Csor.00g301660 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g301660
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	glycine-rich RNA-binding protein RZ1C-like
Location	Csor_Chr18: 10686200 .. 10691202 (+)
RNA-Seq Expression	Csor.00g301660
Synteny	Csor.00g301660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTCGACTTCCGATGCATATATACTCATTTTTTCATCGGCGACGCGCCGTCGAGCTGATTTTATTAATTTTTTATTTATTTATAGAAATATAATTTATTTTCAGCTTTTTAAAACCCCTTTTTCCAATTTTTTTTCTATTTTTTTATTTTGAAAACAATTTCCCAATTATAATAAAAGAAATTCAATTATTGGATCAAAGTCTTTAATCTAAATAAAATAAATAAATATTTTAATCATATTAGTAATTAAAAGTAATTAGAAATATTTTATTTTTATTTATAAATTTAGATAAATTTTTTTTAAAGTAACTAAGAATATTTTAATAATATAAAGTTAAAAAATTAATCCTTTCCCTAAATAAATGTAATAATAATAATTCTATTTATAATTATTTATTTCAATCCTCTACTTGGAATCAAACAAATAAAATTTAAATAAAAATAAATAAATATCGTGTCTATTTACGTATTTATTTTGTAGGGTTCTTCAGGAATCTCTAGAAGGAAACGAGGGTTCATTCTTTGAGGATATTTCACACTACACAGCACGAACAAGGTATTCCCATTCTCTATCTTCGTTACTTTCTTCTAAATCATAGAATCAATTGTTATTTTCGGTGGGAAGCACTTGATGAATGTTGTTTCTCATTGATTTCCGTTCAACTTTGTTCTTGGATTACCCTAATTACTCTGGATTTTGTTTGCAGGAGGAGTTTTCTGAAATACGGTGTTGATATGGCTGGGAGAGATGAGTACCGAATATTTGTGGGTGGGTTATCGTGGGAAATCACGGAGCGTCAGCTTGAGAATGCCTTCAGTCGATTCGGAAAGATTATCGATTCTCAGGTTACCCTTTGTGATTTACTTTTTGATTTTTGGTTTGATCTGTGTGGCTGGAAATCGAAGAAACTGAGCACGTTGGAATGAGTAATTAATCTGTTTCTGATATGAGAAGGAAATTGAGGAGATTTTGGATTAATTCGGATTCATTTCAGTGTTATTGATCTTATGGAAAATATAATTTCTGAATTTCCACTCCCTTCCCTCTAAATAACCTTGCCCTGTAAGTTTAACTATTACTTTCAGCTTTTTTTTTTAACCTTTAATTTGTCTCCGTCCTCTTCTCTTTCTGATGAATGTTTTTTTCCCCTTGTGAATGAGGATGCTGTTAATGAAATTTTTGGGAAGCGGTTTAACTGTTCATGAGAAGTTGAATGCATCAAGATGCTGAAGGTCATAGGGTTGTACGTTGGTTAAGCATTATCTGTTTAAGATCTGCTGGTTAAGAAAAAGTATCATCAGTCTGGAAATTTGGAATATGGTTGGCGGCAAACTCAATCTTGTTCTCTAGCTGATTGGGGTTTGGTGGGATTTTAGTTTGCGAACTCAGTGACTAACTTGTTCTGTGGGATAAAAGTACTCGTCATTCTTTTGCGACAGATAAATGATTTAATACCAGAGTAACTATTAACAAGTCATGTGCTGATACCTGCTCGAGCATACCTTCCTGTCTTATTGTTATTTGATGCTTTTGAAGAAGAAACTGAAGTCACTAAAATGTTGTGTATTCGAGAAATAAAATGTTCTAGTATTTGCTTGGAGAATTTTATCTTTCTCTGGATGATTATTAAACCCTCCATCTTATCCTTGGCTTACCCTACTTTCCAATGGTATGACTAAAATTTAATGATGAAGTTATGTGGTTACATGAGATGATGTACCTGGGGCAGAAGTTCTGGGCTAGACTACCATATTGACTCAGATAATTGGTTTGCTAAGTCATCTAATCACAGAAAATTTCTGTAGACATTTGTCATTGGATGCAAAATTTTGTTATCCAAAGATTGTTTCATACTACTGGCTGCTTCATTGTAATGTTCTCTTTGTTTCCCTATCCTTTACTGTAATCATTAGCAGAGTGAGAGATAGCTGGTTTTTCATTTGCTAGTTTCACTGGTGTTGAGAGTTGTCAGTGTTCTAAGATGAAGAATACGTTGAATTGGTGCCTCCTTTTTGGCTAAGATTTATGATACCGTACAAGGTGCAGTGTTTGGAGATCAATAGCCATTTTATCCTTTTGAGTAGGCACTGCTTCTTTGAATTCATTTTGCTGAGGTAAATCAGAGTTCCCTACTTGTCCAGGCATAATCAGAAAGTTGTTCGTATTGGTTTTTGTTCAGCAGTTGATGTGGCTAGAAATTGTACTAGCAATTCCAGGCTTAGCTACTCAGACATTTTCCGAAGAATTGGCCAAAATGCATTTGTAGTCTTTAGTTTGACATATTTCCTTGTTGTACAAAGATAGCTGAATTGTAAATGTCAGTTTGAGTGCCTTCTCTGATCGGTTGTTGTCATCTCTGGTGAAAATGTTAAGATACTATACAGTGGACATGGAGAATGGACGTTGACGTGGTTATTATTGCCATTTGTACCTTCCAGATCTCTAAAGGCCTCTGATGCTGGATTTCTTTCTGTTTGACCAAGCATTATGGATATCTATTTGTTGGGTATAGACTGCAGCAAAGCAATTGGATCTGAAGCTAAATTTGAGTGTCTTTAGGTGCAGTGTTGCAGGTTGGGTTTTTTATGAGTTATTTAGAGGAATGGATTTAGGTTGTGGCAACCTGAGAAATTATGGAGCTTTAGTTTTCCATCCATTGGTTTTCAACCTTTTCCCGTTGTTTGAAGTTGTTCCTTGAGATCGGTCCAGAATTCTGCTATTTTGTTTTCCTTTTTTGTGGTGTGCTAGTTCCCTCGTTTTATACTCGTTGACAGTATTTTGTGTTATCAGAGTTTGAATTCCTCGATTATTGATTCTATTTAAACTTAAGAGGGGTTGAATATGTACCTAGTTAAGTACGGTTGCCATGCAAGCTGTTGTCTGTAATCAAGTTTTCTAGTACATCCTCTTGTCCACAAACTGCTGACGGGATCTCAATTACAGAATGTGCTGGCATCTCCAACTTGCCTATGTCTCCTAGAGTATTCATCTTGGAAGATGTGTTGCTTAAGGATTCATCTTTCAGATTTATTCCACCATCTATTTCAGATCTCATCCCAATATGGTATTGATAGCAAGATGGCTATAAAATTCTTGTGTTTCCCTTGTGTGTTATTTGTTGAGGTTAACAAATCCCGGAATAATACACATATCCAGTGAAGTGTTTGTACTGGGTTTTTTTTGAGTCAACATTGGATTTGAGTGCCATTTTGGATGCCTGACTGCACAGAACCCATGTAGCAATTTTTTTTGTGGAGTTGTTTCTTTTGAATAAAAGGGGACTAGAGGTCTAAGATACTCCCACTTCAGAAGATAGAGATAAAGACATGCAGGTTCTTTTGTTTTGTTAAGGAATTATGTAACATGTTGCAATGAGTTCTTCATAAATGGAAGAAACAAGTAAGTTTGTCAGACTGTTTAAAATATTTTATGCTGTTATTATCAATTACTATAAGTTTAAACTTCGAACGATTTCTCTTTTAGATGTTGTACTTATCGTGCATACAGCATGTGATAGGCCGAATGTCATCACCAGCTTGTACCTGTAACTTATCTGTTACCATATTTGCTGAATGATAGTTTAATGGAGTTTTATCCTCTAATTTGTTGATCATGGCAACTGTTTGGTATTGATTTTATACCTCTTAGATTCACCTCGTTTTCAACGACTCCAACCTTCAGAGTGTTGTCACATGGTATCTTAAATACCAAAACAAAATCACCTTATATTGGTGGTTAGGGCATAGATTTCATCATGAAACATGTCATCTTTGAATATTGAGTGGATGGAATCCTGGGCTATTTATTTATCTTTCATTGTGATGGTCTTCTTCGTCACTTGATTAATGCCAGGTTTTGTTATGTTAGACAAATTTTCTTCATAATCTAGTTTCGAGCTATGCTGATGGCTTGTAGGTTTGAAGTTGTCACTTGCATTATTAGCATGAGATGTACTTTACTAGCTCTGATTTAAGTTCTATGGTCTGTTTTATTGACTGGCGTAAACTTCCTCTTTGGCGTTCCTGTAGATCATGTTGGAAAAAAATACAGGGCGCCCACGTGGCTTTGGGTTTATCACGTTTTCAGATCGACGGGGAATGGATGATGCTATCAGAGAGATGCATGGACAGGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATGGACCACGGTTACAGGGGGGGAGGCTACTCAAGTGGTGGCAGGGATAGCAGCTATGGTGGTGGAGGAGGAGGAGATAGATCTGCTAGGCAAGATGAATGCTTCAAATGTGGACGTCCTGGACACTGGGCCAGAGATTGTCCTGTGGGCGGTGGTCGAGGAAGGGGAGGAGACTCATTTCTTTCACGTCCTCGACTTGGGGATAGCGATTATGGGGATCGCTTTGCTGGAGATAATAATCGTTATGTGGATGATCGTTATGAAGGTGGTGGACGCCTTGGAGATAGAGATCGTTTTGATAGCAGCAGGGACAAATATGGGAGTCGCGATCGCTATGTTAGTGACAGGTAATGACTGATATTTCTATGGATTTGAATTTTATTTTCTGTGTATAAAATATGTTTGTTATTTTTCTAGTCTTAAAATTTATCCTTTTAAAGTAATTATCACTAGAATACGATAAATTAACAGAAGAGTGATCCAATATCCTTTGTTTTGCTGAGTAATCACATGACTTCTCAATTAATTCCTTGCAGCATTATACTTGATCAATCCTCTCATCCCTATAGGTACCCACCTAGCGGAGACCGCTTTGGAAGCAGTAGGTACAACAACGACTCTGGTCGATTTCCCGTAAACAGCTTTGGTAAAGATAGGGGCTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTACGAAAGCAGCGGTCCAGCACGCAACGAGGGAAGAAGCTACAGGAACAGACCAGCTCCTTACGATCGCCCTAGCAGAGCAGCAGGGAGGCCATCATCATTTGATCGTTATTGA

