Csor.00g302660 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g302660
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr18: 11333018 .. 11333524 (+)
RNA-Seq Expression	Csor.00g302660
Synteny	Csor.00g302660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAATTCAGCCCTCCGATCAATCGAATCCTCTTCATCGCTCAATTCACTCCAATCCAACGCCTCAGAACCCCGCCCCTCAATGGCCGGAAAACCCACCTCTCCATCATTTTCACCTCCAAAACTGCCAATGCATCTAGGAAAACAGCACCGAATAGACACCACCACGGCGGAGGCGACGGCGGCGGCCTCTGTAACAACGAAACAGAGGAGTGGTGGAGGGCGAGAATTGGAACTGGAGAAGCTCAAATTTCTCGGCCGGCGACGATTTCTTGAGGAAAAGGAGCTTTGGGAAGATGGGTTTTTTCACTTTAGCAAGAAAGATGGAAACTTTGAAGAAATTAAAGAGCTTTTGGGAAATGGGTTGCCTTTTGGGCTGCATTTTTCTTGTTTCAATAGCAATGGGTTGATAGCCATGGGGGTTTTAAAGAGCGGTGGAAGAACAGAGGAATGTGAGCCAAGCTGGAAAAGATGGCGGTGGTCGGTCGGAGTTTGGAGCTATTAA

mRNA sequence

ATGAACAATTCAGCCCTCCGATCAATCGAATCCTCTTCATCGCTCAATTCACTCCAATCCAACGCCTCAGAACCCCGCCCCTCAATGGCCGGAAAACCCACCTCTCCATCATTTTCACCTCCAAAACTGCCAATGCATCTAGGAAAACAGCACCGAATAGACACCACCACGGCGGAGGCGACGGCGGCGGCCTCTGTAACAACGAAACAGAGGAGTGGTGGAGGGCGAGAATTGGAACTGGAGAAGCTCAAATTTCTCGGCCGGCGACGATTTCTTGAGGAAAAGGAGCTTTGGGAAGATGGGTTTTTTCACTTTAGCAAGAAAGATGGAAACTTTGAAGAAATTAAAGAGCTTTTGGGAAATGGGTTGCCTTTTGGGCTGCATTTTTCTTGTTTCAATAGCAATGGGTTGATAGCCATGGGGGTTTTAAAGAGCGGTGGAAGAACAGAGGAATGTGAGCCAAGCTGGAAAAGATGGCGGTGGTCGGTCGGAGTTTGGAGCTATTAA

Coding sequence (CDS)

ATGAACAATTCAGCCCTCCGATCAATCGAATCCTCTTCATCGCTCAATTCACTCCAATCCAACGCCTCAGAACCCCGCCCCTCAATGGCCGGAAAACCCACCTCTCCATCATTTTCACCTCCAAAACTGCCAATGCATCTAGGAAAACAGCACCGAATAGACACCACCACGGCGGAGGCGACGGCGGCGGCCTCTGTAACAACGAAACAGAGGAGTGGTGGAGGGCGAGAATTGGAACTGGAGAAGCTCAAATTTCTCGGCCGGCGACGATTTCTTGAGGAAAAGGAGCTTTGGGAAGATGGGTTTTTTCACTTTAGCAAGAAAGATGGAAACTTTGAAGAAATTAAAGAGCTTTTGGGAAATGGGTTGCCTTTTGGGCTGCATTTTTCTTGTTTCAATAGCAATGGGTTGATAGCCATGGGGGTTTTAAAGAGCGGTGGAAGAACAGAGGAATGTGAGCCAAGCTGGAAAAGATGGCGGTGGTCGGTCGGAGTTTGGAGCTATTAA

Protein sequence

MNNSALRSIESSSSLNSLQSNASEPRPSMAGKPTSPSFSPPKLPMHLGKQHRIDTTTAEATAAASVTTKQRSGGGRELELEKLKFLGRRRFLEEKELWEDGFFHFSKKDGNFEEIKELLGNGLPFGLHFSCFNSNGLIAMGVLKSGGRTEECEPSWKRWRWSVGVWSY

Homology

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BLAST of Csor.00g302660 vs. NCBI nr
Match: KAG6573949.1 (hypothetical protein SDJN03_27836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 336 bits (861), Expect = 3.30e-116
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MNNSALRSIESSSSLNSLQSNASEPRPSMAGKPTSPSFSPPKLPMHLGKQHRIDTTTAEA 60
           MNNSALRSIESSSSLNSLQSNASEPRPSMAGKPTSPSFSPPKLPMHLGKQHRIDTTTAEA
Sbjct: 1   MNNSALRSIESSSSLNSLQSNASEPRPSMAGKPTSPSFSPPKLPMHLGKQHRIDTTTAEA 60

Query: 61  TAAASVTTKQRSGGGRELELEKLKFLGRRRFLEEKELWEDGFFHFSKKDGNFEEIKELLG 120
           TAAASVTTKQRSGGGRELELEKLKFLGRRRFLEEKELWEDGFFHFSKKDGNFEEIKELLG
Sbjct: 61  TAAASVTTKQRSGGGRELELEKLKFLGRRRFLEEKELWEDGFFHFSKKDGNFEEIKELLG 120

Query: 121 NGLPFGLHFSCFNSNGLIAMGVLKSGGRTEECEPSWKRWRWSVGVWSY 168
           NGLPFGLHFSCFNSNGLIAMGVLKSGGRTEECEPSWKRWRWSVGVWSY
Sbjct: 121 NGLPFGLHFSCFNSNGLIAMGVLKSGGRTEECEPSWKRWRWSVGVWSY 168

The following BLAST results are available for this feature:

BLAST of Csor.00g302660 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g302660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573949.1	3.30e-116	100.00	hypothetical protein SDJN03_27836, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g302660 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g302660 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g302660.m01	Csor.00g302660.m01	mRNA