Csor.00g302060 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g302060
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionglycine-rich RNA-binding protein GRP1A-like
LocationCsor_Chr18: 10989910 .. 10990260 (+)
RNA-Seq ExpressionCsor.00g302060
SyntenyCsor.00g302060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGCAGAGTCCAATTGCCACCAGAAAACTAACACAGAAAAACATGGCGAAGATGGGGCTACTAACCAGATTGGCAGAAGAAACAGTGCATGTGCGATCACCGTTTCTCAGGCGGTTGCTCATGGAGGTGGTGCCAGGGGAGGTGGTGCCAGCAGAGGGGGTGGTGCCAGGGGAGGTGGTGGTGTTAGTAGTCCTCATACAGGAGGTAGTGCCGTAATCCCCATTTACGTAGCTGGTTCAGCGCAAGCACAACGTCGCCGAGGTCGACCAGTCAATGCAGGAAATCGCCATGAGAACAACATGTGGCTTCTGGTAGCTGCAGCTTTGGCTGCCATTGCACATCTGTAA

mRNA sequence

ATGCATGCAGAGTCCAATTGCCACCAGAAAACTAACACAGAAAAACATGGCGAAGATGGGGCTACTAACCAGATTGGCAGAAGAAACAGTGCATGTGCGATCACCGTTTCTCAGGCGGTTGCTCATGGAGGTGGTGCCAGGGGAGGTGGTGCCAGCAGAGGGGGTGGTGCCAGGGGAGGTGGTGGTGTTAGTAGTCCTCATACAGGAGGTAGTGCCGTAATCCCCATTTACGTAGCTGGTTCAGCGCAAGCACAACGTCGCCGAGGTCGACCAGTCAATGCAGGAAATCGCCATGAGAACAACATGTGGCTTCTGGTAGCTGCAGCTTTGGCTGCCATTGCACATCTGTAA

Coding sequence (CDS)

ATGCATGCAGAGTCCAATTGCCACCAGAAAACTAACACAGAAAAACATGGCGAAGATGGGGCTACTAACCAGATTGGCAGAAGAAACAGTGCATGTGCGATCACCGTTTCTCAGGCGGTTGCTCATGGAGGTGGTGCCAGGGGAGGTGGTGCCAGCAGAGGGGGTGGTGCCAGGGGAGGTGGTGGTGTTAGTAGTCCTCATACAGGAGGTAGTGCCGTAATCCCCATTTACGTAGCTGGTTCAGCGCAAGCACAACGTCGCCGAGGTCGACCAGTCAATGCAGGAAATCGCCATGAGAACAACATGTGGCTTCTGGTAGCTGCAGCTTTGGCTGCCATTGCACATCTGTAA

Protein sequence

MHAESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGASRGGGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMWLLVAAALAAIAHL
Homology
BLAST of Csor.00g302060 vs. NCBI nr
Match: KAG6573889.1 (hypothetical protein SDJN03_27776, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219 bits (557), Expect = 1.56e-71
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MHAESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGASRGGGARGG 60
           MHAESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGASRGGGARGG
Sbjct: 1   MHAESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGASRGGGARGG 60

Query: 61  GGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMWLLVAAALAAIAHL 116
           GGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMWLLVAAALAAIAHL
Sbjct: 61  GGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMWLLVAAALAAIAHL 116

BLAST of Csor.00g302060 vs. NCBI nr
Match: KAG7012953.1 (hypothetical protein SDJN02_25707, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199 bits (507), Expect = 1.07e-63
Identity = 110/117 (94.02%), Postives = 110/117 (94.02%), Query Frame = 0

Query: 4   ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGASRGG----GARG 63
           ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGA  GG    GARG
Sbjct: 15  ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGARGGGASRGGARG 74

Query: 64  GGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMWLLVAAALAAIAHL 116
           GGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAG RHENNMWLLVAAALAAIAHL
Sbjct: 75  GGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLLVAAALAAIAHL 131

BLAST of Csor.00g302060 vs. NCBI nr
Match: XP_022945097.1 (uncharacterized protein LOC111449437 isoform X1 [Cucurbita moschata])

HSP 1 Score: 191 bits (485), Expect = 2.93e-60
Identity = 106/113 (93.81%), Postives = 106/113 (93.81%), Query Frame = 0

Query: 4   ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGASRGGGARGGGGV 63
           ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGA     SRGG ARGGGGV
Sbjct: 31  ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGA-----SRGG-ARGGGGV 90

Query: 64  SSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMWLLVAAALAAIAHL 116
           SSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAG RHENNMWLLVAAALAAIAHL
Sbjct: 91  SSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLLVAAALAAIAHL 137

BLAST of Csor.00g302060 vs. NCBI nr
Match: XP_022945098.1 (uncharacterized protein LOC111449437 isoform X2 [Cucurbita moschata])

HSP 1 Score: 187 bits (475), Expect = 8.33e-59
Identity = 101/113 (89.38%), Postives = 101/113 (89.38%), Query Frame = 0

Query: 4   ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGASRGGGARGGGGV 63
           ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGG           GV
Sbjct: 31  ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGG-----------GV 90

Query: 64  SSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMWLLVAAALAAIAHL 116
           SSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAG RHENNMWLLVAAALAAIAHL
Sbjct: 91  SSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLLVAAALAAIAHL 132

BLAST of Csor.00g302060 vs. NCBI nr
Match: XP_022968347.1 (uncharacterized protein LOC111467612 isoform X2 [Cucurbita maxima])

HSP 1 Score: 182 bits (462), Expect = 9.36e-57
Identity = 102/114 (89.47%), Postives = 103/114 (90.35%), Query Frame = 0

Query: 4   ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGASRGGGARGGGGV 63
           ESNCHQKTNTEKHGEDGATNQIGRRN ACAITVSQAVAHGGGA  GGASRGGG      V
Sbjct: 30  ESNCHQKTNTEKHGEDGATNQIGRRNRACAITVSQAVAHGGGASRGGASRGGG------V 89

Query: 64  SSPHTGG-SAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMWLLVAAALAAIAHL 116
           SSPHTGG SAVIPIYVAGSAQAQRRRGRPVNAGNRHEN+MWLLVAAALAA AHL
Sbjct: 90  SSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENDMWLLVAAALAATAHL 137

BLAST of Csor.00g302060 vs. ExPASy TrEMBL
Match: A0A6J1G000 (uncharacterized protein LOC111449437 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449437 PE=4 SV=1)

HSP 1 Score: 191 bits (485), Expect = 1.42e-60
Identity = 106/113 (93.81%), Postives = 106/113 (93.81%), Query Frame = 0

Query: 4   ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGASRGGGARGGGGV 63
           ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGA     SRGG ARGGGGV
Sbjct: 31  ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGA-----SRGG-ARGGGGV 90

Query: 64  SSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMWLLVAAALAAIAHL 116
           SSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAG RHENNMWLLVAAALAAIAHL
Sbjct: 91  SSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLLVAAALAAIAHL 137

BLAST of Csor.00g302060 vs. ExPASy TrEMBL
Match: A0A6J1FZV5 (uncharacterized protein LOC111449437 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449437 PE=4 SV=1)

HSP 1 Score: 187 bits (475), Expect = 4.03e-59
Identity = 101/113 (89.38%), Postives = 101/113 (89.38%), Query Frame = 0

Query: 4   ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGASRGGGARGGGGV 63
           ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGG           GV
Sbjct: 31  ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGG-----------GV 90

Query: 64  SSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMWLLVAAALAAIAHL 116
           SSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAG RHENNMWLLVAAALAAIAHL
Sbjct: 91  SSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLLVAAALAAIAHL 132

BLAST of Csor.00g302060 vs. ExPASy TrEMBL
Match: A0A6J1HTB9 (uncharacterized protein LOC111467612 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467612 PE=4 SV=1)

HSP 1 Score: 182 bits (462), Expect = 4.53e-57
Identity = 102/114 (89.47%), Postives = 103/114 (90.35%), Query Frame = 0

Query: 4   ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGASRGGGARGGGGV 63
           ESNCHQKTNTEKHGEDGATNQIGRRN ACAITVSQAVAHGGGA  GGASRGGG      V
Sbjct: 30  ESNCHQKTNTEKHGEDGATNQIGRRNRACAITVSQAVAHGGGASRGGASRGGG------V 89

Query: 64  SSPHTGG-SAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMWLLVAAALAAIAHL 116
           SSPHTGG SAVIPIYVAGSAQAQRRRGRPVNAGNRHEN+MWLLVAAALAA AHL
Sbjct: 90  SSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENDMWLLVAAALAATAHL 137

BLAST of Csor.00g302060 vs. ExPASy TrEMBL
Match: A0A6J1HUL7 (uncharacterized protein LOC111467612 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467612 PE=4 SV=1)

HSP 1 Score: 182 bits (462), Expect = 6.45e-57
Identity = 106/119 (89.08%), Postives = 107/119 (89.92%), Query Frame = 0

Query: 4   ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGA-RGGGASR----GGGAR 63
           ESNCHQKTNTEKHGEDGATNQIGRRN ACAITVSQAVAHGGGA RGGG S     GGGA 
Sbjct: 30  ESNCHQKTNTEKHGEDGATNQIGRRNRACAITVSQAVAHGGGASRGGGVSSPHTVGGGAS 89

Query: 64  GGGGVSSPHTGG-SAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMWLLVAAALAAIAHL 116
            GGGVSSPHTGG SAVIPIYVAGSAQAQRRRGRPVNAGNRHEN+MWLLVAAALAA AHL
Sbjct: 90  RGGGVSSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENDMWLLVAAALAATAHL 148

BLAST of Csor.00g302060 vs. ExPASy TrEMBL
Match: A0A6J1JB47 (uncharacterized protein LOC111485159 OS=Cucurbita maxima OX=3661 GN=LOC111485159 PE=4 SV=1)

HSP 1 Score: 117 bits (293), Expect = 2.66e-31
Identity = 69/113 (61.06%), Postives = 79/113 (69.91%), Query Frame = 0

Query: 4   ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGASRGGGARGGGGV 63
           E N HQKTN EKHG+DG TN+I    SA AITVSQ + HG       ++ GGG  GGGG 
Sbjct: 33  EPNYHQKTNAEKHGQDGVTNRISSIYSARAITVSQGIGHG-------SAAGGGENGGGGR 92

Query: 64  SSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMWLLVAAALAAIAHL 116
                GG+AVIP+Y AGSAQA  R+GRP NAGN +ENNM LLVA+ LAAIAHL
Sbjct: 93  PQAGGGGAAVIPVYAAGSAQAHHRQGRPRNAGNHYENNMGLLVASVLAAIAHL 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6573889.11.56e-71100.00hypothetical protein SDJN03_27776, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7012953.11.07e-6394.02hypothetical protein SDJN02_25707, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022945097.12.93e-6093.81uncharacterized protein LOC111449437 isoform X1 [Cucurbita moschata][more]
XP_022945098.18.33e-5989.38uncharacterized protein LOC111449437 isoform X2 [Cucurbita moschata][more]
XP_022968347.19.36e-5789.47uncharacterized protein LOC111467612 isoform X2 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A6J1G0001.42e-6093.81uncharacterized protein LOC111449437 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1FZV54.03e-5989.38uncharacterized protein LOC111449437 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1HTB94.53e-5789.47uncharacterized protein LOC111467612 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HUL76.45e-5789.08uncharacterized protein LOC111467612 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JB472.66e-3161.06uncharacterized protein LOC111485159 OS=Cucurbita maxima OX=3661 GN=LOC111485159... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g302060.m01Csor.00g302060.m01mRNA