Csor.00g305460 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g305460
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RNA polymerase sigma factor
Location	Csor_Chr18: 12902889 .. 12906088 (+)
RNA-Seq Expression	Csor.00g305460
Synteny	Csor.00g305460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTTGTGACCGTTTCAAGCTCTGCAGCACGATCTCCTCTTCGGCTGGGTGCAATATTCTCCAATCACAATTTGTCGAAAAGACCATCGATTGTCGCTTTTAAAGTGGATAAGCACACTGACACTACTCTGGTCTCACCTCACGAGCAAGTGATCCTGCCTGTGGAGAGTAATAACAGAAACCAGAAAAGATCAGGAAAAACAAGCAAATCTTTGAAGAGAGTTAAAGCTGTCTTTATTGGTGAAGCTACTCCCTGCACTTTGGATGTGGATTACTATGAGGCTGCTGCTAAACTTGAAAACATATTCAAGCTTAGCTCTGTGACAGAGGATACCGATGTGGAATGTGAAGATGGCAGACCGAAAAGACGCCAGCAAAGGAGGAAAAAACCAGACAAGAGACCAAGTGATGGCATAGTCAGGAACCATACTAGGAGGATTAAGCGACTAGATCTAGACAAGAGGATAGCATTGAAAAGTAACAAGGAGGGCAAAGCAACTCCTTCATTAAGGAAACAAAAAGATACCGTAAGTGAAGCTGATGAAACTGATGATCTTGTTAGAAACTACCCTGCGTCAACTGATATGGCAAGTTTGGACTGGAAAAAAATGAAGATTCCTCCTGTTCTTAGTTCATCAGAGCATACCCGTTTGTTCAAGTTGGTTCAACCAATGAAGGTGAGGCTTAGGAATTCTGATGTTGTAAACAAATTTGAATGGAACTTTGAAAAGTTATCATTCTTGTTCACTGCCAAATAACGTTTTCCTCTGTTAGGAACTTATTCAAGTACAAGAGGAGCTGCAGAAAGAGTTGGGAAGAGAACCAACTGAAGGAGAATTGGTCGATGCAACAAATATGAATGTAATTCAAGTGAGGAGGCAACTGGAGGTTGGTCGTGCTGCCAGAAACAATCTCATCAAGGTAAGAGTGGCTTTCTTCCACAATTAAAGCATTATTGCTTCAGGCTTCTGTGATAACACGTCAGAAATCTAATGGCATACAAGAATGTGACCAAGTTGTAATGGACTTATGTCATAAGAGTACTGTTAAATGTGAAAACGGTGGAACTAATGGTTAGATTTTACATCTGTTGCAGCATAATCTCCGCCTTGTACTGTTTGTGATCAACAAATACTTTGAAGATTTTGCAAGTGGCCCAAAATTTCAAGACCTTTGTCAAGCAGGTGTCAAGGGACTCATGACAGCAATCGACCGCTTTGAGCCAAAGAGGAGATTCCGGCTATCAACTTATGCTTTATTTTGGATAAGACATGCTATTATTCGGTCGATAACTCTCTCAAGCTTCACACGTGTCTCATTTGGACTCGACTCGGTTGGTTCTTATTCCACTTTGGCTTTTTCATTCCTTCATTTTCTGTAATGGAAATGGATTGCCTGCGTTCATTAATCATCATTATGCTTTTCTTCATCACATCATACTGTTGTTGCTGTATGCTGAACAACCAAAGAATGTCACCCTAAACAGAGAAGATACAAAGAGCAATAGAATAAGGGAATATGTAGACTTTGAAGGAAACCTAAAGTTTCATATTGAGAGCATGATCTTGACATCTCTAAGATTCTAGCCACTGTCTAAAGGGGAAGGAAGTTTCTCTTTCCATCTAGTTGTAATTCAAAGAAGCAAGTTTACCACTCTAAGTTTAGAAGCTCTGCATTTGAACAAACTGAAATAGCAAAAAATCACGCTAGAGTAGCTGGATACTCAAGGAAGCAAGCCATAAATCATCTAGCGATCATTTGAGGTAGACTGCAAGAGTTTTTGAGAGATTCATATTCACATCAATTAAACAGTTGAATAGAATCTGTTCACTTTGTTATGTTTTGAATCTAAAACATCGTCTAAACGATACTTGGTGCACATGATGGCATGGATTATTGAGACTGGACCTTTACTTAGTGCAGGTAAGAGTTGATATTCAAAGAGCTAAACTTGAGTTATCATGTGAGCATCATAGATTACCAACAGAGGAAGAGATTATTGCAAAAGTTGGCATCTCGCCTGAGAGGTACCTAGAAGTAATGAGGGCTATAAAACCAGTTTACTCTCTCCATTCTAGGCACTCGACTACATCAGAAGAGTTTATCAATGCGATCACTGATGTAGAAGGTACTGGAGGTGACAACCAGCGGCAACCAGCTCTTCTGAGGCTTGCTCTTGACGATGTGGTAATGTCTCCGTTCAAATCTTGCAGCATGTCCCTTTCCCCTCCAAACCACTACGTTAATCTTCTTTGCTTGGCTTTTGAACATAGCCGGAGATATATATCATCTTTGCTTCCATGATTTAACTTGTGAAATACATTTGGTAAAATGTCTTCTCATCACAAATGCTTGGTTAAAGGCATCTTAGTAGTATGGCACACACTCCTTTGCTTGTTTTAGATGCAACTCATTTGCTCCGCACTACACTTATTTGTCCAAAATCAACGTAAAAGTAGTCTATTTGTAACAACCAAGGCCACCGTTAGTAGATATTGTCCTCTTTGGGCTTTATCTTATGGGCTTTCTCTTATGGGCTTCCCCTTAAGGTTTTAAAACGCGTGTACTATAGAAAGGTTTTCACACCCTTATAAGGAATGTTTCGTTCCCCTCACCAACCAATGTGGGATCTCACAATCCACCCCCCTTGGGGGCCCAGCGTCCTCGCTGACACACGATTCGGTGCCTGGCTCTGATACCTGTCTCTAACATACGCGTTTTAAAATCTTGAGGGGAAGTCCTTGAAGGAAAATCACAAAGAGGACAATATTTGCTAGCTTCGGGCTCGGGCTGTTAGACTGTTAGATTTGCATGGACTTTCCTTTTGGTAGATTTCGTAGGCATTCCTGACTTGGGATTACTTTGAACTCAAATGGTTCTTCATATCAGTGGATAGTAGCTGTCCTTTCTGCTGCATCATTTGATGGGATGCTTAGAAATGCCGTATTCTGCTGATATTTATAATTCTTGATGACCTGATCCTAGAACTGTCTTCCAGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAAAGATACGGTCTTGACGGGAAAGGAAACCGAACATTAGGTGAGATAGCAGGAAATCTAAATATTTCAAGAGAGATGGTGCGGAAGCACGAAGTTAAAGCTCTGATGAAGCTCAAACATCCTGCAAGAGTGGATTACCTTCGTCGGCATTTAATCTGA

