Csor.00g301960 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g301960
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	60S acidic ribosomal protein P2-like
Location	Csor_Chr18: 10928875 .. 10930051 (-)
RNA-Seq Expression	Csor.00g301960
Synteny	Csor.00g301960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATCGTAGCTGCATATTTGCTCGCCGTCTTGGGAGGCAACTCCAGCCCTTCTGCTAAAGATTTGAAGAATATTCTTGGATCTGGTAAACATCTGCATCTCGTTCTCATTTTTATCCTTATATTTCTTAAATGTAATCGTTTTTGTTGATTATCCTGGAATTTTTTGTGTTGATGTTTAGTTTTACGTGTTTTTTTTTTTGAATTTTTGAATGAAAAATTTACGTGTTTGTTTGGTTAATATGTTTTTTTCGTTTCATAGAATCTTTTTGTTATTTACTTGCGATTTGATTCGATCTGTTGTGACTCTGCACGATTTCAAGCTTTGGAGTTTCGTTTTTTGGATGGTTTGCGGTACCGATTGCTGATTATTTCTCTCATTCTGTGAAATGATTTACGGAATTTGATTCTGTCTCGCTATGATTTTTCTACCTATATTGATTCTGTTATTTTGGCTTGGTTAGCATTTTAGTTTATGAGGTTACTTCCGTTCGTTAACGCAGTTTTTGATAATTAATTTCTGTTTGAGAAACATTAAGAATAATGTGTTTGTAATTTGTGGCTGGATATGAATAAGTTTTTCATGTATGAAATTTGCAATCGATGGTTCAAGAGACTGAAGCGGCAGCACGATTGTTTTTTAATAATTATACTTTATGACTGTTTTTTGGTTGTAGCATGATATCCTTAGTGTTGTTATTTGTAATACTCATTTTCGTCGCCTTTTGATTGAATTACGTGAAAGCCAAGTATTTTGATTGATGTCATATATATTTTTTTTTTCCGAAACCAATTTGCAGTTGGAGCTGAAGTTGATGATGAAAAAATCGAGCTTCTGTTGTCTAGCGTTAAGGGCAAGGATGTTACAGAGCTCATTGCTTCCGGAAGAGAAAAACTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCCATGGCAGTTGCCGCTGGAGGCGGTGGGGGTGGTGGTGGTGCCGCCCCAGCTGCAGAAGAGTCGAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGATGATGTAAGCTTCGTTAAACTCTATGAAAACTCTATGAATTGCCATAAGATTCTTGATCATAAACTCAGTTTTATTCGTTTAATCTGTTCTAATTTCTTGTTTGATCGATGTTTTGCAGGACATGGGCTTCAGTCTCTTCGATTAA

mRNA sequence

ATGAAGATCGTAGCTGCATATTTGCTCGCCGTCTTGGGAGGCAACTCCAGCCCTTCTGCTAAAGATTTGAAGAATATTCTTGGATCTGTTGGAGCTGAAGTTGATGATGAAAAAATCGAGCTTCTGTTGTCTAGCGTTAAGGGCAAGGATGTTACAGAGCTCATTGCTTCCGGAAGAGAAAAACTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCCATGGCAGTTGCCGCTGGAGGCGGTGGGGGTGGTGGTGGTGCCGCCCCAGCTGCAGAAGAGTCGAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGATGATGACATGGGCTTCAGTCTCTTCGATTAA

Coding sequence (CDS)

ATGAAGATCGTAGCTGCATATTTGCTCGCCGTCTTGGGAGGCAACTCCAGCCCTTCTGCTAAAGATTTGAAGAATATTCTTGGATCTGTTGGAGCTGAAGTTGATGATGAAAAAATCGAGCTTCTGTTGTCTAGCGTTAAGGGCAAGGATGTTACAGAGCTCATTGCTTCCGGAAGAGAAAAACTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCCATGGCAGTTGCCGCTGGAGGCGGTGGGGGTGGTGGTGGTGCCGCCCCAGCTGCAGAAGAGTCGAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGATGATGACATGGGCTTCAGTCTCTTCGATTAA

