.1	1.10e-54	86.87	uncharacterized protein LOC120083771 [Benincasa hispida]	[more]
XP_023553191.1	6.39e-54	86.87	uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g305660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2C3	1.53e-63	100.00	uncharacterized protein LOC111450028 OS=Cucurbita moschata OX=3662 GN=LOC1114500...	[more]
A0A6J1HX84	4.22e-61	97.98	uncharacterized protein LOC111467483 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1CHJ5	1.34e-55	90.82	uncharacterized protein LOC111011564 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A1S3CTG0	1.21e-51	81.82	uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=...	[more]
A0A5D3CJ23	1.21e-51	81.82	EKC/KEOPS complex, subunit Pcc1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Csor.00g305660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53045.1	5.6e-28	62.11	unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; B...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015419	CTAG/Pcc1 family	PFAM	PF09341	Pcc1	coord: 18..91 e-value: 4.0E-20 score: 71.8
IPR015419	CTAG/Pcc1 family	PANTHER	PTHR31283	EKC/KEOPS COMPLEX SUBUNIT PCC1 FAMILY MEMBER	coord: 11..94
None	No IPR available	GENE3D	3.30.310.50		coord: 7..96 e-value: 7.3E-24 score: 85.6
None	No IPR available	PANTHER	PTHR31283:SF5	GEO08993P1	coord: 11..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g305660.m01	Csor.00g305660.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070525	tRNA threonylcarbamoyladenosine metabolic process
cellular_component	GO:0000408	EKC/KEOPS complex