mRNA sequence

ATGGGAGTTGTGACCGTTTCAAGCTCTGCAGCACGATCTCCTCTTCGGCTGGGTGCAATATTCTCCAATCACAATTTGTCGAAAAGACCATCGATTGTCGCTTTTAAAGTGGATAAGCACACTGACACTACTCTGGTCTCACCTCACGAGCAAGTGATCCTGCCTGTGGAGAGTAATAACAGAAACCAGAAAAGATCAGGAAAAACAAGCAAATCTTTGAAGAGAGTTAAAGCTGTCTTTATTGGTGAAGCTACTCCCTGCACTTTGGATGTGGATTACTATGAGGCTGCTGCTAAACTTGAAAACATATTCAAGCTTAGCTCTGTGACAGAGGATACCGATGTGGAATGTGAAGATGGCAGACCGAAAAGACGCCAGCAAAGGAGGAAAAAACCAGACAAGAGACCAAGTGATGGCATAGTCAGGAACCATACTAGGAGGATTAAGCGACTAGATCTAGACAAGAGGATAGCATTGAAAAGTAACAAGGAGGGCAAAGCAACTCCTTCATTAAGGAAACAAAAAGATACCGTAAGTGAAGCTGATGAAACTGATGATCTTGTTAGAAACTACCCTGCGTCAACTGATATGGCAAGTTTGGACTGGAAAAAAATGAAGATTCCTCCTGTTCTTAGTTCATCAGAGCATACCCGTTTGTTCAAGTTGGTTCAACCAATGAAGGAACTTATTCAAGTACAAGAGGAGCTGCAGAAAGAGTTGGGAAGAGAACCAACTGAAGGAGAATTGGTCGATGCAACAAATATGAATGTAATTCAAGTGAGGAGGCAACTGGAGGTTGGTCGTGCTGCCAGAAACAATCTCATCAAGCATAATCTCCGCCTTGTACTGTTTGTGATCAACAAATACTTTGAAGATTTTGCAAGTGGCCCAAAATTTCAAGACCTTTGTCAAGCAGGTGTCAAGGGACTCATGACAGCAATCGACCGCTTTGAGCCAAAGAGGAGATTCCGGCTATCAACTTATGCTTTATTTTGGATAAGACATGCTATTATTCGGTCGATAACTCTCTCAAGCTTCACACGTGTCTCATTTGGACTCGACTCGGTAAGAGTTGATATTCAAAGAGCTAAACTTGAGTTATCATGTGAGCATCATAGATTACCAACAGAGGAAGAGATTATTGCAAAAGTTGGCATCTCGCCTGAGAGGTACCTAGAAGTAATGAGGGCTATAAAACCAGTTTACTCTCTCCATTCTAGGCACTCGACTACATCAGAAGAGTTTATCAATGCGATCACTGATGTAGAAGGTACTGGAGGTGACAACCAGCGGCAACCAGCTCTTCTGAGGCTTGCTCTTGACGATGTGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAAAGATACGGTCTTGACGGGAAAGGAAACCGAACATTAGGTGAGATAGCAGGAAATCTAAATATTTCAAGAGAGATGGTGCGGAAGCACGAAGTTAAAGCTCTGATGAAGCTCAAACATCCTGCAAGAGTGGATTACCTTCGTCGGCATTTAATCTGA

Coding sequence (CDS)

ATGGGAGTTGTGACCGTTTCAAGCTCTGCAGCACGATCTCCTCTTCGGCTGGGTGCAATATTCTCCAATCACAATTTGTCGAAAAGACCATCGATTGTCGCTTTTAAAGTGGATAAGCACACTGACACTACTCTGGTCTCACCTCACGAGCAAGTGATCCTGCCTGTGGAGAGTAATAACAGAAACCAGAAAAGATCAGGAAAAACAAGCAAATCTTTGAAGAGAGTTAAAGCTGTCTTTATTGGTGAAGCTACTCCCTGCACTTTGGATGTGGATTACTATGAGGCTGCTGCTAAACTTGAAAACATATTCAAGCTTAGCTCTGTGACAGAGGATACCGATGTGGAATGTGAAGATGGCAGACCGAAAAGACGCCAGCAAAGGAGGAAAAAACCAGACAAGAGACCAAGTGATGGCATAGTCAGGAACCATACTAGGAGGATTAAGCGACTAGATCTAGACAAGAGGATAGCATTGAAAAGTAACAAGGAGGGCAAAGCAACTCCTTCATTAAGGAAACAAAAAGATACCGTAAGTGAAGCTGATGAAACTGATGATCTTGTTAGAAACTACCCTGCGTCAACTGATATGGCAAGTTTGGACTGGAAAAAAATGAAGATTCCTCCTGTTCTTAGTTCATCAGAGCATACCCGTTTGTTCAAGTTGGTTCAACCAATGAAGGAACTTATTCAAGTACAAGAGGAGCTGCAGAAAGAGTTGGGAAGAGAACCAACTGAAGGAGAATTGGTCGATGCAACAAATATGAATGTAATTCAAGTGAGGAGGCAACTGGAGGTTGGTCGTGCTGCCAGAAACAATCTCATCAAGCATAATCTCCGCCTTGTACTGTTTGTGATCAACAAATACTTTGAAGATTTTGCAAGTGGCCCAAAATTTCAAGACCTTTGTCAAGCAGGTGTCAAGGGACTCATGACAGCAATCGACCGCTTTGAGCCAAAGAGGAGATTCCGGCTATCAACTTATGCTTTATTTTGGATAAGACATGCTATTATTCGGTCGATAACTCTCTCAAGCTTCACACGTGTCTCATTTGGACTCGACTCGGTAAGAGTTGATATTCAAAGAGCTAAACTTGAGTTATCATGTGAGCATCATAGATTACCAACAGAGGAAGAGATTATTGCAAAAGTTGGCATCTCGCCTGAGAGGTACCTAGAAGTAATGAGGGCTATAAAACCAGTTTACTCTCTCCATTCTAGGCACTCGACTACATCAGAAGAGTTTATCAATGCGATCACTGATGTAGAAGGTACTGGAGGTGACAACCAGCGGCAACCAGCTCTTCTGAGGCTTGCTCTTGACGATGTGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAAAGATACGGTCTTGACGGGAAAGGAAACCGAACATTAGGTGAGATAGCAGGAAATCTAAATATTTCAAGAGAGATGGTGCGGAAGCACGAAGTTAAAGCTCTGATGAAGCTCAAACATCCTGCAAGAGTGGATTACCTTCGTCGGCATTTAATCTGA

Protein sequence

MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNNRNQKRSGKTSKSLKRVKAVFIGEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAITDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHLI

Homology

[Close]

BLAST of Csor.00g305460 vs. ExPASy Swiss-Prot
Match: Q9ZNX9 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SIGE PE=1 SV=1)