mRNA sequence

ATGGCGGTCGACTTCCGATGCATATATACTCATTTTTTCATCGGCGACGCGCCGGTTCTTCAGGAATCTCTAGAAGGAAACGAGGGTTCATTCTTTGAGGATATTTCACACTACACAGCACGAACAAGGAGGAGTTTTCTGAAATACGGTGTTGATATGGCTGGGAGAGATGAGTACCGAATATTTGTGGGTGGGTTATCGTGGGAAATCACGGAGCGTCAGCTTGAGAATGCCTTCAGTCGATTCGGAAAGATTATCGATTCTCAGAAACAAATCATGTTGGAAAAAAATACAGGGCGCCCACGTGGCTTTGGGTTTATCACGTTTTCAGATCGACGGGGAATGGATGATGCTATCAGAGAGATGCATGGACAGGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATGGACCACGGTTACAGGGGGGGAGGCTACTCAAGTGGTGGCAGGGATAGCAGCTATGGTGGTGGAGGAGGAGGAGATAGATCTGCTAGGCAAGATGAATGCTTCAAATGTGGACGTCCTGGACACTGGGCCAGAGATTGTCCTGTGGGCGGTGGTCGAGGAAGGGGAGGAGACTCATTTCTTTCACGTCCTCGACTTGGGGATAGCGATTATGGGGATCGCTTTGCTGGAGATAATAATCGTTATGTGGATGATCGTTATGAAGGTGGTGGACGCCTTGGAGATAGAGATCGTTTTGATAGCAGCAGGGACAAATATGGGAGTCGCGATCGCTATGTTAGTGACAGGTACCCACCTAGCGGAGACCGCTTTGGAAGCAGTAGGTACAACAACGACTCTGGTCGATTTCCCGTAAACAGCTTTGGTAAAGATAGGGGCTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTACGAAAGCAGCGGTCCAGCACGCAACGAGGGAAGAAGCTACAGGAACAGACCAGCTCCTTACGATCGCCCTAGCAGAGCAGCAGGGAGGCCATCATCATTTGATCGTTATTGA

Coding sequence (CDS)

ATGGCGGTCGACTTCCGATGCATATATACTCATTTTTTCATCGGCGACGCGCCGGTTCTTCAGGAATCTCTAGAAGGAAACGAGGGTTCATTCTTTGAGGATATTTCACACTACACAGCACGAACAAGGAGGAGTTTTCTGAAATACGGTGTTGATATGGCTGGGAGAGATGAGTACCGAATATTTGTGGGTGGGTTATCGTGGGAAATCACGGAGCGTCAGCTTGAGAATGCCTTCAGTCGATTCGGAAAGATTATCGATTCTCAGAAACAAATCATGTTGGAAAAAAATACAGGGCGCCCACGTGGCTTTGGGTTTATCACGTTTTCAGATCGACGGGGAATGGATGATGCTATCAGAGAGATGCATGGACAGGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATGGACCACGGTTACAGGGGGGGAGGCTACTCAAGTGGTGGCAGGGATAGCAGCTATGGTGGTGGAGGAGGAGGAGATAGATCTGCTAGGCAAGATGAATGCTTCAAATGTGGACGTCCTGGACACTGGGCCAGAGATTGTCCTGTGGGCGGTGGTCGAGGAAGGGGAGGAGACTCATTTCTTTCACGTCCTCGACTTGGGGATAGCGATTATGGGGATCGCTTTGCTGGAGATAATAATCGTTATGTGGATGATCGTTATGAAGGTGGTGGACGCCTTGGAGATAGAGATCGTTTTGATAGCAGCAGGGACAAATATGGGAGTCGCGATCGCTATGTTAGTGACAGGTACCCACCTAGCGGAGACCGCTTTGGAAGCAGTAGGTACAACAACGACTCTGGTCGATTTCCCGTAAACAGCTTTGGTAAAGATAGGGGCTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTACGAAAGCAGCGGTCCAGCACGCAACGAGGGAAGAAGCTACAGGAACAGACCAGCTCCTTACGATCGCCCTAGCAGAGCAGCAGGGAGGCCATCATCATTTGATCGTTATTGA

Protein sequence

MAVDFRCIYTHFFIGDAPVLQESLEGNEGSFFEDISHYTARTRRSFLKYGVDMAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY

Homology

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BLAST of Csor.00g301660 vs. ExPASy Swiss-Prot
Match: Q8RWN5 (Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE=1 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.2e-71
Identity = 172/314 (54.78%), Postives = 206/314 (65.61%), Query Frame = 0


Query: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDR 112
           MA ++  RIFVGGLS E+T+R LE AFSRFG I+D   QIMLE++TGR RGFGFITF+DR
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDC--QIMLERDTGRSRGFGFITFADR 60

Query: 113 RGMDDAIREMHGQEFGERIISVNKAEPKMGED--MDHGYRGG---GYSSGGRDSSYGGGG 172
           R MD++IREMHG++FG+R+ISVN+AEPK+G D    HG RGG   GYS  G+  S+GGGG
Sbjct: 61  RAMDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGK-GSFGGGG 120

Query: 173 GGDRSARQDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRL--GDSDYGDRFAG--- 232
           GG     +DECFKCGR GHWARDCP  GGGRG     F SR     G     DR+A    
Sbjct: 121 GGGGRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDR 180

Query: 233 --DNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRF-GSSRYNNDSG 292
             D  RY+DDRY+G  R G RDRFD SR+ Y  RDRY SDRY    DRF G  RY+  S 
Sbjct: 181 YVDRERYIDDRYDGAARYGARDRFD-SREAYIPRDRYASDRYAAPADRFAGGDRYSRGSD 240

Query: 293 RFPVNSFGKDRGYYRDGGP-RGVDKY---ESSGPAR---NEGRSYRNRP-APYDRPSRAA 340
           R+P  S+ K R + RD  P  G D+Y    + GP R    EGR +R+R  APY+RPSR+ 
Sbjct: 241 RYPPGSYDKARSFERDIAPSAGSDRYGGGRAGGPIRGGGEEGRGFRSRAGAPYERPSRSG 300

[Close]

BLAST of Csor.00g301660 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 2.2e-68
Identity = 158/301 (52.49%), Postives = 192/301 (63.79%), Query Frame = 0


Query: 55  GRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDRRG 114
           G  E RIFVGGLSW++TERQLE+ F R+GKI  ++ QIM+ ++TGRPRGFGFITF+DRRG
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKI--TECQIMVGRDTGRPRGFGFITFTDRRG 67

Query: 115 MDDAIREMHGQEFGERIISVNKAEPKM-GEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSA 174
            DDAI+ MHG+E G ++ISVNKAEPK+ GED+D   +GGGYSS G+ +            
Sbjct: 68  ADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT------------ 127

Query: 175 RQDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLGDSD-----YGDR-------FA 234
            +DECFKC RPGHWARDCP  G  R R       R R+GD D     YGDR         
Sbjct: 128 -EDECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRYGDRDLERERERE 187

Query: 235 GDNNRYVDDRYE-GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGR 294
            + +RY+D R +  GGR   RDRFDS  DKY  RD Y  +RY P GDRF S RY      
Sbjct: 188 REFDRYMDGRRDRDGGRYSYRDRFDSG-DKYEPRDHYPFERYAPPGDRFVSDRYGMPEHH 247

Query: 295 FPVNSFGKDRGYYRDGGPRGV-DKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDR 340
                 G++R Y RD   R   D+Y   GP R+EGR YR+RP PYDRPSR  GRPSS++R
Sbjct: 248 LENEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYER 292

[Close]

BLAST of Csor.00g301660 vs. ExPASy Swiss-Prot
Match: Q9LIN3 (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.7e-33
Identity = 112/286 (39.16%), Postives = 152/286 (53.15%), Query Frame = 0


Query: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDR 112
           M+   EYR F+GGL+W  ++R L +AF ++G ++++  +++L+K +GR RGFGFITF ++
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEA--KVVLDKFSGRSRGFGFITFDEK 60

Query: 113 RGMDDAIREMHGQEFGERIISVNKAEPKMG-----EDMDHGYRGGGYSSGGRDSSYGGGG 172
           + MD+AI  M+G +   R I+V+KA+P  G      D D G R  GY    R    GG G
Sbjct: 61  KAMDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRG-RDRGYDR-DRSRPSGGRG 120

Query: 173 GGDRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRY- 232
           GGD       CFKCG+PGH+AR+CP    R  GG       R    D  DR++  ++RY 
Sbjct: 121 GGD-------CFKCGKPGHFARECPSESSRDGGG-------RFSSKD--DRYSSKDDRYG 180

Query: 233 -VDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSF 292
             DDRY         DR+ +  D+Y S+D    DRY    DR+G SR    S   P  S 
Sbjct: 181 AKDDRYG-----AKEDRYGAKDDRYSSKD----DRYSSKDDRYG-SRDGGGSRYGPDRSG 240

Query: 293 GKDRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAG 332
            +  G  RDGG RG    E            R+  APYDRP RA G
Sbjct: 241 ERAGGRSRDGGSRGAPGGE------------RHSRAPYDRP-RAGG 243

[Close]

BLAST of Csor.00g301660 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.8e-23
Identity = 72/152 (47.37%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 53  MAGRD-EYRIFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSD 112
           MA  D EYR FVGGL+W   ER LE AFS+FG+++DS  +I+ ++ TGR RGFGF+TF D
Sbjct: 1   MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDS--KIINDRETGRSRGFGFVTFKD 60

Query: 113 RRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYR--GGGYSSGGRDSSYGGGGGG 172
            + M DAI  M+GQ+   R I+VN+A+ + G     G R  GGGY  GG    YGGGGGG
Sbjct: 61  EKSMKDAIEGMNGQDLDGRSITVNEAQSR-GSGAGGGGRGGGGGYRGGG---GYGGGGGG 120

Query: 173 DRSARQDECFKCGRPGHWARDCPVGGGRGRGG 202
               R++     G  G ++     GGG G GG
Sbjct: 121 YGGGRREGGGYSGGGGGYSSRGGGGGGYGGGG 146

[Close]

BLAST of Csor.00g301660 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.1e-22
Identity = 71/152 (46.71%), Postives = 95/152 (62.50%), Query Frame = 0


Query: 53  MAGRD-EYRIFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSD 112
           MA  D EYR FVGGL+W   +R LE AFS++G+++DS  +I+ ++ TGR RGFGF+TF D
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDS--KIINDRETGRSRGFGFVTFKD 60

Query: 113 RRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYR--GGGYSSGGRDSSYGGGGGG 172
            + M DAI  M+GQ+   R I+VN+A+ + G     G R  GGGY SGG    YGGGGGG
Sbjct: 61  EKSMKDAIEGMNGQDLDGRSITVNEAQSR-GSGGGGGGRGGGGGYRSGG-GGGYGGGGGG 120

Query: 173 DRSARQDECFKCGRPGHWARDCPVGGGRGRGG 202
                ++  +  G  G+ +R    GGG G GG
Sbjct: 121 YGGGGREGGYSGGGGGYSSRG---GGGGGYGG 145

[Close]

BLAST of Csor.00g301660 vs. NCBI nr
Match: KAG6573850.1 (Glycine-rich RNA-binding protein RZ1B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 690 bits (1781), Expect = 9.59e-251
Identity = 339/339 (100.00%), Postives = 339/339 (100.00%), Query Frame = 0


Query: 1   MAVDFRCIYTHFFIGDAPVLQESLEGNEGSFFEDISHYTARTRRSFLKYGVDMAGRDEYR 60
           MAVDFRCIYTHFFIGDAPVLQESLEGNEGSFFEDISHYTARTRRSFLKYGVDMAGRDEYR
Sbjct: 1   MAVDFRCIYTHFFIGDAPVLQESLEGNEGSFFEDISHYTARTRRSFLKYGVDMAGRDEYR 60

Query: 61  IFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDRRGMDDAIR 120
           IFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDRRGMDDAIR
Sbjct: 61  IFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDRRGMDDAIR 120

Query: 121 EMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSARQDECFK 180
           EMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSARQDECFK
Sbjct: 121 EMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSARQDECFK 180

Query: 181 CGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGGGRLGDR 240
           CGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGGGRLGDR
Sbjct: 181 CGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGGGRLGDR 240

Query: 241 DRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRDGGPRGV 300
           DRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRDGGPRGV
Sbjct: 241 DRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRDGGPRGV 300

Query: 301 DKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 339
           DKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY
Sbjct: 301 DKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 339

[Close]

BLAST of Csor.00g301660 vs. NCBI nr
Match: XP_022945121.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 574 bits (1480), Expect = 9.69e-206
Identity = 285/287 (99.30%), Postives = 285/287 (99.30%), Query Frame = 0


Query: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDR 112
           MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQ  IMLEKNTGRPRGFGFITFSDR
Sbjct: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQ--IMLEKNTGRPRGFGFITFSDR 60

Query: 113 RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRS 172
           RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRS
Sbjct: 61  RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRS 120

Query: 173 ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYE 232
           ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYE
Sbjct: 121 ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYE 180

Query: 233 GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY 292
           GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY
Sbjct: 181 GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY 240

Query: 293 RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 339
           RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY
Sbjct: 241 RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 285

[Close]

BLAST of Csor.00g301660 vs. NCBI nr
Match: XP_023541916.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023541917.1 glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023541918.1 glycine-rich RNA-binding protein RZ1C-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 568 bits (1464), Expect = 2.56e-203
Identity = 284/287 (98.95%), Postives = 284/287 (98.95%), Query Frame = 0


Query: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDR 112
           MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQ  IMLEKNTGRPRGFGFITFSDR
Sbjct: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQ--IMLEKNTGRPRGFGFITFSDR 60

Query: 113 RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRS 172
           RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGG DRS
Sbjct: 61  RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGG-DRS 120

Query: 173 ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYE 232
           ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYE
Sbjct: 121 ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYE 180

Query: 233 GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY 292
           GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY
Sbjct: 181 GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY 240

Query: 293 RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 339
           RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY
Sbjct: 241 RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 284

[Close]

BLAST of Csor.00g301660 vs. NCBI nr
Match: XP_022966702.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 566 bits (1460), Expect = 1.04e-202
Identity = 283/287 (98.61%), Postives = 284/287 (98.95%), Query Frame = 0


Query: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDR 112
           MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQ  IMLEKNTGRPRGFGFITFSDR
Sbjct: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQ--IMLEKNTGRPRGFGFITFSDR 60

Query: 113 RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRS 172
           RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGG DRS
Sbjct: 61  RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGG-DRS 120

Query: 173 ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYE 232
           ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDS+YGDRFAGDNNRYVDDRYE
Sbjct: 121 ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSEYGDRFAGDNNRYVDDRYE 180

Query: 233 GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY 292
           GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY
Sbjct: 181 GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY 240

Query: 293 RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 339
           RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY
Sbjct: 241 RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 284

[Close]

BLAST of Csor.00g301660 vs. NCBI nr
Match: XP_038892830.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Benincasa hispida])

HSP 1 Score: 513 bits (1321), Expect = 1.75e-181
Identity = 264/290 (91.03%), Postives = 271/290 (93.45%), Query Frame = 0


Query: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDR 112
           MAGR+EYRIFVGGLSW+ITERQLENAF+RFGKIIDSQ  IMLEKNTGRPRGFGFITFSDR
Sbjct: 1   MAGREEYRIFVGGLSWDITERQLENAFNRFGKIIDSQ--IMLEKNTGRPRGFGFITFSDR 60

Query: 113 RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRS 172
           RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYS+GGR S  GGGGGGDRS
Sbjct: 61  RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSTGGRGSYGGGGGGGDRS 120

Query: 173 ARQDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRY 232
           ARQDECFKCGR GHWARDCP VGGGRGRGGDSFL+R RLGDSD GDRFAGDNNRYVDDRY
Sbjct: 121 ARQDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARARLGDSDRGDRFAGDNNRYVDDRY 180

Query: 233 EGGGRLGDRDRFDSS-RD-KYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDR 292
           EGGGR GDRDRFDSS RD KYGSRDRYVS+RYPP GDRFGSSRYNNDS RFPVN +GKDR
Sbjct: 181 EGGGRFGDRDRFDSSSRDNKYGSRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYGKDR 240

Query: 293 GYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 339
           GYYRDGGPRGVDKY S GPARNEGRSYRNRPAPYDRPSR  GRPSSFDRY
Sbjct: 241 GYYRDGGPRGVDKYGSGGPARNEGRSYRNRPAPYDRPSRG-GRPSSFDRY 287

[Close]

BLAST of Csor.00g301660 vs. ExPASy TrEMBL
Match: A0A6J1FZZ1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449458 PE=4 SV=1)

HSP 1 Score: 574 bits (1480), Expect = 4.69e-206
Identity = 285/287 (99.30%), Postives = 285/287 (99.30%), Query Frame = 0


Query: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDR 112
           MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQ  IMLEKNTGRPRGFGFITFSDR
Sbjct: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQ--IMLEKNTGRPRGFGFITFSDR 60

Query: 113 RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRS 172
           RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRS
Sbjct: 61  RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRS 120

Query: 173 ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYE 232
           ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYE
Sbjct: 121 ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYE 180

Query: 233 GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY 292
           GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY
Sbjct: 181 GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY 240

Query: 293 RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 339
           RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY
Sbjct: 241 RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 285

[Close]

BLAST of Csor.00g301660 vs. ExPASy TrEMBL
Match: A0A6J1HNQ1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466335 PE=4 SV=1)

HSP 1 Score: 566 bits (1460), Expect = 5.05e-203
Identity = 283/287 (98.61%), Postives = 284/287 (98.95%), Query Frame = 0


Query: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDR 112
           MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQ  IMLEKNTGRPRGFGFITFSDR
Sbjct: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQ--IMLEKNTGRPRGFGFITFSDR 60

Query: 113 RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRS 172
           RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGG DRS
Sbjct: 61  RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGG-DRS 120

Query: 173 ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYE 232
           ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDS+YGDRFAGDNNRYVDDRYE
Sbjct: 121 ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSEYGDRFAGDNNRYVDDRYE 180

Query: 233 GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY 292
           GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY
Sbjct: 181 GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY 240

Query: 293 RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 339
           RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY
Sbjct: 241 RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 284

[Close]

BLAST of Csor.00g301660 vs. ExPASy TrEMBL
Match: A0A6J1G022 (glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449458 PE=4 SV=1)

HSP 1 Score: 504 bits (1297), Expect = 8.82e-179
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0


Query: 93  MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGG 152
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGG
Sbjct: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGG 60

Query: 153 GYSSGGRDSSYGGGGGGDRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD 212
           GYSSGGRDSSYGGGGGGDRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD
Sbjct: 61  GYSSGGRDSSYGGGGGGDRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD 120

Query: 213 SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSR 272
           SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSR
Sbjct: 121 SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSR 180

Query: 273 YNNDSGRFPVNSFGKDRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR 332
           YNNDSGRFPVNSFGKDRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR
Sbjct: 181 YNNDSGRFPVNSFGKDRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR 240

Query: 333 PSSFDRY 339
           PSSFDRY
Sbjct: 241 PSSFDRY 247

[Close]

BLAST of Csor.00g301660 vs. ExPASy TrEMBL
Match: A0A6J1HSW0 (glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466335 PE=4 SV=1)

HSP 1 Score: 496 bits (1277), Expect = 9.47e-176
Identity = 245/247 (99.19%), Postives = 246/247 (99.60%), Query Frame = 0


Query: 93  MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGG 152
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGG
Sbjct: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGG 60

Query: 153 GYSSGGRDSSYGGGGGGDRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD 212
           GYSSGGRDSSYGGGGG DRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD
Sbjct: 61  GYSSGGRDSSYGGGGG-DRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD 120

Query: 213 SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSR 272
           S+YGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSR
Sbjct: 121 SEYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSR 180

Query: 273 YNNDSGRFPVNSFGKDRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR 332
           YNNDSGRFPVNSFGKDRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR
Sbjct: 181 YNNDSGRFPVNSFGKDRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR 240

Query: 333 PSSFDRY 339
           PSSFDRY
Sbjct: 241 PSSFDRY 246

[Close]

BLAST of Csor.00g301660 vs. ExPASy TrEMBL
Match: A0A1S3BGN5 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489439 PE=4 SV=1)

HSP 1 Score: 495 bits (1275), Expect = 7.67e-175
Identity = 260/290 (89.66%), Postives = 267/290 (92.07%), Query Frame = 0


Query: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDR 112
           MAGR+EYRIFVGGLSW+ITERQLENAF+RFGKIIDSQ  IMLEKNTGRPRGFGFITFSDR
Sbjct: 1   MAGREEYRIFVGGLSWDITERQLENAFNRFGKIIDSQ--IMLEKNTGRPRGFGFITFSDR 60

Query: 113 RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRS 172
           RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYS+GGR  SYGGGGG DRS
Sbjct: 61  RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSTGGR-GSYGGGGG-DRS 120

Query: 173 ARQDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRY 232
           ARQDECFKCGR GHWARDCP VGGGRGRGGDSFL+R RLGD D GDRFAGD NRYVDDRY
Sbjct: 121 ARQDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDGDRGDRFAGDTNRYVDDRY 180

Query: 233 EGGGRLGDRDRFDSS-RD-KYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDR 292
           EGGGR GDRDRFDSS RD KYGSRDRYVSDRYPP GDRFGS RYNNDS RFPVN +GKDR
Sbjct: 181 EGGGRFGDRDRFDSSSRDNKYGSRDRYVSDRYPPGGDRFGSGRYNNDSDRFPVNGYGKDR 240

Query: 293 GYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 339
           GYYRDG PRGVDKY S GPAR+EGRSYRNRPAPYDRPSR  GRPSSFDRY
Sbjct: 241 GYYRDG-PRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRG-GRPSSFDRY 284

[Close]

BLAST of Csor.00g301660 vs. TAIR 10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 271.6 bits (693), Expect = 8.8e-73
Identity = 172/314 (54.78%), Postives = 206/314 (65.61%), Query Frame = 0


Query: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDR 112
           MA ++  RIFVGGLS E+T+R LE AFSRFG I+D   QIMLE++TGR RGFGFITF+DR
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDC--QIMLERDTGRSRGFGFITFADR 60

Query: 113 RGMDDAIREMHGQEFGERIISVNKAEPKMGED--MDHGYRGG---GYSSGGRDSSYGGGG 172
           R MD++IREMHG++FG+R+ISVN+AEPK+G D    HG RGG   GYS  G+  S+GGGG
Sbjct: 61  RAMDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGK-GSFGGGG 120

Query: 173 GGDRSARQDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRL--GDSDYGDRFAG--- 232
           GG     +DECFKCGR GHWARDCP  GGGRG     F SR     G     DR+A    
Sbjct: 121 GGGGRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDR 180

Query: 233 --DNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRF-GSSRYNNDSG 292
             D  RY+DDRY+G  R G RDRFD SR+ Y  RDRY SDRY    DRF G  RY+  S 
Sbjct: 181 YVDRERYIDDRYDGAARYGARDRFD-SREAYIPRDRYASDRYAAPADRFAGGDRYSRGSD 240

Query: 293 RFPVNSFGKDRGYYRDGGP-RGVDKY---ESSGPAR---NEGRSYRNRP-APYDRPSRAA 340
           R+P  S+ K R + RD  P  G D+Y    + GP R    EGR +R+R  APY+RPSR+ 
Sbjct: 241 RYPPGSYDKARSFERDIAPSAGSDRYGGGRAGGPIRGGGEEGRGFRSRAGAPYERPSRSG 300

[Close]

BLAST of Csor.00g301660 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 260.8 bits (665), Expect = 1.6e-69
Identity = 158/301 (52.49%), Postives = 192/301 (63.79%), Query Frame = 0


Query: 55  GRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDRRG 114
           G  E RIFVGGLSW++TERQLE+ F R+GKI  ++ QIM+ ++TGRPRGFGFITF+DRRG
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKI--TECQIMVGRDTGRPRGFGFITFTDRRG 67

Query: 115 MDDAIREMHGQEFGERIISVNKAEPKM-GEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSA 174
            DDAI+ MHG+E G ++ISVNKAEPK+ GED+D   +GGGYSS G+ +            
Sbjct: 68  ADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT------------ 127

Query: 175 RQDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLGDSD-----YGDR-------FA 234
            +DECFKC RPGHWARDCP  G  R R       R R+GD D     YGDR         
Sbjct: 128 -EDECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRYGDRDLERERERE 187

Query: 235 GDNNRYVDDRYE-GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGR 294
            + +RY+D R +  GGR   RDRFDS  DKY  RD Y  +RY P GDRF S RY      
Sbjct: 188 REFDRYMDGRRDRDGGRYSYRDRFDSG-DKYEPRDHYPFERYAPPGDRFVSDRYGMPEHH 247

Query: 295 FPVNSFGKDRGYYRDGGPRGV-DKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDR 340
                 G++R Y RD   R   D+Y   GP R+EGR YR+RP PYDRPSR  GRPSS++R
Sbjct: 248 LENEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYER 292

[Close]

BLAST of Csor.00g301660 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 260.8 bits (665), Expect = 1.6e-69
Identity = 158/301 (52.49%), Postives = 192/301 (63.79%), Query Frame = 0


Query: 55  GRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDRRG 114
           G  E RIFVGGLSW++TERQLE+ F R+GKI  ++ QIM+ ++TGRPRGFGFITF+DRRG
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKI--TECQIMVGRDTGRPRGFGFITFTDRRG 67

Query: 115 MDDAIREMHGQEFGERIISVNKAEPKM-GEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSA 174
            DDAI+ MHG+E G ++ISVNKAEPK+ GED+D   +GGGYSS G+ +            
Sbjct: 68  ADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT------------ 127

Query: 175 RQDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLGDSD-----YGDR-------FA 234
            +DECFKC RPGHWARDCP  G  R R       R R+GD D     YGDR         
Sbjct: 128 -EDECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRYGDRDLERERERE 187

Query: 235 GDNNRYVDDRYE-GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGR 294
            + +RY+D R +  GGR   RDRFDS  DKY  RD Y  +RY P GDRF S RY      
Sbjct: 188 REFDRYMDGRRDRDGGRYSYRDRFDSG-DKYEPRDHYPFERYAPPGDRFVSDRYGMPEHH 247

Query: 295 FPVNSFGKDRGYYRDGGPRGV-DKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDR 340
                 G++R Y RD   R   D+Y   GP R+EGR YR+RP PYDRPSR  GRPSS++R
Sbjct: 248 LENEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYER 292

[Close]

BLAST of Csor.00g301660 vs. TAIR 10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 142.9 bits (359), Expect = 4.7e-34
Identity = 112/286 (39.16%), Postives = 152/286 (53.15%), Query Frame = 0


Query: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDR 112
           M+   EYR F+GGL+W  ++R L +AF ++G ++++  +++L+K +GR RGFGFITF ++
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEA--KVVLDKFSGRSRGFGFITFDEK 60

Query: 113 RGMDDAIREMHGQEFGERIISVNKAEPKMG-----EDMDHGYRGGGYSSGGRDSSYGGGG 172
           + MD+AI  M+G +   R I+V+KA+P  G      D D G R  GY    R    GG G
Sbjct: 61  KAMDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRG-RDRGYDR-DRSRPSGGRG 120

Query: 173 GGDRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRY- 232
           GGD       CFKCG+PGH+AR+CP    R  GG       R    D  DR++  ++RY 
Sbjct: 121 GGD-------CFKCGKPGHFARECPSESSRDGGG-------RFSSKD--DRYSSKDDRYG 180

Query: 233 -VDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSF 292
             DDRY         DR+ +  D+Y S+D    DRY    DR+G SR    S   P  S 
Sbjct: 181 AKDDRYG-----AKEDRYGAKDDRYSSKD----DRYSSKDDRYG-SRDGGGSRYGPDRSG 240

Query: 293 GKDRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAG 332
            +  G  RDGG RG    E            R+  APYDRP RA G
Sbjct: 241 ERAGGRSRDGGSRGAPGGE------------RHSRAPYDRP-RAGG 243

[Close]

BLAST of Csor.00g301660 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 103.6 bits (257), Expect = 3.2e-22
Identity = 73/180 (40.56%), Postives = 94/180 (52.22%), Query Frame = 0


Query: 58  EYRIFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDRRGMDD 117
           EYR FVGGL+W   +  L+  FS+FG +IDS  +I+ ++ +GR RGFGF+TF D + M D
Sbjct: 5   EYRCFVGGLAWATNDEDLQRTFSQFGDVIDS--KIINDRESGRSRGFGFVTFKDEKAMRD 64

Query: 118 AIREMHGQEFGERIISVNKAEPK--MGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSARQ 177
           AI EM+G+E   R+I+VN+A+ +   G     G  GGGY SGG     GGGGGG      
Sbjct: 65  AIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGG-- 124

Query: 178 DECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGGG 236
                 G  G+  R    G G G GG  +    R     YG    GD   Y      GGG
Sbjct: 125 ------GGGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYG---GGDGGSY------GGG 165

The following BLAST results are available for this feature:

BLAST of Csor.00g301660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWN5	1.2e-71	54.78	Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE...	[more]
O22703	2.2e-68	52.49	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE...	[more]
Q9LIN3	6.7e-33	39.16	Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE...	[more]
P49311	4.8e-23	47.37	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
P49310	3.1e-22	46.71	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]

BLAST of Csor.00g301660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573850.1	9.59e-251	100.00	Glycine-rich RNA-binding protein RZ1B, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022945121.1	9.69e-206	99.30	glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita moschata]	[more]
XP_023541916.1	2.56e-203	98.95	glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita pepo subsp. pep...	[more]
XP_022966702.1	1.04e-202	98.61	glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita maxima]	[more]
XP_038892830.1	1.75e-181	91.03	glycine-rich RNA-binding protein RZ1C-like isoform X1 [Benincasa hispida]	[more]

BLAST of Csor.00g301660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FZZ1	4.69e-206	99.30	glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita moschata OX=3...	[more]
A0A6J1HNQ1	5.05e-203	98.61	glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita maxima OX=366...	[more]
A0A6J1G022	8.82e-179	100.00	glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Cucurbita moschata OX=3...	[more]
A0A6J1HSW0	9.47e-176	99.19	glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Cucurbita maxima OX=366...	[more]
A0A1S3BGN5	7.67e-175	89.66	glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo OX=3656 GN...	[more]

BLAST of Csor.00g301660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04280.1	8.8e-73	54.78	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.1	1.6e-69	52.49	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.2	1.6e-69	52.49	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT3G26420.1	4.7e-34	39.16	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT4G39260.1	3.2e-22	40.56	cold, circadian rhythm, and RNA binding 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 60..135 e-value: 8.5E-25 score: 98.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 61..132 e-value: 1.0E-17 score: 63.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 59..139 score: 17.711065
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 177..193 e-value: 7.8E-6 score: 35.4
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 177..192 e-value: 1.7E-8 score: 34.2
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 178..192 score: 11.383412
None	No IPR available	GENE3D	4.10.60.10		coord: 173..215 e-value: 1.4E-8 score: 36.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 291..308
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..339
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..261
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..173
None	No IPR available	PANTHER	PTHR15241:SF294	GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE	coord: 53..299
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 53..299
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 46..172 e-value: 2.7E-29 score: 104.1
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 160..194
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 54..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g301660.m01	Csor.00g301660.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding