Csor.00g305300 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g305300
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionABC transporter G family member 8
LocationCsor_Chr18: 12802448 .. 12802744 (-)
RNA-Seq ExpressionCsor.00g305300
SyntenyCsor.00g305300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGACCAACCGCCGCCGCCGCCGCCGCCGAGAAGTTATACATTAACAACGTCATCAATAACCTACGCAAAATCGACCACCGCCACCACGGCCTCGCCGTACAATTGGTTCAAATCCTGCACGCCGCCGAACCCACCTACATTCTCCGAGACATCTCATTCACAGCGCATCCTTCTCAAATTCTCGCCATTGTCGGCCCAAGCGGCGCCGGAAAATCCACTCTTCTTGATATCCTCGCCGCTCGAACCACCCCGACTCATGGAGCCGTTCTTCTCAACTCCTCCACTCTGA

mRNA sequence

ATGGAAGAAGACCAACCGCCGCCGCCGCCGCCGCCGAGAAGTTATACATTAACAACGTCATCAATAACCTACGCAAAATCGACCACCGCCACCACGGCCTCGCCGTACAATTGGTTCAAATCCTGCACGCCGCCGAACCCACCTACATTCTCCGAGACATCTCATTCACAGCGCATCCTTCTCAAATTCTCGCCATTGTCGGCCCAAGCGGCGCCGGAAAATCCACTCTTCTTGATATCCTCGCCGCTCGAACCACCCCGACTCATGGAGCCGTTCTTCTCAACTCCTCCACTCTGA

Coding sequence (CDS)

ATGGAAGAAGACCAACCGCCGCCGCCGCCGCCGCCGAGAAGTTATACATTAACAACGTCATCAATAACCTACGCAAAATCGACCACCGCCACCACGGCCTCGCCGTACAATTGGTTCAAATCCTGCACGCCGCCGAACCCACCTACATTCTCCGAGACATCTCATTCACAGCGCATCCTTCTCAAATTCTCGCCATTGTCGGCCCAAGCGGCGCCGGAAAATCCACTCTTCTTGATATCCTCGCCGCTCGAACCACCCCGACTCATGGAGCCGTTCTTCTCAACTCCTCCACTCTGA

Protein sequence

MEEDQPPPPPPPRSYTLTTSSITYAKSTTATTASPYNWFKSCTPPNPPTFSETSHSQRILLKFSPLSAQAAPENPLFLISSPLEPPRLMEPFFSTPPL
Homology
BLAST of Csor.00g305300 vs. NCBI nr
Match: KAG6574212.1 (hypothetical protein SDJN03_28099, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194 bits (492), Expect = 3.43e-62
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MEEDQPPPPPPPRSYTLTTSSITYAKSTTATTASPYNWFKSCTPPNPPTFSETSHSQRIL 60
          MEEDQPPPPPPPRSYTLTTSSITYAKSTTATTASPYNWFKSCTPPNPPTFSETSHSQRIL
Sbjct: 1  MEEDQPPPPPPPRSYTLTTSSITYAKSTTATTASPYNWFKSCTPPNPPTFSETSHSQRIL 60

Query: 61 LKFSPLSAQAAPENPLFLISSPLEPPRLMEPFFSTPPL 98
          LKFSPLSAQAAPENPLFLISSPLEPPRLMEPFFSTPPL
Sbjct: 61 LKFSPLSAQAAPENPLFLISSPLEPPRLMEPFFSTPPL 98

BLAST of Csor.00g305300 vs. NCBI nr
Match: XP_023541336.1 (ABC transporter G family member 8-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023541337.1 ABC transporter G family member 8-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.5 bits (197), Expect = 4.17e-15
Identity = 47/72 (65.28%), Postives = 50/72 (69.44%), Query Frame = 0

Query: 1  MEEDQPPPPPPPRSYTLTTSSITYAKSTTATTASPYNWFKSCTPPNPP----TFSETSHS 60
          MEEDQPPPPP  RSYTLTTSSI+YAKSTTATTASPYNW KSCT   P       S T+H 
Sbjct: 1  MEEDQPPPPPLSRSYTLTTSSISYAKSTTATTASPYNWLKSCTAAEPTYILRDISFTAHP 60

Query: 61 QRILLKFSPLSA 68
           +IL    P  A
Sbjct: 61 SQILAIVGPSGA 72

BLAST of Csor.00g305300 vs. NCBI nr
Match: XP_022945799.1 (LOW QUALITY PROTEIN: ABC transporter G family member 4-like [Cucurbita moschata])

HSP 1 Score: 75.1 bits (183), Expect = 3.26e-13
Identity = 46/72 (63.89%), Postives = 47/72 (65.28%), Query Frame = 0

Query: 1  MEEDQPPPPPPPRSYTLTTSSITYAKSTTATTASPYNWFKSCTPPNPP----TFSETSHS 60
          MEEDQPP     RSYTLTTSSITYAKSTTATTASPYNWFKSCT   P       S T H 
Sbjct: 1  MEEDQPPS----RSYTLTTSSITYAKSTTATTASPYNWFKSCTAAEPTYILRDISFTEHP 60

Query: 61 QRILLKFSPLSA 68
           +IL    P  A
Sbjct: 61 SQILATVGPSGA 68

BLAST of Csor.00g305300 vs. NCBI nr
Match: XP_023551807.1 (ABC transporter G family member 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 3.94e-12
Identity = 50/102 (49.02%), Postives = 61/102 (59.80%), Query Frame = 0

Query: 1   MEEDQP-PPPPPPRSYTLTTSSITYAKSTTATTASPYNWFKSCTPPNPP----TFSETSH 60
           MEEDQP PPPPP RSYTLT SSI+YAKST A T S Y+WFKSCT   P       S T+H
Sbjct: 1   MEEDQPRPPPPPSRSYTLTASSISYAKSTAAATVSSYSWFKSCTAAEPTYIIRDISFTAH 60

Query: 61  SQRILLKFSP-----------LSAQAAPENPLFLISS-PLEP 85
             +IL    P           L+A+ +P + + L++S PL P
Sbjct: 61  PSQILAIVGPSGAGKSTLLDILAARTSPTHGVLLLNSAPLNP 102

BLAST of Csor.00g305300 vs. NCBI nr
Match: XP_022141332.1 (ABC transporter G family member 8 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 8.89e-11
Identity = 52/108 (48.15%), Postives = 61/108 (56.48%), Query Frame = 0

Query: 1   MEEDQPPPPPPP----RSYTLTTSSITYAKSTTATTA---SPYNWFKSCTPPNPPTF--- 60
           MEEDQPPP PPP    RSYTLT SSI+YAKSTT  TA   SPY WFKSC    P      
Sbjct: 1   MEEDQPPPQPPPPPPLRSYTLTASSISYAKSTTVITAATLSPYKWFKSCAAAAPTYILRD 60

Query: 61  -SETSHSQRILLKFSP-----------LSAQAAPENP-LFLISSPLEP 85
            S T+H  +IL    P           ++A+ AP +  LFL S+P+ P
Sbjct: 61  VSFTAHPSQILAIVGPSGAGKSTLLDIIAARTAPSHGGLFLNSAPINP 108

BLAST of Csor.00g305300 vs. ExPASy TrEMBL
Match: A0A6J1G1Y8 (LOW QUALITY PROTEIN: ABC transporter G family member 4-like OS=Cucurbita moschata OX=3662 GN=LOC111449939 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.58e-13
Identity = 46/72 (63.89%), Postives = 47/72 (65.28%), Query Frame = 0

Query: 1  MEEDQPPPPPPPRSYTLTTSSITYAKSTTATTASPYNWFKSCTPPNPP----TFSETSHS 60
          MEEDQPP     RSYTLTTSSITYAKSTTATTASPYNWFKSCT   P       S T H 
Sbjct: 1  MEEDQPPS----RSYTLTTSSITYAKSTTATTASPYNWFKSCTAAEPTYILRDISFTEHP 60

Query: 61 QRILLKFSPLSA 68
           +IL    P  A
Sbjct: 61 SQILATVGPSGA 68

BLAST of Csor.00g305300 vs. ExPASy TrEMBL
Match: A0A6J1CJK6 (ABC transporter G family member 8 OS=Momordica charantia OX=3673 GN=LOC111011751 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.30e-11
Identity = 52/108 (48.15%), Postives = 61/108 (56.48%), Query Frame = 0

Query: 1   MEEDQPPPPPPP----RSYTLTTSSITYAKSTTATTA---SPYNWFKSCTPPNPPTF--- 60
           MEEDQPPP PPP    RSYTLT SSI+YAKSTT  TA   SPY WFKSC    P      
Sbjct: 1   MEEDQPPPQPPPPPPLRSYTLTASSISYAKSTTVITAATLSPYKWFKSCAAAAPTYILRD 60

Query: 61  -SETSHSQRILLKFSP-----------LSAQAAPENP-LFLISSPLEP 85
            S T+H  +IL    P           ++A+ AP +  LFL S+P+ P
Sbjct: 61  VSFTAHPSQILAIVGPSGAGKSTLLDIIAARTAPSHGGLFLNSAPINP 108

BLAST of Csor.00g305300 vs. ExPASy TrEMBL
Match: A0A6J1E550 (ABC transporter G family member 8 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430824 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.87e-11
Identity = 49/105 (46.67%), Postives = 60/105 (57.14%), Query Frame = 0

Query: 1   MEEDQP----PPPPPPRSYTLTTSSITYAKSTTATTASPYNWFKSCTPPNPP----TFSE 60
           MEEDQP    PP PP RSYTLT SSI+YAKST A T S Y+WFKSCT   P       S 
Sbjct: 1   MEEDQPRTQPPPSPPSRSYTLTASSISYAKSTAAATVSSYSWFKSCTAAEPTYIIRDISF 60

Query: 61  TSHSQRILLKFSP-----------LSAQAAPENPLFLISS-PLEP 85
           T+H  +IL    P           L+A+ +P + + L++S PL P
Sbjct: 61  TAHPSQILAIVGPSGAGKSTLLDILAARTSPTHGVLLLNSAPLNP 105

BLAST of Csor.00g305300 vs. ExPASy TrEMBL
Match: A0A6J1J853 (ABC transporter G family member 8-like OS=Cucurbita maxima OX=3661 GN=LOC111482617 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.87e-11
Identity = 49/105 (46.67%), Postives = 60/105 (57.14%), Query Frame = 0

Query: 1   MEEDQP----PPPPPPRSYTLTTSSITYAKSTTATTASPYNWFKSCTPPNPP----TFSE 60
           MEEDQP    PP PP RSYTLT SSI+YAKST A T S Y+WFKSCT   P       S 
Sbjct: 1   MEEDQPRPQPPPSPPTRSYTLTASSISYAKSTAAATVSSYSWFKSCTAAEPTYIIRDISF 60

Query: 61  TSHSQRILLKFSP-----------LSAQAAPENPLFLISS-PLEP 85
           T+H  +IL    P           L+A+ +P + + L++S PL P
Sbjct: 61  TAHPSQILAIVGPSGAGKSTLLDILAARTSPTHGVLLLNSAPLNP 105

BLAST of Csor.00g305300 vs. ExPASy TrEMBL
Match: A0A0A0L9Y5 (White-brown-complex ABC transporter family OS=Cucumis sativus OX=3659 GN=Csa_3G184580 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.33e-09
Identity = 53/114 (46.49%), Postives = 61/114 (53.51%), Query Frame = 0

Query: 1   MEEDQP-----------PPPPPPRSYTLTTSSITYAKSTTATTASPYNW-FKSCTPPNPP 60
           ME+DQP           PPP PPRSYTLT SSI+Y KSTT    SPYNW FKSC     P
Sbjct: 1   MEKDQPQPQAEPPPPPPPPPLPPRSYTLTASSISYTKSTTI---SPYNWLFKSCITTTQP 60

Query: 61  TF-----SETSHSQRILLKFSP-----------LSAQAAP-ENPLFLISSPLEP 85
           T+     S T+H  +IL    P           LSA+ +P +  LFL SSPL P
Sbjct: 61  TYILRNISFTAHPSQILAIVGPSGAGKSTLLDILSARTSPTQGSLFLNSSPLNP 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6574212.13.43e-62100.00hypothetical protein SDJN03_28099, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023541336.14.17e-1565.28ABC transporter G family member 8-like isoform X1 [Cucurbita pepo subsp. pepo] >... [more]
XP_022945799.13.26e-1363.89LOW QUALITY PROTEIN: ABC transporter G family member 4-like [Cucurbita moschata][more]
XP_023551807.13.94e-1249.02ABC transporter G family member 8-like [Cucurbita pepo subsp. pepo][more]
XP_022141332.18.89e-1148.15ABC transporter G family member 8 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1G1Y81.58e-1363.89LOW QUALITY PROTEIN: ABC transporter G family member 4-like OS=Cucurbita moschat... [more]
A0A6J1CJK64.30e-1148.15ABC transporter G family member 8 OS=Momordica charantia OX=3673 GN=LOC111011751... [more]
A0A6J1E5505.87e-1146.67ABC transporter G family member 8 isoform X1 OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1J8535.87e-1146.67ABC transporter G family member 8-like OS=Cucurbita maxima OX=3661 GN=LOC1114826... [more]
A0A0A0L9Y51.33e-0946.49White-brown-complex ABC transporter family OS=Cucumis sativus OX=3659 GN=Csa_3G1... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g305300.m01Csor.00g305300.m01mRNA