HSP 1 Score: 577.4 bits (1487), Expect = 1.6e-163
Identity = 315/517 (60.93%), Postives = 395/517 (76.40%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNLS-KRPSIVAFKVDKHTDTTL-VSPHEQVILPVES 60
           MGVV++SSSAARSPL LG     H  S K+PSIVAFK D  +++ L + P EQV++P E 
Sbjct: 1   MGVVSISSSAARSPLGLGNDLLTHRSSLKKPSIVAFKADDSSNSALIIPPREQVLIPAEK 60

Query: 61  NNRNQKR--SGKTSKSLKRVKAVFIGEATPCTLDVDYYEAAAKLENIFKLSSVTE---DT 120
           +N  ++     K  K+ K+  ++    A  C+L VDY EAAA+LE+I+KLS  T    + 
Sbjct: 61  HNEKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVED 120

Query: 121 DVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRK 180
           DVE    + K  ++R++K        +VRN+ ++ KR+ LDKRIALK N + K   +   
Sbjct: 121 DVEDGGSKAKVSRRRKRKESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQEKPVVASVD 180

Query: 181 QKDT--VSEADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQ 240
           +K T    E ++ + LVR+Y AS D+ SLDWKKMKIPPVLSS+EH  LFKL+QPMK L++
Sbjct: 181 KKVTKRQQEEEKIERLVRDYSASNDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLE 240

Query: 241 VQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFE 300
           V++ LQK LGREP E E+    NM   +V++++E+GRAARN LIKHNLRLVLFV+NKYF 
Sbjct: 241 VKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFH 300

Query: 301 DFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSF 360
           +F +GPKFQDLCQAG++GL+TAIDRFEPKR+FRLSTY LFWIRHAIIRS+T S+FTRV F
Sbjct: 301 EFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPF 360

Query: 361 GLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTT 420
           GL+SVRV+I +AK EL  E  R PTE+E++ ++ I+PERY EV+RA KPV SL+S+HS T
Sbjct: 361 GLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVT 420

Query: 421 SEEFINAITDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGE 480
            EEFIN ITDV+G G +N RQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKG+RTLGE
Sbjct: 421 QEEFINGITDVDGVGANNSRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE 480

Query: 481 IAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHLI 509
           IAGNLNISREMVRKHEVKALMKLKH ARVDYLR++++
Sbjct: 481 IAGNLNISREMVRKHEVKALMKLKHQARVDYLRQYIV 517

[Close]

BLAST of Csor.00g305460 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.1e-38
Identity = 114/346 (32.95%), Postives = 182/346 (52.60%), Query Frame = 0


Query: 163 KEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKL 222
           K GKA  S R+ +    +   T+D +R Y        L          L + E   L + 
Sbjct: 59  KSGKAAKSRRRTQS--KKKHYTEDSIRLYLQEIGRIRL----------LRADEEIELARK 118

Query: 223 VQPMKELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLV 282
           +  + EL +V+E L ++L R+P + E  +A  + +   R +L +GR A++ +++ NLRLV
Sbjct: 119 IADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLV 178

Query: 283 LFVINKYFEDFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSIT 342
           + +  KY      G  FQDL Q G  GL+ A ++F+ ++ ++ STYA +WIR AI R+I 
Sbjct: 179 VSIAKKYMN---RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIA 238

Query: 343 LSSFT-RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPV 402
             S T R+   L      I++    LS E  R PTEEEI  ++ ++ E+   + ++ +  
Sbjct: 239 DQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLP 298

Query: 403 YSLHSRHSTTSEEFINAITDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGL 462
            SL +      +  +    + +G   ++Q    LLR  L+ VLDSL P+E  V+R RYGL
Sbjct: 299 ISLETPIGKEEDSRLGDFIESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGL 358

Query: 463 DGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHL 508
           D    +TL EI    N++RE +R+ E KAL KL+HP R   L+ ++
Sbjct: 359 DDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389

[Close]

BLAST of Csor.00g305460 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 146.0 bits (367), Expect = 1.2e-33
Identity = 119/406 (29.31%), Postives = 199/406 (49.01%), Query Frame = 0


Query: 106 LSSVTEDTDVECEDGRPKRRQQRRKKPDK---RPSDGIVRNHTRRIKRLDLDKRIALKSN 165
           ++  TE  D   +    K ++  RKK       P+  I    T  +  +D +  +    +
Sbjct: 16  MTQATELLDPALKPAETKAKRSSRKKATTAVVEPATTIA--PTADVDAIDDEDSVGEDED 75

Query: 166 KEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKL 225
              KA   +RK          T+D +R Y        L          L + E   L + 
Sbjct: 76  AAAKAKAKVRK--------TYTEDSIRLYLQEIGRIRL----------LRADEEIELARQ 135

Query: 226 VQPMKELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLV 285
           +  +  L ++++EL ++L R P++ E   A +  + + RR+L  GR A++ +++ NLRLV
Sbjct: 136 IADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLV 195

Query: 286 LFVINKYFEDFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSIT 345
           + +  KY      G  FQDL Q G  GL+ A ++F+ ++ ++ STYA +WIR AI R+I 
Sbjct: 196 VSIAKKYMN---RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIA 255

Query: 346 LSSFT-RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPV 405
             S T R+   L      I++    LS E  R PTEEEI  ++ ++ E+   + ++ +  
Sbjct: 256 DQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLP 315

Query: 406 YSLHSRHSTTSEEFINAITDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGL 465
            SL +      +  +    + +G   +++    LLR  L+ VL +L P+E  V+R RYGL
Sbjct: 316 ISLETPIGKEEDSRLGDFIEADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGL 375

Query: 466 DGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHL 508
           D    +TL EI    N++RE +R+ E KAL KL+HP R   L+ ++
Sbjct: 376 DDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398

[Close]

BLAST of Csor.00g305460 vs. ExPASy Swiss-Prot
Match: P74565 (RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sigA PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 7.6e-33
Identity = 116/401 (28.93%), Postives = 186/401 (46.38%), Query Frame = 0


Query: 152 DLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASLDWKKMKIPPVL 211
           DL++ +A    KE K     + +KD V +   T+D +R Y        L          L
Sbjct: 40  DLEQEVAATEGKEKKVR---KIRKDAVKKKPYTEDSIRIYLQEIGRIRL----------L 99

Query: 212 SSSEHTRLFKLVQPMKELIQVQEELQKELGREPT-------------------------- 271
            + E   L + +  + EL  +++ L  +L R+P+                          
Sbjct: 100 RAEEEIELARQIADLLELELIRDNLTLQLERQPSELEWGKQVWKLETAKQRLVGDKKKEP 159

Query: 272 ------------------EGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVIN 331
                             E E     N N    RR+L + R A++ +++ NLRLV+ +  
Sbjct: 160 KKKDIDSYLANPDNELSLENEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAK 219

Query: 332 KYFEDFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFT 391
           KY      G  FQDL Q G  GL+ A ++F+ ++ ++ STYA +WIR AI R+I   S T
Sbjct: 220 KYMN---RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 279

Query: 392 -RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHS 451
            R+   L      I++    LS E  R PTEEEI  K+ ++ E+   + ++ +   SL +
Sbjct: 280 IRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLET 339

Query: 452 RHSTTSEEFINAITDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGN 508
                 +  +    + +G   +++    LLR  L++VLD+L P+E  V+R RYGLD    
Sbjct: 340 PIGKEEDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRM 399

[Close]

BLAST of Csor.00g305460 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 7.2e-31
Identity = 110/391 (28.13%), Postives = 196/391 (50.13%), Query Frame = 0


Query: 125 RQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLR-----KQKDTVS 184
           +Q+  +  +++PS  +    TR+ +R     R A    K     PS++     K+K  V+
Sbjct: 195 KQEEVELLEEQPSVSLAVRSTRQTER---KARRAKGLEKTASGIPSVKTGSSPKKKRLVA 254

Query: 185 EADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 244
           +  + +D +R    +T  + L          L+  E   L   +Q + +L ++Q EL + 
Sbjct: 255 QEVDHNDPLRYLRMTTSSSKL----------LTVREEHELSAGIQDLLKLERLQTELTER 314

Query: 245 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKF 304
            GR+PT  +   A  ++   +R+++  G   ++ +IK N+RLV+ +   Y     +G   
Sbjct: 315 SGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNY---QGAGMNL 374

Query: 305 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSIT-LSSFTRVSFGLDSVRV 364
           QDL Q G +GL+   ++F+  + F+ STYA +WI+ A+ +S++  S   R+ F +     
Sbjct: 375 QDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATY 434

Query: 365 DIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSE-EFIN 424
            ++ A+ +L  E  + P  EEI    G+S +R + V+ + KP  SL  +       +   
Sbjct: 435 RVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSE 494

Query: 425 AITDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLN 484
            I D E    ++      +R  LD VLDSL  +E  VIR R+G++    +TL EI   + 
Sbjct: 495 VIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMG 554

Query: 485 ISREMVRKHEVKALMKLKHPARVDYLRRHLI 509
           +SRE VR+ E  A  KLK+  R ++L+++L+
Sbjct: 555 VSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]

BLAST of Csor.00g305460 vs. NCBI nr
Match: KAG6574228.1 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013296.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 977 bits (2525), Expect = 0.0
Identity = 508/508 (100.00%), Postives = 508/508 (100.00%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNN 60
           MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNN
Sbjct: 1   MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNN 60

Query: 61  RNQKRSGKTSKSLKRVKAVFIGEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECEDG 120
           RNQKRSGKTSKSLKRVKAVFIGEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECEDG
Sbjct: 61  RNQKRSGKTSKSLKRVKAVFIGEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECEDG 120

Query: 121 RPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSE 180
           RPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSE
Sbjct: 121 RPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSE 180

Query: 181 ADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKEL 240
           ADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKEL
Sbjct: 181 ADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKEL 240

Query: 241 GREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQ 300
           GREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQ
Sbjct: 241 GREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQ 300

Query: 301 DLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDI 360
           DLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDI
Sbjct: 301 DLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDI 360

Query: 361 QRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAIT 420
           QRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAIT
Sbjct: 361 QRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAIT 420

Query: 421 DVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISR 480
           DVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISR
Sbjct: 421 DVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISR 480

Query: 481 EMVRKHEVKALMKLKHPARVDYLRRHLI 508
           EMVRKHEVKALMKLKHPARVDYLRRHLI
Sbjct: 481 EMVRKHEVKALMKLKHPARVDYLRRHLI 508

[Close]

BLAST of Csor.00g305460 vs. NCBI nr
Match: XP_022945188.1 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita moschata] >XP_022945189.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita moschata] >XP_022945190.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 970 bits (2507), Expect = 0.0
Identity = 505/508 (99.41%), Postives = 506/508 (99.61%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNN 60
           MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN+
Sbjct: 1   MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNS 60

Query: 61  RNQKRSGKTSKSLKRVKAVFIGEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECEDG 120
           RNQKRSGKTSKSLKRVKAVFI EATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECEDG
Sbjct: 61  RNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECEDG 120

Query: 121 RPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSE 180
           RPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSE
Sbjct: 121 RPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSE 180

Query: 181 ADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKEL 240
           ADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKEL
Sbjct: 181 ADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKEL 240

Query: 241 GREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQ 300
           GREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQ
Sbjct: 241 GREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQ 300

Query: 301 DLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDI 360
           DLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDI
Sbjct: 301 DLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDI 360

Query: 361 QRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAIT 420
           QRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAIT
Sbjct: 361 QRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAIT 420

Query: 421 DVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISR 480
           DVE TGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISR
Sbjct: 421 DVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISR 480

Query: 481 EMVRKHEVKALMKLKHPARVDYLRRHLI 508
           EMVRKHEVKALMKLKHPARVDYLRRHLI
Sbjct: 481 EMVRKHEVKALMKLKHPARVDYLRRHLI 508

[Close]

BLAST of Csor.00g305460 vs. NCBI nr
Match: XP_022968276.1 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita maxima] >XP_022968277.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita maxima] >XP_022968278.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 963 bits (2489), Expect = 0.0
Identity = 500/508 (98.43%), Postives = 503/508 (99.02%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNN 60
           MGVVTVSSSAARSPLRLGAIFSNHN SKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNN
Sbjct: 1   MGVVTVSSSAARSPLRLGAIFSNHNSSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNN 60

Query: 61  RNQKRSGKTSKSLKRVKAVFIGEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECEDG 120
           RNQKRSGKTSKSLKRVKAVFI EATPCTLDVDYYEAAAKLENIFKLSSVTEDTD+ECEDG
Sbjct: 61  RNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDLECEDG 120

Query: 121 RPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSE 180
           RPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKA PSLRKQKDTVSE
Sbjct: 121 RPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKAAPSLRKQKDTVSE 180

Query: 181 ADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKEL 240
           ADETDDLVRNYP STDM SLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKEL
Sbjct: 181 ADETDDLVRNYPVSTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKEL 240

Query: 241 GREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQ 300
           GREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQ
Sbjct: 241 GREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQ 300

Query: 301 DLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDI 360
           DLCQAGVKGL+TAIDRFEPKRRFRLSTYALFWIRHAIIRS+TLSSFTRVSFGLDSVRVDI
Sbjct: 301 DLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVDI 360

Query: 361 QRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAIT 420
           QRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAIT
Sbjct: 361 QRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAIT 420

Query: 421 DVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISR 480
           DVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISR
Sbjct: 421 DVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISR 480

Query: 481 EMVRKHEVKALMKLKHPARVDYLRRHLI 508
           EMVRKHEVKALMKLKHPARVDYLRRHLI
Sbjct: 481 EMVRKHEVKALMKLKHPARVDYLRRHLI 508

[Close]

BLAST of Csor.00g305460 vs. NCBI nr
Match: XP_023543020.1 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 957 bits (2473), Expect = 0.0
Identity = 500/509 (98.23%), Postives = 502/509 (98.62%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNLS-KRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60
           MGVVTVSSSAARSPLRLGAIFSNHN S KRPSIVAFKVDKHTDTTLVSPHEQVILPVESN
Sbjct: 1   MGVVTVSSSAARSPLRLGAIFSNHNSSSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60

Query: 61  NRNQKRSGKTSKSLKRVKAVFIGEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECED 120
           NRNQKRSGKTSKSLKRVKAVFI EATPCT DVDYYEAAAKLENIFKLSSVTEDTDVECED
Sbjct: 61  NRNQKRSGKTSKSLKRVKAVFIDEATPCTWDVDYYEAAAKLENIFKLSSVTEDTDVECED 120

Query: 121 GRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVS 180
           GRPKRRQQRRKKPDKRP DGIVRNHTRRIKRLDLDKRIALKSNKE KATPSLRKQKDTVS
Sbjct: 121 GRPKRRQQRRKKPDKRPGDGIVRNHTRRIKRLDLDKRIALKSNKEDKATPSLRKQKDTVS 180

Query: 181 EADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240
           EADETDDLVRNYPASTDM SLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE
Sbjct: 181 EADETDDLVRNYPASTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240

Query: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKF 300
           LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFA+GPKF
Sbjct: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFATGPKF 300

Query: 301 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVD 360
           QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRS+TLSSFTRVSFGLDSVRVD
Sbjct: 301 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVD 360

Query: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420
           IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI
Sbjct: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420

Query: 421 TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480
           TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS
Sbjct: 421 TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480

Query: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 508
           REMVRKHEVKALMKLKHPARVDYLRRHLI
Sbjct: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 509

[Close]

BLAST of Csor.00g305460 vs. NCBI nr
Match: XP_038903010.1 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Benincasa hispida] >XP_038903018.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 865 bits (2234), Expect = 4.83e-314
Identity = 455/509 (89.39%), Postives = 476/509 (93.52%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNLS-KRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60
           MGVVTVSSSAARSP RLGA F+NHN + KRPSIVAFK DKHT+TTLVSPHEQV LPVESN
Sbjct: 1   MGVVTVSSSAARSPFRLGAKFTNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRNQKRSGKTSKSLKRVKAVFIGEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECED 120
           N N+KRSGKTSK LKRVKAV I EATPCTLDVDY EAAAKLENIFKLS VTEDTD+E +D
Sbjct: 61  NINKKRSGKTSKPLKRVKAVLIDEATPCTLDVDYNEAAAKLENIFKLSPVTEDTDMESKD 120

Query: 121 GRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVS 180
           GR KR QQRRKK DKR SDGIVRN T+RIKRLDLDKRIAL+SNKEGKA PSLRKQKDT +
Sbjct: 121 GRSKRGQQRRKKSDKRQSDGIVRNQTKRIKRLDLDKRIALRSNKEGKAAPSLRKQKDTKN 180

Query: 181 EADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240
           E DE D LVR+Y ASTD+ SLDWKKMKIPPVL SSEHTRLFKLVQPMK LIQVQEELQKE
Sbjct: 181 EDDEIDCLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEELQKE 240

Query: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKF 300
           LGREPTEGEL + TNMNVIQVRRQLEVGRAARN LIKHNLRLVLFVINKYFEDFASGPKF
Sbjct: 241 LGREPTEGELANVTNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF 300

Query: 301 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVD 360
           QDLCQAGVKGL+TAIDRFEPKR+FRLSTYALFWIRHAIIRS+TLSSFTRVSFGLDSVRV+
Sbjct: 301 QDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVE 360

Query: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420
           IQ+AKLELSCE HRLPTEEEIIAKVGISPERYLEVMRA KPVYSLHS+HSTTSEEFIN I
Sbjct: 361 IQKAKLELSCELHRLPTEEEIIAKVGISPERYLEVMRATKPVYSLHSKHSTTSEEFINGI 420

Query: 421 TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480
           TDVEGTGGDN+RQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS
Sbjct: 421 TDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480

Query: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 508
           REMVRKHEVKALMKLKHPARVDYLRR+L+
Sbjct: 481 REMVRKHEVKALMKLKHPARVDYLRRYLV 509

[Close]

BLAST of Csor.00g305460 vs. ExPASy TrEMBL
Match: A0A6J1G085 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111449507 PE=3 SV=1)

HSP 1 Score: 970 bits (2507), Expect = 0.0
Identity = 505/508 (99.41%), Postives = 506/508 (99.61%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNN 60
           MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN+
Sbjct: 1   MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNS 60

Query: 61  RNQKRSGKTSKSLKRVKAVFIGEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECEDG 120
           RNQKRSGKTSKSLKRVKAVFI EATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECEDG
Sbjct: 61  RNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECEDG 120

Query: 121 RPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSE 180
           RPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSE
Sbjct: 121 RPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSE 180

Query: 181 ADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKEL 240
           ADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKEL
Sbjct: 181 ADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKEL 240

Query: 241 GREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQ 300
           GREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQ
Sbjct: 241 GREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQ 300

Query: 301 DLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDI 360
           DLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDI
Sbjct: 301 DLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDI 360

Query: 361 QRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAIT 420
           QRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAIT
Sbjct: 361 QRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAIT 420

Query: 421 DVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISR 480
           DVE TGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISR
Sbjct: 421 DVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISR 480

Query: 481 EMVRKHEVKALMKLKHPARVDYLRRHLI 508
           EMVRKHEVKALMKLKHPARVDYLRRHLI
Sbjct: 481 EMVRKHEVKALMKLKHPARVDYLRRHLI 508

[Close]

BLAST of Csor.00g305460 vs. ExPASy TrEMBL
Match: A0A6J1HXK0 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111467558 PE=3 SV=1)

HSP 1 Score: 963 bits (2489), Expect = 0.0
Identity = 500/508 (98.43%), Postives = 503/508 (99.02%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNN 60
           MGVVTVSSSAARSPLRLGAIFSNHN SKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNN
Sbjct: 1   MGVVTVSSSAARSPLRLGAIFSNHNSSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNN 60

Query: 61  RNQKRSGKTSKSLKRVKAVFIGEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECEDG 120
           RNQKRSGKTSKSLKRVKAVFI EATPCTLDVDYYEAAAKLENIFKLSSVTEDTD+ECEDG
Sbjct: 61  RNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDLECEDG 120

Query: 121 RPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSE 180
           RPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKA PSLRKQKDTVSE
Sbjct: 121 RPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKAAPSLRKQKDTVSE 180

Query: 181 ADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKEL 240
           ADETDDLVRNYP STDM SLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKEL
Sbjct: 181 ADETDDLVRNYPVSTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKEL 240

Query: 241 GREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQ 300
           GREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQ
Sbjct: 241 GREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQ 300

Query: 301 DLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDI 360
           DLCQAGVKGL+TAIDRFEPKRRFRLSTYALFWIRHAIIRS+TLSSFTRVSFGLDSVRVDI
Sbjct: 301 DLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVDI 360

Query: 361 QRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAIT 420
           QRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAIT
Sbjct: 361 QRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAIT 420

Query: 421 DVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISR 480
           DVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISR
Sbjct: 421 DVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISR 480

Query: 481 EMVRKHEVKALMKLKHPARVDYLRRHLI 508
           EMVRKHEVKALMKLKHPARVDYLRRHLI
Sbjct: 481 EMVRKHEVKALMKLKHPARVDYLRRHLI 508

[Close]

BLAST of Csor.00g305460 vs. ExPASy TrEMBL
Match: A0A6J1E518 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430670 PE=3 SV=1)

HSP 1 Score: 860 bits (2222), Expect = 1.55e-312
Identity = 456/510 (89.41%), Postives = 474/510 (92.94%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNLS--KRPSIVAFKVDKHTDTTLVSPHEQVILPVES 60
           MGVVTVSSSAAR+P RLG  FSN N+S  KRPSIVAFKVDKHT+TTLVSPHEQV LPVES
Sbjct: 1   MGVVTVSSSAARTPFRLGGKFSN-NISALKRPSIVAFKVDKHTNTTLVSPHEQVTLPVES 60

Query: 61  NNRNQKRSGKTSKSLKRVKAVFIGEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECE 120
           NNRNQKR+GK+SKSLKRVKAV I EATPCT DVDY EAAAKLENIFKLS VTEDTD+E E
Sbjct: 61  NNRNQKRTGKSSKSLKRVKAVLIDEATPCTSDVDYNEAAAKLENIFKLSPVTEDTDMENE 120

Query: 121 DGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTV 180
           DGRPKR QQRRKK  KRP DG+VRN T+RIKRLDLDKRIALKSNKEGK+ PSL KQKDT 
Sbjct: 121 DGRPKRGQQRRKKLGKRPCDGVVRNQTKRIKRLDLDKRIALKSNKEGKSAPSLSKQKDTK 180

Query: 181 SEADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQK 240
           SEADE DDLVRNY ASTD+ SLDWKKMKIPPVL SSEHTRLFKLVQPMK LIQ QEELQK
Sbjct: 181 SEADEIDDLVRNYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQAQEELQK 240

Query: 241 ELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPK 300
            LGREPTEGEL +ATNMNVIQVRRQLEVGRAARN LIKHNLRLVLFVINKYFEDFASGPK
Sbjct: 241 GLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK 300

Query: 301 FQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRV 360
           FQDLCQAGVKGL+TAIDRFEPKRRFRLSTYALFWIRHAIIRS+TLSSFTRVSFGLDSVRV
Sbjct: 301 FQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV 360

Query: 361 DIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINA 420
           +IQRAKLEL CE HRLPTEEE+IAKVGISPERYLEVMRA KPVYSLHSRHSTTSEEFI+ 
Sbjct: 361 EIQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVMRATKPVYSLHSRHSTTSEEFISG 420

Query: 421 ITDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI 480
           I DVEGTGGDN+RQ ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI
Sbjct: 421 IADVEGTGGDNRRQSALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI 480

Query: 481 SREMVRKHEVKALMKLKHPARVDYLRRHLI 508
           SREMVRKHEVKALMKLKHPARVDYLRR+LI
Sbjct: 481 SREMVRKHEVKALMKLKHPARVDYLRRYLI 509

[Close]

BLAST of Csor.00g305460 vs. ExPASy TrEMBL
Match: A0A6J1E9R5 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430670 PE=3 SV=1)

HSP 1 Score: 860 bits (2222), Expect = 2.09e-312
Identity = 456/510 (89.41%), Postives = 474/510 (92.94%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNLS--KRPSIVAFKVDKHTDTTLVSPHEQVILPVES 60
           MGVVTVSSSAAR+P RLG  FSN N+S  KRPSIVAFKVDKHT+TTLVSPHEQV LPVES
Sbjct: 9   MGVVTVSSSAARTPFRLGGKFSN-NISALKRPSIVAFKVDKHTNTTLVSPHEQVTLPVES 68

Query: 61  NNRNQKRSGKTSKSLKRVKAVFIGEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECE 120
           NNRNQKR+GK+SKSLKRVKAV I EATPCT DVDY EAAAKLENIFKLS VTEDTD+E E
Sbjct: 69  NNRNQKRTGKSSKSLKRVKAVLIDEATPCTSDVDYNEAAAKLENIFKLSPVTEDTDMENE 128

Query: 121 DGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTV 180
           DGRPKR QQRRKK  KRP DG+VRN T+RIKRLDLDKRIALKSNKEGK+ PSL KQKDT 
Sbjct: 129 DGRPKRGQQRRKKLGKRPCDGVVRNQTKRIKRLDLDKRIALKSNKEGKSAPSLSKQKDTK 188

Query: 181 SEADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQK 240
           SEADE DDLVRNY ASTD+ SLDWKKMKIPPVL SSEHTRLFKLVQPMK LIQ QEELQK
Sbjct: 189 SEADEIDDLVRNYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQAQEELQK 248

Query: 241 ELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPK 300
            LGREPTEGEL +ATNMNVIQVRRQLEVGRAARN LIKHNLRLVLFVINKYFEDFASGPK
Sbjct: 249 GLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPK 308

Query: 301 FQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRV 360
           FQDLCQAGVKGL+TAIDRFEPKRRFRLSTYALFWIRHAIIRS+TLSSFTRVSFGLDSVRV
Sbjct: 309 FQDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV 368

Query: 361 DIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINA 420
           +IQRAKLEL CE HRLPTEEE+IAKVGISPERYLEVMRA KPVYSLHSRHSTTSEEFI+ 
Sbjct: 369 EIQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVMRATKPVYSLHSRHSTTSEEFISG 428

Query: 421 ITDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI 480
           I DVEGTGGDN+RQ ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI
Sbjct: 429 IADVEGTGGDNRRQSALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNI 488

Query: 481 SREMVRKHEVKALMKLKHPARVDYLRRHLI 508
           SREMVRKHEVKALMKLKHPARVDYLRR+LI
Sbjct: 489 SREMVRKHEVKALMKLKHPARVDYLRRYLI 517

[Close]

BLAST of Csor.00g305460 vs. ExPASy TrEMBL
Match: A0A6J1J8N6 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482757 PE=3 SV=1)

HSP 1 Score: 857 bits (2215), Expect = 1.80e-311
Identity = 453/509 (89.00%), Postives = 472/509 (92.73%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNH-NLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60
           MGVVTVSSSAAR+P RLG  FSN+ + SKRPSIVAFKVDKHT+ TLVSPHEQV LPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLGGKFSNNISASKRPSIVAFKVDKHTNATLVSPHEQVTLPVESN 60

Query: 61  NRNQKRSGKTSKSLKRVKAVFIGEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECED 120
           NRNQKR+GKTSKSLKRVKAV I EATPCT DVDY EAAAKLENIFKLS VTEDTD+E ED
Sbjct: 61  NRNQKRTGKTSKSLKRVKAVLIDEATPCTSDVDYNEAAAKLENIFKLSPVTEDTDMENED 120

Query: 121 GRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVS 180
           GRPKR QQRRKK  KRP DG+VRN T+RIKRLDLD+RIALKSNKEGK+ PSL  QKDT S
Sbjct: 121 GRPKRVQQRRKKLGKRPCDGVVRNQTKRIKRLDLDRRIALKSNKEGKSAPSLSIQKDTKS 180

Query: 181 EADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240
           EADE DDLVRNY ASTD+ SLDWKKMKIPPVL SSEHTRLFKLVQPMK LIQ QEELQK 
Sbjct: 181 EADEIDDLVRNYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQAQEELQKG 240

Query: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKF 300
           LGREPTEGEL +ATNMNVIQVRRQLEVGRAARN LIKHNLRLVLFVINKYFEDFASGPKF
Sbjct: 241 LGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF 300

Query: 301 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVD 360
           QDLCQAGVKGL+TAIDRFEPKRRFRLSTYALFWIRHAIIRS+TLSSFTRVSFGLDSVRV+
Sbjct: 301 QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVE 360

Query: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420
           IQRAKLEL CE HRLPTEEE+IAKVGISPERYLEVMRA KPVYSLHSRHSTTSEEFI+ I
Sbjct: 361 IQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVMRATKPVYSLHSRHSTTSEEFISGI 420

Query: 421 TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480
            DVEGTGGDN+RQ ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS
Sbjct: 421 ADVEGTGGDNRRQSALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480

Query: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 508
           REMVRKHEVKALMKLKHPARVDYLRR+LI
Sbjct: 481 REMVRKHEVKALMKLKHPARVDYLRRYLI 509

[Close]

BLAST of Csor.00g305460 vs. TAIR 10
Match: AT5G24120.1 (sigma factor E )

HSP 1 Score: 577.4 bits (1487), Expect = 1.1e-164
Identity = 315/517 (60.93%), Postives = 395/517 (76.40%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNLS-KRPSIVAFKVDKHTDTTL-VSPHEQVILPVES 60
           MGVV++SSSAARSPL LG     H  S K+PSIVAFK D  +++ L + P EQV++P E 
Sbjct: 1   MGVVSISSSAARSPLGLGNDLLTHRSSLKKPSIVAFKADDSSNSALIIPPREQVLIPAEK 60

Query: 61  NNRNQKR--SGKTSKSLKRVKAVFIGEATPCTLDVDYYEAAAKLENIFKLSSVTE---DT 120
           +N  ++     K  K+ K+  ++    A  C+L VDY EAAA+LE+I+KLS  T    + 
Sbjct: 61  HNEKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVED 120

Query: 121 DVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRK 180
           DVE    + K  ++R++K        +VRN+ ++ KR+ LDKRIALK N + K   +   
Sbjct: 121 DVEDGGSKAKVSRRRKRKESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQEKPVVASVD 180

Query: 181 QKDT--VSEADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQ 240
           +K T    E ++ + LVR+Y AS D+ SLDWKKMKIPPVLSS+EH  LFKL+QPMK L++
Sbjct: 181 KKVTKRQQEEEKIERLVRDYSASNDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLE 240

Query: 241 VQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFE 300
           V++ LQK LGREP E E+    NM   +V++++E+GRAARN LIKHNLRLVLFV+NKYF 
Sbjct: 241 VKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFH 300

Query: 301 DFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSF 360
           +F +GPKFQDLCQAG++GL+TAIDRFEPKR+FRLSTY LFWIRHAIIRS+T S+FTRV F
Sbjct: 301 EFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPF 360

Query: 361 GLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTT 420
           GL+SVRV+I +AK EL  E  R PTE+E++ ++ I+PERY EV+RA KPV SL+S+HS T
Sbjct: 361 GLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVT 420

Query: 421 SEEFINAITDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGE 480
            EEFIN ITDV+G G +N RQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKG+RTLGE
Sbjct: 421 QEEFINGITDVDGVGANNSRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE 480

Query: 481 IAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHLI 509
           IAGNLNISREMVRKHEVKALMKLKH ARVDYLR++++
Sbjct: 481 IAGNLNISREMVRKHEVKALMKLKHQARVDYLRQYIV 517

[Close]

BLAST of Csor.00g305460 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 136.7 bits (343), Expect = 5.1e-32
Identity = 110/391 (28.13%), Postives = 196/391 (50.13%), Query Frame = 0


Query: 125 RQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLR-----KQKDTVS 184
           +Q+  +  +++PS  +    TR+ +R     R A    K     PS++     K+K  V+
Sbjct: 195 KQEEVELLEEQPSVSLAVRSTRQTER---KARRAKGLEKTASGIPSVKTGSSPKKKRLVA 254

Query: 185 EADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 244
           +  + +D +R    +T  + L          L+  E   L   +Q + +L ++Q EL + 
Sbjct: 255 QEVDHNDPLRYLRMTTSSSKL----------LTVREEHELSAGIQDLLKLERLQTELTER 314

Query: 245 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKF 304
            GR+PT  +   A  ++   +R+++  G   ++ +IK N+RLV+ +   Y     +G   
Sbjct: 315 SGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNY---QGAGMNL 374

Query: 305 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSIT-LSSFTRVSFGLDSVRV 364
           QDL Q G +GL+   ++F+  + F+ STYA +WI+ A+ +S++  S   R+ F +     
Sbjct: 375 QDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATY 434

Query: 365 DIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSE-EFIN 424
            ++ A+ +L  E  + P  EEI    G+S +R + V+ + KP  SL  +       +   
Sbjct: 435 RVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSE 494

Query: 425 AITDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLN 484
            I D E    ++      +R  LD VLDSL  +E  VIR R+G++    +TL EI   + 
Sbjct: 495 VIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMG 554

Query: 485 ISREMVRKHEVKALMKLKHPARVDYLRRHLI 509
           +SRE VR+ E  A  KLK+  R ++L+++L+
Sbjct: 555 VSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]

BLAST of Csor.00g305460 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 124.0 bits (310), Expect = 3.4e-28
Identity = 106/367 (28.88%), Postives = 186/367 (50.68%), Query Frame = 0


Query: 136 PSDGIVRNHTRRIKRLDLDKRIALKSN--KEGKATPSLRKQKDTVSEADETDDLVRNYPA 195
           P  G +    R+++R   ++R A KSN   +    P     K    +  + DD ++ +  
Sbjct: 182 PEKGNIVRSKRQLERRAKNRR-APKSNDVDDEGYVPQKTSAKKKYKQGADNDDALQLFLW 241

Query: 196 STDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKELGREPTEGELVDAT 255
             +   L          L++ E   L   +Q + +L +V+ +L+ + G EPT GE  +A 
Sbjct: 242 GPETKQL----------LTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAM 301

Query: 256 NMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLMTA 315
            ++   ++  +  GR++R  LI  NLRLV+ +  +Y      G  FQDL Q G  GLM +
Sbjct: 302 GISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQN---RGLNFQDLLQEGSMGLMKS 361

Query: 316 IDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFT-RVSFGLDSVRVDIQRAKLELSCEHH 375
           +++F+P+   R +TYA +WIR +I +SI  +S T R+   +  +   +  A+     E +
Sbjct: 362 VEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGN 421

Query: 376 RLPTEEEIIAKVGISPERYLEVMRAIKPVYSLH----SRHSTTSEEFINAITDVEGTGGD 435
             P++EE+   VG+S E+  +++   +   S+     S   TT +E I   + +E     
Sbjct: 422 YRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQE-ITPDSGIETPTMS 481

Query: 436 NQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEV 495
             +Q  L+R  + ++L+ L PKE  +I+ R+G+DG   R+L EI     +S+E VR+ E 
Sbjct: 482 VGKQ--LMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLES 531

[Close]

BLAST of Csor.00g305460 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 97.4 bits (241), Expect = 3.4e-20
Identity = 89/299 (29.77%), Postives = 142/299 (47.49%), Query Frame = 0


Query: 210 VLSSSEHTRLFKLVQPMKELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRA 269
           VLS  E  RL K ++    L   +  L+  LG EP++ +L  +  ++  +++  L     
Sbjct: 199 VLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHL 258

Query: 270 ARNNLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYA 329
           AR  L   N+RLV+ +  +Y      G +  DL Q G+ GL+  I++F+  + FR+STY 
Sbjct: 259 AREKLAMSNVRLVMSIAQRYDN---LGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYV 318

Query: 330 LFWIRHAIIRSITLSSFT-RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISP 389
            +WIR  + R++  +S T R+   L      I+ AKL L  E    P+ + I   + +S 
Sbjct: 319 YWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQ-EKGITPSIDRIAESLNMSQ 378

Query: 390 ERYLEVMRAIKPVY--------SLHSRHSTTSEEFINAITDVEGTGGDNQRQPALLRLAL 449
           ++      A+  V+        SL+     T   +I A T +E          AL     
Sbjct: 379 KKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYI-ADTRLENNPWHGYDDLALKEEVS 438

Query: 450 DDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR 500
             +  +L  +E  +IR  YGLD K   T  +I+  + +SRE VR+  + AL KLKH AR
Sbjct: 439 KLISATLGEREKEIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 491

[Close]

BLAST of Csor.00g305460 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 96.3 bits (238), Expect = 7.6e-20
Identity = 91/326 (27.91%), Postives = 152/326 (46.63%), Query Frame = 0


Query: 195 TDMASLDWKKMKIPPVLS------SSEHTRLFKLVQPMKELIQVQEELQKELGREPTEGE 254
           T   ++D  +++ PP         S   T +   V+ + ++ +++ +L++E G+  +   
Sbjct: 251 TTWNNIDVPRVRRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSC 310

Query: 255 LVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVK 314
              A  MN   + R L  G   R+ L+K    LVLF+   Y      G   +DL QAG  
Sbjct: 311 WAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNY---RGLGIAHEDLIQAGYV 370

Query: 315 GLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTR-VSFGLDSVRV--DIQRAKL 374
           G++   +RF+  R ++ STY  +WIR ++  S  +S   R V      +R    IQ+A+ 
Sbjct: 371 GVLQGAERFDHTRGYKFSTYVQYWIRKSM--STMVSRHARGVHIPSSIIRTINHIQKARK 430

Query: 375 ELSCEHH-RLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHS---TTSEEFINAITD 434
            L   H  +   +EEI    G S ++     + +K V S+  +     TT        T 
Sbjct: 431 TLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTT 490

Query: 435 VEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISRE 494
           +E       RQ A  R  + D+L+ L+P+E  V+  RYGL     ++L EI   L +S+E
Sbjct: 491 MESPEEAVMRQSA--RRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKE 550

Query: 495 MVRKHEVKALMKLKHPARVDYLRRHL 508
            +RK E +A+ KL+     + LR +L
Sbjct: 551 WIRKIERRAMAKLRDQPNAEDLRYYL 569

The following BLAST results are available for this feature:

BLAST of Csor.00g305460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZNX9	1.6e-163	60.93	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Arabidopsis tha...	[more]
P26683	2.1e-38	32.95	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	1.2e-33	29.31	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
P74565	7.6e-33	28.93	RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa)...	[more]
O22056	7.2e-31	28.13	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]

BLAST of Csor.00g305460 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6574228.1	0.0	100.00	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial, partial [Cucurbit...	[more]
XP_022945188.1	0.0	99.41	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita mo...	[more]
XP_022968276.1	0.0	98.43	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita ma...	[more]
XP_023543020.1	0.0	98.23	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita pe...	[more]
XP_038903010.1	4.83e-314	89.39	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Benincasa hispida...	[more]

BLAST of Csor.00g305460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G085	0.0	99.41	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like OS=Cucurbita ...	[more]
A0A6J1HXK0	0.0	98.43	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like OS=Cucurbita ...	[more]
A0A6J1E518	1.55e-312	89.41	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2 OS...	[more]
A0A6J1E9R5	2.09e-312	89.41	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X1 OS...	[more]
A0A6J1J8N6	1.80e-311	89.00	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2 OS...	[more]

BLAST of Csor.00g305460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24120.1	1.1e-164	60.93	sigma factor E	[more]
AT1G08540.1	5.1e-32	28.13	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	3.4e-28	28.88	RNApolymerase sigma-subunit F	[more]
AT1G64860.1	3.4e-20	29.77	sigma factor A	[more]
AT3G53920.1	7.6e-20	27.91	RNApolymerase sigma-subunit C	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 447..459 score: 38.21 coord: 301..314 score: 49.63 coord: 325..333 score: 63.94 coord: 468..483 score: 38.47 coord: 483..494 score: 49.09
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 221..264 e-value: 1.5E-5 score: 27.0 coord: 347..399 e-value: 1.7E-7 score: 33.2
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 430..508 e-value: 2.5E-20 score: 73.9
None	No IPR available	GENE3D	1.10.1740.10		coord: 265..342 e-value: 2.2E-22 score: 80.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..186
None	No IPR available	PANTHER	PTHR30603:SF4	RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL	coord: 2..507
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 2..507
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 443..496 e-value: 1.8E-13 score: 49.8
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 274..341 e-value: 2.3E-11 score: 43.3
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 270..496 e-value: 6.7E-24 score: 82.3
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 358..423 e-value: 2.7E-10 score: 40.2 coord: 228..269 e-value: 4.0E-6 score: 26.8
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 356..412
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 433..505
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 193..341

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g305460.m01	Csor.00g305460.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity