Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCACCAGGGCGATTGGTTTGTTGTTGTTGTTGTTGTTGTTGGTTTTGTTAATGGTGGACTTAACTTTTGCTGCTAGATTCTTGAAGGGCTATGGAGGAAATGGCGGCGGAGGCGGAGAAGGATCGGGACCTTTGTCAGGTTCGGGATATGGTTCGGGTAATGGCACTGGATATGGCGATGAAGGCTATGGGCAGTATGGGAGTGGCGGTGCAAATGGAACCGGTGTTGGCCGCGGGTTTGGGTCGGGAAGTGGGTTCGGGTATGGGTCTGTTGGTGCAGCAGGCCCTGGTGAAGGAGGTGGCGAAGGCGGTGGTGGAGGTGGAGGTGGAGGCTCAGGCTTCGGAAGTGGGTGGGGATATGGCTCCGGATATGGAAGTGGGGGTGGCTATGGAAGCGGAGGAGGCGGTGGAGGTGGCGGCGGTGGCGGTGGCGGTGGCGGAGGAGGCGGTGGTGGCAGTGCAGGAGGAATGACGGGAGGATCCGGAAATGATTCTGGATCATGGGTCGGGTTATGGGTCTGGATTGGAGGAGGGGATGAAAAATCGCCATGA
mRNA sequence
ATGGCCACCACCAGGGCGATTGGTTTGTTGTTGTTGTTGTTGTTGTTGGTTTTGTTAATGGTGGACTTAACTTTTGCTGCTAGATTCTTGAAGGGCTATGGAGGAAATGGCGGCGGAGGCGGAGAAGGATCGGGACCTTTGTCAGGTTCGGGATATGGTTCGGGTAATGGCACTGGATATGGCGATGAAGGCTATGGGCAGTATGGGAGTGGCGGTGCAAATGGAACCGGTGTTGGCCGCGGGTTTGGGTCGGGAAGTGGGTTCGGGTATGGGTCTGTTGGTGCAGCAGGCCCTGGTGAAGGAGGTGGCGAAGGCGGTGGTGGAGGTGGAGGTGGAGGCTCAGGCTTCGGAAGTGGGTGGGGATATGGCTCCGGATATGGAAGTGGGGGTGGCTATGGAAGCGGAGGAGGCGGTGGAGGTGGCGGCGGTGGCGGTGGCGGTGGCGGAGGAGGCGGTGGTGGCAGTGCAGGAGGAATGACGGGAGGATCCGGAAATGATTCTGGATCATGGGTCGGGTTATGGGTCTGGATTGGAGGAGGGGATGAAAAATCGCCATGA
Coding sequence (CDS)
ATGGCCACCACCAGGGCGATTGGTTTGTTGTTGTTGTTGTTGTTGTTGGTTTTGTTAATGGTGGACTTAACTTTTGCTGCTAGATTCTTGAAGGGCTATGGAGGAAATGGCGGCGGAGGCGGAGAAGGATCGGGACCTTTGTCAGGTTCGGGATATGGTTCGGGTAATGGCACTGGATATGGCGATGAAGGCTATGGGCAGTATGGGAGTGGCGGTGCAAATGGAACCGGTGTTGGCCGCGGGTTTGGGTCGGGAAGTGGGTTCGGGTATGGGTCTGTTGGTGCAGCAGGCCCTGGTGAAGGAGGTGGCGAAGGCGGTGGTGGAGGTGGAGGTGGAGGCTCAGGCTTCGGAAGTGGGTGGGGATATGGCTCCGGATATGGAAGTGGGGGTGGCTATGGAAGCGGAGGAGGCGGTGGAGGTGGCGGCGGTGGCGGTGGCGGTGGCGGAGGAGGCGGTGGTGGCAGTGCAGGAGGAATGACGGGAGGATCCGGAAATGATTCTGGATCATGGGTCGGGTTATGGGTCTGGATTGGAGGAGGGGATGAAAAATCGCCATGA
Protein sequence
MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGYGDEGYGQYGSGGANGTGVGRGFGSGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGWGYGSGYGSGGGYGSGGGGGGGGGGGGGGGGGGGGSAGGMTGGSGNDSGSWVGLWVWIGGGDEKSP
Homology
BLAST of Csor.00g301750 vs. NCBI nr
Match:
KAG6573859.1 (hypothetical protein SDJN03_27746, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 260 bits (665), Expect = 8.70e-86
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0
Query: 1 MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGY 60
MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGY
Sbjct: 1 MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGY 60
Query: 61 GDEGYGQYGSGGANGTGVGRGFGSGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGW 120
GDEGYGQYGSGGANGTGVGRGFGSGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGW
Sbjct: 61 GDEGYGQYGSGGANGTGVGRGFGSGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGW 120
Query: 121 GYGSGYGSGGGYGSGGGGGGGGGGGGGGGGGGGGSAGGMTGGSGNDSGSWVGLWVWIGGG 180
GYGSGYGSGGGYGSGGGGGGGGGGGGGGGGGGGGSAGGMTGGSGNDSGSWVGLWVWIGGG
Sbjct: 121 GYGSGYGSGGGYGSGGGGGGGGGGGGGGGGGGGGSAGGMTGGSGNDSGSWVGLWVWIGGG 180
Query: 181 DEKSP 185
DEKSP
Sbjct: 181 DEKSP 185
BLAST of Csor.00g301750 vs. NCBI nr
Match:
XP_022945760.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata])
HSP 1 Score: 234 bits (598), Expect = 1.16e-75
Identity = 174/177 (98.31%), Postives = 174/177 (98.31%), Query Frame = 0
Query: 1 MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGY 60
MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGY
Sbjct: 1 MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGY 60
Query: 61 GDEGYGQYGSGGANGTGVGRGFGSGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGW 120
GDEGYGQYGSGGANGTGVGRGFGSGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGW
Sbjct: 61 GDEGYGQYGSGGANGTGVGRGFGSGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGW 120
Query: 121 GYGSGYGSGGGYGSGGGGGGGGGGGGGGGGGGGGSAGGMTGGSGNDSGSWVGLWVWI 177
GYGSGYGSGGGYGSGG GGGGGGGGGGG GGGGGSAGGMTGGSGN SGSWVGLWVWI
Sbjct: 121 GYGSGYGSGGGYGSGGSGGGGGGGGGGG-GGGGGSAGGMTGGSGNGSGSWVGLWVWI 176
BLAST of Csor.00g301750 vs. NCBI nr
Match:
XP_023542045.1 (glycine-rich cell wall structural protein 2-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 228 bits (582), Expect = 2.66e-73
Identity = 167/177 (94.35%), Postives = 168/177 (94.92%), Query Frame = 0
Query: 1 MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGY 60
MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGY
Sbjct: 1 MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGY 60
Query: 61 GDEGYGQYGSGGANGTGVGRGFGSGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGW 120
GDEGYGQ+GSGGANGTGVGRGFGSGSG GYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGW
Sbjct: 61 GDEGYGQHGSGGANGTGVGRGFGSGSGSGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGW 120
Query: 121 GYGSGYGSGGGYGSGGGGGGGGGGGGGGGGGGGGSAGGMTGGSGNDSGSWVGLWVWI 177
GYGSGYGSGGGYGSGGGGGGGGG GGGGGSAGGM GGSG DSGSWVGLWVWI
Sbjct: 121 GYGSGYGSGGGYGSGGGGGGGGG------GGGGGSAGGMAGGSGKDSGSWVGLWVWI 171
BLAST of Csor.00g301750 vs. NCBI nr
Match:
XP_022967988.1 (glycine-rich cell wall structural protein 2-like [Cucurbita maxima])
HSP 1 Score: 219 bits (557), Expect = 1.74e-69
Identity = 167/177 (94.35%), Postives = 167/177 (94.35%), Query Frame = 0
Query: 1 MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGY 60
MATTRAIGLLLLLL VLLMVDLTFAARFLKGYGGNGGGG EGSGPLSGSGYGSGNGTGY
Sbjct: 1 MATTRAIGLLLLLL--VLLMVDLTFAARFLKGYGGNGGGGEEGSGPLSGSGYGSGNGTGY 60
Query: 61 GDEGYGQYGSGGANGTGVGRGFGSGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGW 120
GDEGYGQYGSGGANGTGVGRGFGSGSG GYGSVGAAGP EGGGEGGG GGGGGSGFGSGW
Sbjct: 61 GDEGYGQYGSGGANGTGVGRGFGSGSGSGYGSVGAAGPSEGGGEGGGRGGGGGSGFGSGW 120
Query: 121 GYGSGYGSGGGYGSGGGGGGGGGGGGGGGGGGGGSAGGMTGGSGNDSGSWVGLWVWI 177
GYGSGYGSGGGYGSGGGGGGGGGGGG GGGGGSAGGM GGSGNDSGSWVGLWVWI
Sbjct: 121 GYGSGYGSGGGYGSGGGGGGGGGGGG---GGGGGSAGGMAGGSGNDSGSWVGLWVWI 172
BLAST of Csor.00g301750 vs. NCBI nr
Match:
XP_022990525.1 (putative glycine-rich cell wall structural protein 1 [Cucurbita maxima])
HSP 1 Score: 106 bits (265), Expect = 5.77e-25
Identity = 133/203 (65.52%), Postives = 137/203 (67.49%), Query Frame = 0
Query: 1 MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGG-------GEGSGPLSGSGYG 60
MAT AIGL+LL VLLM DLT AARFL+GYGG GGGG GEGS P SGSGYG
Sbjct: 1 MATNGAIGLVLL----VLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYG 60
Query: 61 SGNGTGYG------------DEGYGQYGSGG--------------ANGTGVGRGFGSGSG 120
SG G+GYG DEGYG YGSGG ANG G G+GFGSGSG
Sbjct: 61 SGYGSGYGSGYGDGGYPRYGDEGYGPYGSGGGGGGGGGGGGGGGSANGAGYGQGFGSGSG 120
Query: 121 FGYGSVGAAGPGEGGGEGGG--GGGGGGSGFGSGWGYGSGYGSGGGYGSGGGGGGGGGGG 168
GYGS G G G GGG GGG GGGGGGSG GSG GYGSGYGSGGGYGSGGG GGGGGGG
Sbjct: 121 SGYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGG 180
BLAST of Csor.00g301750 vs. ExPASy TrEMBL
Match:
A0A6J1G1W4 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111449905 PE=4 SV=1)
HSP 1 Score: 234 bits (598), Expect = 5.59e-76
Identity = 174/177 (98.31%), Postives = 174/177 (98.31%), Query Frame = 0
Query: 1 MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGY 60
MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGY
Sbjct: 1 MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGY 60
Query: 61 GDEGYGQYGSGGANGTGVGRGFGSGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGW 120
GDEGYGQYGSGGANGTGVGRGFGSGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGW
Sbjct: 61 GDEGYGQYGSGGANGTGVGRGFGSGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGW 120
Query: 121 GYGSGYGSGGGYGSGGGGGGGGGGGGGGGGGGGGSAGGMTGGSGNDSGSWVGLWVWI 177
GYGSGYGSGGGYGSGG GGGGGGGGGGG GGGGGSAGGMTGGSGN SGSWVGLWVWI
Sbjct: 121 GYGSGYGSGGGYGSGGSGGGGGGGGGGG-GGGGGSAGGMTGGSGNGSGSWVGLWVWI 176
BLAST of Csor.00g301750 vs. ExPASy TrEMBL
Match:
A0A6J1HWR8 (glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111467358 PE=4 SV=1)
HSP 1 Score: 219 bits (557), Expect = 8.43e-70
Identity = 167/177 (94.35%), Postives = 167/177 (94.35%), Query Frame = 0
Query: 1 MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGGGEGSGPLSGSGYGSGNGTGY 60
MATTRAIGLLLLLL VLLMVDLTFAARFLKGYGGNGGGG EGSGPLSGSGYGSGNGTGY
Sbjct: 1 MATTRAIGLLLLLL--VLLMVDLTFAARFLKGYGGNGGGGEEGSGPLSGSGYGSGNGTGY 60
Query: 61 GDEGYGQYGSGGANGTGVGRGFGSGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGW 120
GDEGYGQYGSGGANGTGVGRGFGSGSG GYGSVGAAGP EGGGEGGG GGGGGSGFGSGW
Sbjct: 61 GDEGYGQYGSGGANGTGVGRGFGSGSGSGYGSVGAAGPSEGGGEGGGRGGGGGSGFGSGW 120
Query: 121 GYGSGYGSGGGYGSGGGGGGGGGGGGGGGGGGGGSAGGMTGGSGNDSGSWVGLWVWI 177
GYGSGYGSGGGYGSGGGGGGGGGGGG GGGGGSAGGM GGSGNDSGSWVGLWVWI
Sbjct: 121 GYGSGYGSGGGYGSGGGGGGGGGGGG---GGGGGSAGGMAGGSGNDSGSWVGLWVWI 172
BLAST of Csor.00g301750 vs. ExPASy TrEMBL
Match:
A0A6J1JQB8 (putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111487374 PE=4 SV=1)
HSP 1 Score: 106 bits (265), Expect = 2.79e-25
Identity = 133/203 (65.52%), Postives = 137/203 (67.49%), Query Frame = 0
Query: 1 MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGG-------GEGSGPLSGSGYG 60
MAT AIGL+LL VLLM DLT AARFL+GYGG GGGG GEGS P SGSGYG
Sbjct: 1 MATNGAIGLVLL----VLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYG 60
Query: 61 SGNGTGYG------------DEGYGQYGSGG--------------ANGTGVGRGFGSGSG 120
SG G+GYG DEGYG YGSGG ANG G G+GFGSGSG
Sbjct: 61 SGYGSGYGSGYGDGGYPRYGDEGYGPYGSGGGGGGGGGGGGGGGSANGAGYGQGFGSGSG 120
Query: 121 FGYGSVGAAGPGEGGGEGGG--GGGGGGSGFGSGWGYGSGYGSGGGYGSGGGGGGGGGGG 168
GYGS G G G GGG GGG GGGGGGSG GSG GYGSGYGSGGGYGSGGG GGGGGGG
Sbjct: 121 SGYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGG 180
BLAST of Csor.00g301750 vs. ExPASy TrEMBL
Match:
A0A0A0KUV7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622440 PE=4 SV=1)
HSP 1 Score: 100 bits (248), Expect = 7.96e-23
Identity = 124/218 (56.88%), Postives = 135/218 (61.93%), Query Frame = 0
Query: 1 MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGN---GGGGGEGSGPLSGSGYGSGNG 60
MATT+A GL++L VLLM+DL AARF +GYGG GGGGGEGSGP SGSGYGSG G
Sbjct: 1 MATTKAAGLVIL----VLLMLDLALAARFFRGYGGGSGGGGGGGEGSGPWSGSGYGSGYG 60
Query: 61 TGYG-----DEGYGQYG-----------SGGANGTG--------------VGRGFGSGSG 120
+GYG +EGY +YG SGG G G GRGFG+GSG
Sbjct: 61 SGYGSGYGGEEGYSRYGDEGRYGPYGPYSGGGGGGGGGGGGGGGSAIGAEYGRGFGAGSG 120
Query: 121 FGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGWGYGSGYGSGGGYGSGGGGGGGGGGGGG 180
GYGS G G G GGG G GGGGGGGSG GSG GYGSGYGSGGGYGSGGG GG
Sbjct: 121 SGYGSGGGVGRGGGGGGGSGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGG------- 180
Query: 181 GGGGGGGSAGGMTGGSGNDSGSWVGLWVWIGGGDEKSP 185
GGGG GG GGSG SG G + GGGDE+SP
Sbjct: 181 ---GGGGGGGGGGGGSGYGSGYGSG---YGGGGDEESP 201
BLAST of Csor.00g301750 vs. ExPASy TrEMBL
Match:
A0A1S3BGF1 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC103489565 PE=4 SV=1)
HSP 1 Score: 95.9 bits (237), Expect = 4.57e-21
Identity = 133/222 (59.91%), Postives = 142/222 (63.96%), Query Frame = 0
Query: 1 MATTRAIGLLLLLLLLVLLMVDLTFAARFLKGYGGNGGGG-------GEGSG-PLSGSGY 60
MATT+A+G ++L VLLM+DL AARF +GYGG GGGG GEGSG P GSGY
Sbjct: 1 MATTKAVGFVVL----VLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGSGGPWPGSGY 60
Query: 61 GSGNGTGYG-------------DEGYGQYG--SGGANGTG--------------VGRGFG 120
GSG G+GYG DEGYG YG SGG G G GRGFG
Sbjct: 61 GSGYGSGYGSGYGGEEGYSRYGDEGYGPYGRYSGGGGGGGGGGGGGGGSAIGAEYGRGFG 120
Query: 121 SGSGFGYGSVGAAGPGEGGGEGGGGGGGGGSGFGSGWGYGSGYGSGGGYGSGGGGGGGGG 180
G G GYGS G G G GGG G GGGGGGGSG GSG GYGSGYGSGGGYGSGGG GGGGG
Sbjct: 121 MGGGSGYGSGGGVGRGGGGGGGSGGGGGGGSGVGSGSGYGSGYGSGGGYGSGGGRGGGGG 180
Query: 181 GGGGGGGGGGGSAGGMTGGSGNDSGSWVGLWVWIGGGDEKSP 185
GGGGGGGGGG GGM GGSG SG G + GGGDE+SP
Sbjct: 181 VGGGGGGGGGGG-GGMGGGSGYGSGYGSG---YGGGGDEESP 214
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6573859.1 | 8.70e-86 | 100.00 | hypothetical protein SDJN03_27746, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022945760.1 | 1.16e-75 | 98.31 | glycine-rich cell wall structural protein 2-like [Cucurbita moschata] | [more] |
XP_023542045.1 | 2.66e-73 | 94.35 | glycine-rich cell wall structural protein 2-like [Cucurbita pepo subsp. pepo] | [more] |
XP_022967988.1 | 1.74e-69 | 94.35 | glycine-rich cell wall structural protein 2-like [Cucurbita maxima] | [more] |
XP_022990525.1 | 5.77e-25 | 65.52 | putative glycine-rich cell wall structural protein 1 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1G1W4 | 5.59e-76 | 98.31 | glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... | [more] |
A0A6J1HWR8 | 8.43e-70 | 94.35 | glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=... | [more] |
A0A6J1JQB8 | 2.79e-25 | 65.52 | putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661... | [more] |
A0A0A0KUV7 | 7.96e-23 | 56.88 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622440 PE=4 SV=1 | [more] |
A0A1S3BGF1 | 4.57e-21 | 59.91 | glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1... | [more] |
Match Name | E-value | Identity | Description | |