Protein sequence

MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGREKLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD

Homology

[Close]

BLAST of Csor.00g301960 vs. ExPASy Swiss-Prot
Match: Q9SLF7 (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-34
Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVL G +SP++ D+K ILGSVGAE +D +IELLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG  +AVA+   GGGGG   +A ESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Csor.00g301960 vs. ExPASy Swiss-Prot
Match: P51407 (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 SV=2)

HSP 1 Score: 145.6 bits (366), Expect = 3.5e-34
Identity = 87/116 (75.00%), Postives = 99/116 (85.34%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAA+LLAVL G +SP+  D+K+ILGSVGAE +D +IELLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVA-AGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG  +AVA A  GGGGGG APAA ESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPAA-ESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Csor.00g301960 vs. ExPASy Swiss-Prot
Match: P41099 (60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-33
Identity = 85/115 (73.91%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK++AA+LLA+LGGN+SP+ +DLK+IL SVGA+ DD+KIELLLS VKGKD+TELIASGRE
Sbjct: 1   MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           +LASVPSGGG A+A AAGGGGG   AA AAEE KKEEK E  EESD+++GFSLFD
Sbjct: 61  RLASVPSGGGVAVAAAAGGGGGDAPAA-AAEEPKKEEKSE--EESDEELGFSLFD 112

[Close]

BLAST of Csor.00g301960 vs. ExPASy Swiss-Prot
Match: O24415 (60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.3e-32
Identity = 81/115 (70.43%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK++AAYLLAVLGGN+SP+A D+K+IL SVGAE D+EK+E LL+ +K KD+TE+IA+GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           +L+SVPSGGG A+ + A     GGGAAP AEE+KKEEKVEEKEESD+DMGFSLFD
Sbjct: 61  RLSSVPSGGG-AIDMGAPAAVAGGGAAP-AEEAKKEEKVEEKEESDEDMGFSLFD 113

[Close]

BLAST of Csor.00g301960 vs. ExPASy Swiss-Prot
Match: P46252 (60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3)

HSP 1 Score: 137.5 bits (345), Expect = 9.5e-32
Identity = 85/115 (73.91%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK VAAYLLAVL GN+SPSA DL  IL SVG EVD+EK+ELLLS + GKD+TELIA+GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           K ASVP GGG     AA      GGAAPAA E+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KFASVPCGGGGVAVAAA--APAAGGAAPAA-EAKKEEKVEEKEESDDDMGFSLFD 112

[Close]

BLAST of Csor.00g301960 vs. NCBI nr
Match: XP_022945075.1 (60S acidic ribosomal protein P2-2-like [Cucurbita moschata] >KAG6573879.1 60S acidic ribosomal protein P2-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204 bits (520), Expect = 6.37e-66
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Csor.00g301960 vs. NCBI nr
Match: XP_023541212.1 (60S acidic ribosomal protein P2-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203 bits (517), Expect = 1.83e-65
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDE+IELLLSSVKGKDVTELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Csor.00g301960 vs. NCBI nr
Match: XP_022968573.1 (60S acidic ribosomal protein P2-2-like [Cucurbita maxima])

HSP 1 Score: 203 bits (516), Expect = 2.59e-65
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAMAVAAGGGGGGGGA PAAEESKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAMAVAAGGGGGGGGATPAAEESKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Csor.00g301960 vs. NCBI nr
Match: XP_042514341.1 (60S acidic ribosomal protein P2-like [Macadamia integrifolia])

HSP 1 Score: 184 bits (467), Expect = 7.69e-58
Identity = 100/115 (86.96%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK++AAYLLAVLGGN+SPSA DLKNILGSVGA+ +D+KIELLLS VKGKD+TELIASGRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPSANDLKNILGSVGADAEDDKIELLLSEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAA+AVAA  GGGGGGAAPAA+E KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAIAVAASAGGGGGGAAPAADEPKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Csor.00g301960 vs. NCBI nr
Match: XP_038891319.1 (60S acidic ribosomal protein P2-2-like [Benincasa hispida])

HSP 1 Score: 183 bits (465), Expect = 1.55e-57
Identity = 103/115 (89.57%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MKIVAAYLLAVLGGNSSPSAKDLK+ILGSVGAE+D+E+IELLLS+VKGKDVTELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEERIELLLSNVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGA +A AA GGGGGG  APAA ESKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVVAAAAVGGGGGGADAPAAAESKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Csor.00g301960 vs. ExPASy TrEMBL
Match: A0A6J1FZV9 (60S acidic ribosomal protein P2-2-like OS=Cucurbita moschata OX=3662 GN=LOC111449424 PE=3 SV=1)

HSP 1 Score: 204 bits (520), Expect = 3.08e-66
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Csor.00g301960 vs. ExPASy TrEMBL
Match: A0A6J1HYE9 (60S acidic ribosomal protein P2-2-like OS=Cucurbita maxima OX=3661 GN=LOC111467757 PE=3 SV=1)

HSP 1 Score: 203 bits (516), Expect = 1.26e-65
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAMAVAAGGGGGGGGA PAAEESKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAMAVAAGGGGGGGGATPAAEESKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Csor.00g301960 vs. ExPASy TrEMBL
Match: A0A6J1J1Z8 (60S acidic ribosomal protein P2-4-like OS=Cucurbita maxima OX=3661 GN=LOC111482688 PE=3 SV=1)

HSP 1 Score: 183 bits (464), Expect = 1.03e-57
Identity = 104/115 (90.43%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MKIVAAYLLAVLGGN+SPSAKDLK+ILGSVGAEVD++KIELL+SSVKGKD+TELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAA+AVAA GGGGG  AAPAA ESKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAASGGGGGA-AAPAAAESKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of Csor.00g301960 vs. ExPASy TrEMBL
Match: A0A6J1GZ75 (60S acidic ribosomal protein P2-1-like OS=Cucurbita moschata OX=3662 GN=LOC111458566 PE=3 SV=1)

HSP 1 Score: 183 bits (464), Expect = 1.03e-57
Identity = 104/115 (90.43%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MKIVAAYLLAVLGGN+SPSAKDLK+ILGSVGAEVD++KIELL+SSVKGKD+TELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAA+AVAA GGGGG  AAPAA ESKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAAGGGGGA-AAPAAAESKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of Csor.00g301960 vs. ExPASy TrEMBL
Match: A0A2N9HS84 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42780 PE=3 SV=1)

HSP 1 Score: 182 bits (463), Expect = 1.52e-57
Identity = 100/115 (86.96%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK++AAYLLAVLGG ++PSA+DLK+ILGSVGAE DD+KIELLLS VKGKD+TELIASGRE
Sbjct: 1   MKVIAAYLLAVLGGKTTPSAEDLKDILGSVGAEADDDKIELLLSEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG A+AVAA GGGGGGGAAPAA ESKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGGAVAVAATGGGGGGGAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Csor.00g301960 vs. TAIR 10
Match: AT2G27710.1 (60S acidic ribosomal protein family )

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-35
Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVL G +SP++ D+K ILGSVGAE +D +IELLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG  +AVA+   GGGGG   +A ESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Csor.00g301960 vs. TAIR 10
Match: AT2G27710.2 (60S acidic ribosomal protein family )

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-35
Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVL G +SP++ D+K ILGSVGAE +D +IELLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG  +AVA+   GGGGG   +A ESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Csor.00g301960 vs. TAIR 10
Match: AT2G27710.3 (60S acidic ribosomal protein family )

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-35
Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAAYLLAVL G +SP++ D+K ILGSVGAE +D +IELLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG  +AVA+   GGGGG   +A ESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Csor.00g301960 vs. TAIR 10
Match: AT2G27720.1 (60S acidic ribosomal protein family )

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-35
Identity = 87/116 (75.00%), Postives = 99/116 (85.34%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60
           MK+VAA+LLAVL G +SP+  D+K+ILGSVGAE +D +IELLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAMAVA-AGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG  +AVA A  GGGGGG APAA ESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPAA-ESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Csor.00g301960 vs. TAIR 10
Match: AT2G27720.3 (60S acidic ribosomal protein family )

HSP 1 Score: 136.7 bits (343), Expect = 1.2e-32
Identity = 87/128 (67.97%), Postives = 99/128 (77.34%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGS------------VGAEVDDEKIELLLSSVKG 60
           MK+VAA+LLAVL G +SP+  D+K+ILGS            VGAE +D +IELLL  VKG
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIVGAETEDSQIELLLKEVKG 60

Query: 61  KDVTELIASGREKLASVPSGGGAAMAVA-AGGGGGGGGAAPAAEESKKEEKVEEKEESDD 116
           KD+ ELIA+GREKLASVPSGGG  +AVA A  GGGGGG APAA ESKKEEK EEKEESDD
Sbjct: 61  KDLAELIAAGREKLASVPSGGGGGVAVASATSGGGGGGGAPAA-ESKKEEKKEEKEESDD 120

The following BLAST results are available for this feature:

BLAST of Csor.00g301960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SLF7	1.6e-34	72.17	60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 ...	[more]
P51407	3.5e-34	75.00	60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 ...	[more]
P41099	1.3e-33	73.91	60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1	[more]
O24415	4.3e-32	70.43	60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1	[more]
P46252	9.5e-32	73.91	60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3	[more]

BLAST of Csor.00g301960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945075.1	6.37e-66	100.00	60S acidic ribosomal protein P2-2-like [Cucurbita moschata] >KAG6573879.1 60S ac...	[more]
XP_023541212.1	1.83e-65	99.13	60S acidic ribosomal protein P2-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022968573.1	2.59e-65	99.13	60S acidic ribosomal protein P2-2-like [Cucurbita maxima]	[more]
XP_042514341.1	7.69e-58	86.96	60S acidic ribosomal protein P2-like [Macadamia integrifolia]	[more]
XP_038891319.1	1.55e-57	89.57	60S acidic ribosomal protein P2-2-like [Benincasa hispida]	[more]

BLAST of Csor.00g301960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FZV9	3.08e-66	100.00	60S acidic ribosomal protein P2-2-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1HYE9	1.26e-65	99.13	60S acidic ribosomal protein P2-2-like OS=Cucurbita maxima OX=3661 GN=LOC1114677...	[more]
A0A6J1J1Z8	1.03e-57	90.43	60S acidic ribosomal protein P2-4-like OS=Cucurbita maxima OX=3661 GN=LOC1114826...	[more]
A0A6J1GZ75	1.03e-57	90.43	60S acidic ribosomal protein P2-1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A2N9HS84	1.52e-57	86.96	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42780 PE=3 SV=1	[more]

BLAST of Csor.00g301960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27710.1	1.1e-35	72.17	60S acidic ribosomal protein family	[more]
AT2G27710.2	1.1e-35	72.17	60S acidic ribosomal protein family	[more]
AT2G27710.3	1.1e-35	72.17	60S acidic ribosomal protein family	[more]
AT2G27720.1	2.5e-35	75.00	60S acidic ribosomal protein family	[more]
AT2G27720.3	1.2e-32	67.97	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..59 e-value: 2.8E-27 score: 96.6
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 17..114 e-value: 2.5E-24 score: 85.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..115
None	No IPR available	PANTHER	PTHR21141:SF83	60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE	coord: 2..115
IPR044076	Ribosomal protein P2	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 2..115
IPR044076	Ribosomal protein P2	CDD	cd05833	Ribosomal_P2	coord: 1..115 e-value: 3.11069E-33 score: 110.046
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 2..115 score: 17.301743

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g301960.m01	Csor.00g301960.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002182	cytoplasmic translational elongation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome