Csor.00g301500 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g301500
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr18: 10585799 .. 10588835 (+)
RNA-Seq ExpressionCsor.00g301500
SyntenyCsor.00g301500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATTTCTTGCTCGGCTCGAAAAGAACGTATCCATTACGCACTTTAGATCATAAAGACTCGTAATTGAGCTTTAAATATTAGCATAGCATAGAGTGTTATCAAGCATAATTAGCTTATCCATAACGAAGACTTTTATTTACTTTTTAGGTTGCATTTATTGTGACTATGGTCATAAAATGTTACAAACAACCTAAAGCCCACAACTATCAGATATTGTCTGTTTTGGTCGGTTACATATCACAGTGAGTCTCACAGTTTTAAAACACTTAGAAATAATATTTAGTAGCACAGGACTGAGCCGTTACAAATGGTATCAGAGCCAGTCATTAGACGGTACGAGACACTAGTCAAAATAGAGTTAAACCTGTATAATAGACCATTTTACAGACCCATGAATAAGAAACTGTGGCAACCATGAGCGGCGCGATTTAGAGGGCCCCACACTAAACGGTCACAATAAATGCTCTTATTTTCTCAACCAAATTTCTTTCATTTTCTATTTTTCGCTATCCTCTGCTTCACGAGCCTCACGGCTTAGAGATCCAGAAGCCAAAAATCTAGCTGCGAGGGATTTTCTTCAATCGTTGTTCATCAGGTAATCTTGTTAATCTATATATGCAAACATTTTGTTTTGATTTCTCCTGGATTGATCTGATCGCAGTGATCTTTCGCTGTTTTTTCTAGGTTTTTCTGAAGGCGTCTTAGCGGACATTGAAGGAGCTCAAGACCTTGCAGCGCGATCCTCCGTCCTATTGCAGTGCTGGTATTTTGTTTCCTTCTATGTCCTTTTTGCTTTGATGTTTGCTGCTGGTTGGAATCGGATGGTTTAATTTTGATCTGATTGAGAAAATTCTGCTTCGATTGGTGCGTTTCGATAGCCTGAATTGTGTTGCTTGCTGATCTTAGTTTCTAGAGTTGTTTCTGTGTGCTATGAATGAGATTGAGATGTTGAGGATTGTTCGGCTACTGAAATACATCTCGATCTTAAAAACTTATATCTTATGAATTCCTTTGAAAAATACATCTTCATTGTTACGAGATCTTAACGAATTCATATCTTATGAATTCCTTTTAAAGAAACTCATTTCATTTGAAACTTTTTTGTGTAAATGTATTGTTTCTGAATTATTTTCGAAGGAAGTTTTTGATTAGGAAGCCTTCTAAGTTCTTATTCACGTCACTATTTCTTACTTCAATTCCCGAAGTTTCTCCATTCATAATCGAAAATTTCCTCGATTTTAATATATATTTTAAAAATATTTATTCCAAATAAATTTTCAATACATGATTTGTATTTTCTAATATAATTTTTACTAAAAATATAAAATATTGTAATAAATAAAATAATTTCAAATAAATTTTTAATACATAATTTGTATTTTCTAATATAATTTTTACTCAAAATAGAAAATATTGTAATAAATAAAATAATTTCAAACAAATTTTTAATACATAATTTATAATTTTTAATATAATTTTTACTAAAAATATAAAATATCGTAACAAATAAAAAATATAATATGACAATTTTAATACATACGTGTGTATACATACACTTCGAGTAAATAAATAAAGTTATAAGAAATAGATATAAAGTGAGGCAGTGGAGTTGGCGTAGGAGACCACAAATATAGTTATGTTTTCCGTTCCATTTAGCTAAAGAAAAAAAATTTCTCTCAAATTCGAACATGTAGCCATAGTGGCCGATAATCAAATCGCTTGACGATATGTTCTAGTGAGCCAGATGGAGTGTTTGTTTTCCGTTTTACAAACAATTTTTTTCCTCGAGATTTATTTATTTATTATACTGTATTTGTTTTACATGGAATTTTCAGTTTTTAAACCTACATTTAATTTTTAAAATTTATAAAGATTAACTAAAAAACATTTTTTTAAATAGTATTGCAAAAAAAAAAAAAAAAAAAAAAAAACCACATCTTTTAAAATATAAGGATGAAAGTGAACAAAATCTAAATTGATATTAAAAAAATACAATTATTGAAACAAGATAAATATTAATTAAGGTAGCATTCAATTATTTATTTATTTTTTAATTGTATTTTTTAAAAATTCCTAATATCTAATGTCATAGTGGATGTCAAAAATATATATTATAATTTATTGAACTATTATTTTAATTTAAAAAAAAAACCCTATAGCTATGTTTAATTAATGAATTAATTCAATATATATATATATATAAATAAATTTTGTTTGAAAAAATGCATATCCTAAAACAAGAAGTACTAATTAATTAATTAATTTTTTTTTTTTTAAAGAAACAAACAGAAAGTGGGTAATTTACAGTAATGTGGAAAAGTTTACCTGTCCCATACGACTCGCCATCCCAGAGCGATGTGATGTGAGCCATAGTGACAGTGGACTCTCTGCGAACGATCTGCACCGTGCGTATCATCGGTCTCCACCCGAGGTAATAAGCGATCAGTTCATCCCGTTTTCTTCTCGAAATTATCAATTTCCAATTCGAATATGGTATTCTTTTTCTTCCTACATCATCTTCTTCAATCATTTTATCAATTACTTTCTACTTGATGAGCCTGTTGCCATTGTAGGTTGCTGTATGAGCTTCGTTTATTATCCAGTTGTTATTTATAGCTCAAGACTCGGATCTTTTGTTTTGCTTTAAAACATTTTGTTGCCGTACGGAATCGGTTGAGCTGAGAATTTGTTCCCGTAAAGTTTTTGTTTTGTTTTGTTTTGTTTTGTTTCACACTGAATCTTGCAATTTATTGAATCTTCTTGATCTGGATTACTTGATGCGAGTTTGATTGCATATCTTTTGGTCGTGCCTACTTGTTTGCTGAAGAAAATCATGGATTAGATTGGAAATTTGGGTTTGACTATGTTTTGTTGAGATGTAACTCGAAGCTGAAGAATGACGGAAGCAGTTTTTTAGAAAGGTTTTGTGCTTAATGTATTCGGGATAGAGTTAAATAGGATTATTCTTAACAAGTCAAATTGTGGAGGTATTGTACTGACTTCCCTTCTCTTTGTTTATGTCCAGTTGTTTAG

mRNA sequence

ATGCAATTTCTTGCTCGGCTCGAAAAGAACCTGCGAGGGATTTTCTTCAATCGTTGTTCATCAGGTTTTTCTGAAGGCGTCTTAGCGGACATTGAAGGAGCTCAAGACCTTGCAGCGCGATCCTCCGTCCTATTGCAGTGCTGGTATTTTGTTTCCTTCTATGTCCTTTTTGCTTTGATGTTTGCTGCTGGTTGGAATCGGATGTGGACTCTCTGCGAACGATCTGCACCGTGCGTATCATCGGTCTCCACCCGAGTTGTTTAG

Coding sequence (CDS)

ATGCAATTTCTTGCTCGGCTCGAAAAGAACCTGCGAGGGATTTTCTTCAATCGTTGTTCATCAGGTTTTTCTGAAGGCGTCTTAGCGGACATTGAAGGAGCTCAAGACCTTGCAGCGCGATCCTCCGTCCTATTGCAGTGCTGGTATTTTGTTTCCTTCTATGTCCTTTTTGCTTTGATGTTTGCTGCTGGTTGGAATCGGATGTGGACTCTCTGCGAACGATCTGCACCGTGCGTATCATCGGTCTCCACCCGAGTTGTTTAG

Protein sequence

MQFLARLEKNLRGIFFNRCSSGFSEGVLADIEGAQDLAARSSVLLQCWYFVSFYVLFALMFAAGWNRMWTLCERSAPCVSSVSTRVV
Homology
[Close]
BLAST of Csor.00g301500 vs. NCBI nr
Match: KAG6573834.1 (hypothetical protein SDJN03_27721, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177 bits (450), Expect = 3.96e-56
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQFLARLEKNLRGIFFNRCSSGFSEGVLADIEGAQDLAARSSVLLQCWYFVSFYVLFALM 60
          MQFLARLEKNLRGIFFNRCSSGFSEGVLADIEGAQDLAARSSVLLQCWYFVSFYVLFALM
Sbjct: 1  MQFLARLEKNLRGIFFNRCSSGFSEGVLADIEGAQDLAARSSVLLQCWYFVSFYVLFALM 60

Query: 61 FAAGWNRMWTLCERSAPCVSSVSTRVV 87
          FAAGWNRMWTLCERSAPCVSSVSTRVV
Sbjct: 61 FAAGWNRMWTLCERSAPCVSSVSTRVV 87

[Close]
BLAST of Csor.00g301500 vs. NCBI nr
Match: KAG7012901.1 (hypothetical protein SDJN02_25654, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.8 bits (242), Expect = 1.96e-24
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 22 GFSEGVLADIEGAQDLAARSSVLLQCWYFVSFYVLFALMFAAGWNRM 68
          GFSEGVLADIEGAQDLAARSSVLLQCWYFVSFYVLFALMFAAGWNRM
Sbjct: 38 GFSEGVLADIEGAQDLAARSSVLLQCWYFVSFYVLFALMFAAGWNRM 84

The following BLAST results are available for this feature:
BLAST of Csor.00g301500 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g301500 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6573834.13.96e-56100.00hypothetical protein SDJN03_27721, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7012901.11.96e-24100.00hypothetical protein SDJN02_25654, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Csor.00g301500 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g301500 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g301500.m01Csor.00g301500.m01mRNA