Csor.00g303350 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g303350
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionChaperonin 60 subunit beta 4
LocationCsor_Chr18: 11744067 .. 11744368 (-)
RNA-Seq ExpressionCsor.00g303350
SyntenyCsor.00g303350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAATTTCACAGAAGACGACACGTTGTACGGTGATTTCCATCGCAGAGCAGTGAGGCGTGTCGTAATTTTGCTGCCTCTGCATCTGTTAATGGCCATGGCCGTTTGCGTTTCGATTTTTACTCTTACACGCAGAATAGCAAGTTGAAGAAGAAGATGCTGATCAGTTTGAGCATTCAAGGCCTATTGGATTTGTTCGTCGCCGGAATTTCTCTCGTCATAGGTTTGGGAATTTTTGCTCTTATTGCTACCATTCTTTGCTCTGCCGCGTTCTTGCACAGTACTAAGGATGTTTCCTAA

mRNA sequence

ATGTACAATTTCACAGAAGACGACACGTTGTACGGTGATTTCCATCGCAGAGCAAATAGCAAGTTGAAGAAGAAGATGCTGATCAGTTTGAGCATTCAAGGCCTATTGGATTTGTTCGTCGCCGGAATTTCTCTCGTCATAGGTTTGGGAATTTTTGCTCTTATTGCTACCATTCTTTGCTCTGCCGCGTTCTTGCACAGTACTAAGGATGTTTCCTAA

Coding sequence (CDS)

ATGTACAATTTCACAGAAGACGACACGTTGTACGGTGATTTCCATCGCAGAGCAAATAGCAAGTTGAAGAAGAAGATGCTGATCAGTTTGAGCATTCAAGGCCTATTGGATTTGTTCGTCGCCGGAATTTCTCTCGTCATAGGTTTGGGAATTTTTGCTCTTATTGCTACCATTCTTTGCTCTGCCGCGTTCTTGCACAGTACTAAGGATGTTTCCTAA

Protein sequence

MYNFTEDDTLYGDFHRRANSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
Homology
BLAST of Csor.00g303350 vs. NCBI nr
Match: KAG6574018.1 (hypothetical protein SDJN03_27905, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137 bits (344), Expect = 2.05e-40
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MYNFTEDDTLYGDFHRRANSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILC 60
          MYNFTEDDTLYGDFHRRANSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILC
Sbjct: 1  MYNFTEDDTLYGDFHRRANSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILC 60

Query: 61 SAAFLHSTKDVS 72
          SAAFLHSTKDVS
Sbjct: 61 SAAFLHSTKDVS 72

BLAST of Csor.00g303350 vs. NCBI nr
Match: XP_022968523.1 (uncharacterized protein LOC111467728 [Cucurbita maxima])

HSP 1 Score: 118 bits (296), Expect = 9.71e-33
Identity = 71/100 (71.00%), Postives = 71/100 (71.00%), Query Frame = 0

Query: 1   MYNFTEDDTLYGDFHRRA----------------------------NSKLKKKMLISLSI 60
           MYNFTE DTLYGDFHRRA                            NSKLKKKMLISLSI
Sbjct: 1   MYNFTEVDTLYGDFHRRAVRRVVILLPLHLVNGHGRLRFDFYSYTQNSKLKKKMLISLSI 60

Query: 61  QGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS 72
           QGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
Sbjct: 61  QGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS 100

BLAST of Csor.00g303350 vs. NCBI nr
Match: KAG7013078.1 (hypothetical protein SDJN02_25834, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.7 bits (239), Expect = 5.70e-24
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 19  NSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS 72
           NSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
Sbjct: 54  NSKLKKKMLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS 107

BLAST of Csor.00g303350 vs. NCBI nr
Match: XP_022945350.1 (uncharacterized protein LOC111449609 [Cucurbita moschata])

HSP 1 Score: 83.6 bits (205), Expect = 1.77e-19
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 26 MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS 72
          MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
Sbjct: 1  MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS 47

BLAST of Csor.00g303350 vs. NCBI nr
Match: XP_023541065.1 (uncharacterized protein LOC111801338 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.2 bits (204), Expect = 2.51e-19
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 26 MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS 72
          MLISLSIQGLLDLFVAG+SLVIGLGIFALIATILCSAAFLHSTKDVS
Sbjct: 1  MLISLSIQGLLDLFVAGVSLVIGLGIFALIATILCSAAFLHSTKDVS 47

BLAST of Csor.00g303350 vs. ExPASy TrEMBL
Match: A0A6J1HY94 (uncharacterized protein LOC111467728 OS=Cucurbita maxima OX=3661 GN=LOC111467728 PE=4 SV=1)

HSP 1 Score: 118 bits (296), Expect = 4.70e-33
Identity = 71/100 (71.00%), Postives = 71/100 (71.00%), Query Frame = 0

Query: 1   MYNFTEDDTLYGDFHRRA----------------------------NSKLKKKMLISLSI 60
           MYNFTE DTLYGDFHRRA                            NSKLKKKMLISLSI
Sbjct: 1   MYNFTEVDTLYGDFHRRAVRRVVILLPLHLVNGHGRLRFDFYSYTQNSKLKKKMLISLSI 60

Query: 61  QGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS 72
           QGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
Sbjct: 61  QGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS 100

BLAST of Csor.00g303350 vs. ExPASy TrEMBL
Match: A0A6J1G0P8 (uncharacterized protein LOC111449609 OS=Cucurbita moschata OX=3662 GN=LOC111449609 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 8.56e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 26 MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS 72
          MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS
Sbjct: 1  MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS 47

BLAST of Csor.00g303350 vs. ExPASy TrEMBL
Match: A0A6J1D4T9 (uncharacterized protein LOC111017596 OS=Momordica charantia OX=3673 GN=LOC111017596 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.86e-13
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 26 MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS 72
          M++  SIQ +LDL VAGISLVIGLGIFALIA+ILCSAAFL S KDVS
Sbjct: 1  MVLGFSIQAVLDLVVAGISLVIGLGIFALIASILCSAAFLQSAKDVS 47

BLAST of Csor.00g303350 vs. ExPASy TrEMBL
Match: A0A1R3HPT2 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_27752 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.53e-11
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 26 MLISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS 72
          +L+ LS+Q L+DL +AG SL+IGLGIFA IA+ILCSAAFLH  KDVS
Sbjct: 3  ILMGLSVQSLVDLVIAGFSLMIGLGIFAFIASILCSAAFLHHAKDVS 49

BLAST of Csor.00g303350 vs. ExPASy TrEMBL
Match: A0A5N5EW15 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_030173 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.57e-11
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 27 LISLSIQGLLDLFVAGISLVIGLGIFALIATILCSAAFLHSTKDVS 72
          ++ LSIQ LLDL VAG+S ++GLGIFA IA+ILCSAAF H+TKDVS
Sbjct: 4  MMRLSIQSLLDLAVAGVSTMVGLGIFAFIASILCSAAFFHTTKDVS 49

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6574018.12.05e-40100.00hypothetical protein SDJN03_27905, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022968523.19.71e-3371.00uncharacterized protein LOC111467728 [Cucurbita maxima][more]
KAG7013078.15.70e-24100.00hypothetical protein SDJN02_25834, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022945350.11.77e-19100.00uncharacterized protein LOC111449609 [Cucurbita moschata][more]
XP_023541065.12.51e-1997.87uncharacterized protein LOC111801338 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A6J1HY944.70e-3371.00uncharacterized protein LOC111467728 OS=Cucurbita maxima OX=3661 GN=LOC111467728... [more]
A0A6J1G0P88.56e-20100.00uncharacterized protein LOC111449609 OS=Cucurbita moschata OX=3662 GN=LOC1114496... [more]
A0A6J1D4T98.86e-1378.72uncharacterized protein LOC111017596 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A1R3HPT21.53e-1170.21Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_27752 PE=4 SV=1[more]
A0A5N5EW151.57e-1171.74Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g303350.m01Csor.00g303350.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane