Csor.00g302920 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g302920
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr18: 11451537 .. 11451896 (+)
RNA-Seq ExpressionCsor.00g302920
SyntenyCsor.00g302920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAAAAGGATCAAGATCAATGTTCCCAAGGGCAAACATGCCCAATTTTGGCGAGACCAGTGGAAAGATGAAGTGGTTCTATCCTCCCATTTCCCTAAACTCTACCCTCTCTTGGGAAAGCAACTGGCTTTTAATAATCAATCCCGGATTCCCTCTTCTTGTTGGGACCTTATTGTCGGAAGGAATCCTAATGATGGAGGCTTAATGACTTCTCCTTGGGCACTAGAAGTGACTTCTGGGATATGGGGCAAGGACAAATCGATCTCTCCAAACACTCTGTATGGTGATCTCATAAAGGCTCTTCCTTCATTCCCTCTCTGGATAGCTTTACTTGCAATTGCCTCAGAACGCCCCTAA

mRNA sequence

ATGGTCAAAAGGATCAAGATCAATGTTCCCAAGGGCAAACATGCCCAATTTTGGCGAGACCAGTGGAAAGATGAAGTGGTTCTATCCTCCCATTTCCCTAAACTCTACCCTCTCTTGGGAAAGCAACTGGCTTTTAATAATCAATCCCGGATTCCCTCTTCTTGTTGGGACCTTATTGTCGGAAGGAATCCTAATGATGGAGGCTTAATGACTTCTCCTTGGGCACTAGAAGTGACTTCTGGGATATGGGGCAAGGACAAATCGATCTCTCCAAACACTCTGTATGGTGATCTCATAAAGGCTCTTCCTTCATTCCCTCTCTGGATAGCTTTACTTGCAATTGCCTCAGAACGCCCCTAA

Coding sequence (CDS)

ATGGTCAAAAGGATCAAGATCAATGTTCCCAAGGGCAAACATGCCCAATTTTGGCGAGACCAGTGGAAAGATGAAGTGGTTCTATCCTCCCATTTCCCTAAACTCTACCCTCTCTTGGGAAAGCAACTGGCTTTTAATAATCAATCCCGGATTCCCTCTTCTTGTTGGGACCTTATTGTCGGAAGGAATCCTAATGATGGAGGCTTAATGACTTCTCCTTGGGCACTAGAAGTGACTTCTGGGATATGGGGCAAGGACAAATCGATCTCTCCAAACACTCTGTATGGTGATCTCATAAAGGCTCTTCCTTCATTCCCTCTCTGGATAGCTTTACTTGCAATTGCCTCAGAACGCCCCTAA

Protein sequence

MVKRIKINVPKGKHAQFWRDQWKDEVVLSSHFPKLYPLLGKQLAFNNQSRIPSSCWDLIVGRNPNDGGLMTSPWALEVTSGIWGKDKSISPNTLYGDLIKALPSFPLWIALLAIASERP
Homology
BLAST of Csor.00g302920 vs. NCBI nr
Match: KAG6573975.1 (hypothetical protein SDJN03_27862, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 252 bits (644), Expect = 1.04e-84
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0

Query: 1   MVKRIKINVPKGKHAQFWRDQWKDEVVLSSHFPKLYPLLGKQLAFNNQSRIPSSCWDLIV 60
           MVKRIKINVPKGKHAQFWRDQWKDEVVLSSHFPKLYPLLGKQLAFNNQSRIPSSCWDLIV
Sbjct: 1   MVKRIKINVPKGKHAQFWRDQWKDEVVLSSHFPKLYPLLGKQLAFNNQSRIPSSCWDLIV 60

Query: 61  GRNPNDGGLMTSPWALEVTSGIWGKDKSISPNTLYGDLIKALPSFPLWIALLAIASERP 119
           GRNPNDGGLMTSPWALEVTSGIWGKDKSISPNTLYGDLIKALPSFPLWIALLAIASERP
Sbjct: 61  GRNPNDGGLMTSPWALEVTSGIWGKDKSISPNTLYGDLIKALPSFPLWIALLAIASERP 119

BLAST of Csor.00g302920 vs. NCBI nr
Match: RVX01787.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 49.7 bits (117), Expect = 5.20e-04
Identity = 31/81 (38.27%), Postives = 41/81 (50.62%), Query Frame = 0

Query: 5   IKINVPKGKHAQFWRDQWKDEVVLSSHFPKLYPLLGKQLAFNNQSRIPSSC---WDLIVG 64
           IK  V KG   +FW DQW D VVLS  FP+L+ +   + A  N+    SS    W+L   
Sbjct: 249 IKFKVGKGTRVKFWTDQWCDNVVLSHSFPQLFEMAVNRNATVNEMWDLSSGQGGWNLRFH 308

Query: 65  RNPNDGGLMTSPWALEVTSGI 82
           RN ND       W L++  G+
Sbjct: 309 RNFND-------WELDLIRGL 322

BLAST of Csor.00g302920 vs. ExPASy TrEMBL
Match: A0A438IYM2 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_963 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.52e-04
Identity = 31/81 (38.27%), Postives = 41/81 (50.62%), Query Frame = 0

Query: 5   IKINVPKGKHAQFWRDQWKDEVVLSSHFPKLYPLLGKQLAFNNQSRIPSSC---WDLIVG 64
           IK  V KG   +FW DQW D VVLS  FP+L+ +   + A  N+    SS    W+L   
Sbjct: 249 IKFKVGKGTRVKFWTDQWCDNVVLSHSFPQLFEMAVNRNATVNEMWDLSSGQGGWNLRFH 308

Query: 65  RNPNDGGLMTSPWALEVTSGI 82
           RN ND       W L++  G+
Sbjct: 309 RNFND-------WELDLIRGL 322

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6573975.11.04e-84100.00hypothetical protein SDJN03_27862, partial [Cucurbita argyrosperma subsp. sorori... [more]
RVX01787.15.20e-0438.27putative ribonuclease H protein [Vitis vinifera][more]
Match NameE-valueIdentityDescription
A0A438IYM22.52e-0438.27Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_963 P... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g302920.m01Csor.00g302920.m01mRNA