Csor.00g301170 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g301170
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein LATERAL ROOT PRIMORDIUM 1
Location	Csor_Chr18: 10356333 .. 10357408 (-)
RNA-Seq Expression	Csor.00g301170
Synteny	Csor.00g301170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGTCTCAGAGATGTTCTGTTTTTAGCTCCGACGTCTACTTCCGATCATCATTCTTCTCTTCCTCTCCACTCCCCCGCCGCTCTTGGTGTCAGCGTTGGCATATTTCCACTTTTAGCGGCAACCCCATCTCTCCCGCCTCCTCCTCAGCCGCCGCCTAATCAAACGGCTGAGGAAGTTAGTGATCGTACTCGGAGTTTGAAGAATCTGAAGAAAACCCATGATTTTGGGTTTGGGAAAGGGGATTCGTTTATTGCCGGCGACAAAGGCGACGCCGGCGAGAGCTCCATGGCGGTTTGTAGGGACTGTGGAAACAGAGCTAAAAAAGAGTGTGAGTATCGGAGGTGCAGGACTTGTTGTAAAGGACGTGGGAATCATTGCTCTACTCATGTGAAGAGTACTTGGGTTCCGGCGTCTCGCCGCCGTGAACGTCAGATGTTGGTGGTGATGGACGGCGTTGCCACTGCGAGTGGCGACGGTGGTTCTTCTGGTTCTTCGTCTGCTGGTGCTAAAAGACCCAGAGTTTTGATTCCTTCGCAGAGTACTCCTCCCGCCGCCGCCTCTCACGCTTCTGCCTCCATTGCCACCACCTCCAGGAGCTTTGAAACAACCTCCAACCATCAAGGTGGTTCTCTCTGTTTCTCTCTGTTTTCCTCTGTTTCTCTCTGTTTCTCTCTGTTTCTCTGTGTGTAATGATTTGTTTATCTGTTCTTGAGAAAACTCAACAATCTTTTCATATTTCACTCTGTTTTCCTCATGATCTTGAATTCAGTAGATTCAAATTGTTCATCTTCAAATCTGCTCTGTTTCTGGAACTCTGATGGCTTTTGACAACAGATGCAAGCTTCAAGAAGTCGCTACCGGGGCAAGTTCGTGCCCCGGCGGTGTTCCGGTACCATAGAGTGACAGCCATTAGCAGTGGTGAAGGAGAGTTAGCATACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTTTCTGTATGATCAAGGAGTTGTTGATCACAAAAATGGATACCCATCTCTTTCACATCTCCATTTGGAAAGTGGTAGCCATCACAGGGAATAG

mRNA sequence

ATGTTGGGTCTCAGAGATGTTCTGTTTTTAGCTCCGACGTCTACTTCCGATCATCATTCTTCTCTTCCTCTCCACTCCCCCGCCGCTCTTGGTGTCAGCGTTGGCATATTTCCACTTTTAGCGGCAACCCCATCTCTCCCGCCTCCTCCTCAGCCGCCGCCTAATCAAACGGCTGAGGAAGTTAGTGATCGTACTCGGAGTTTGAAGAATCTGAAGAAAACCCATGATTTTGGGTTTGGGAAAGGGGATTCGTTTATTGCCGGCGACAAAGGCGACGCCGGCGAGAGCTCCATGGCGGTTTGTAGGGACTGTGGAAACAGAGCTAAAAAAGAGTGTGAGTATCGGAGGTGCAGGACTTGTTGTAAAGGACGTGGGAATCATTGCTCTACTCATGTGAAGAGTACTTGGGTTCCGGCGTCTCGCCGCCGTGAACGTCAGATGTTGGTGGTGATGGACGGCGTTGCCACTGCGAGTGGCGACGGTGGTTCTTCTGGTTCTTCGTCTGCTGGTGCTAAAAGACCCAGAGTTTTGATTCCTTCGCAGAGTACTCCTCCCGCCGCCGCCTCTCACGCTTCTGCCTCCATTGCCACCACCTCCAGGAGCTTTGAAACAACCTCCAACCATCAAGATGCAAGCTTCAAGAAGTCGCTACCGGGGCAAGTTCGTGCCCCGGCGGTGTTCCGGTACCATAGAGTGACAGCCATTAGCAGTGGTGAAGGAGAGTTAGCATACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTTTCTGTATGATCAAGGAGTTGTTGATCACAAAAATGGATACCCATCTCTTTCACATCTCCATTTGGAAAGTGGTAGCCATCACAGGGAATAG

Coding sequence (CDS)

ATGTTGGGTCTCAGAGATGTTCTGTTTTTAGCTCCGACGTCTACTTCCGATCATCATTCTTCTCTTCCTCTCCACTCCCCCGCCGCTCTTGGTGTCAGCGTTGGCATATTTCCACTTTTAGCGGCAACCCCATCTCTCCCGCCTCCTCCTCAGCCGCCGCCTAATCAAACGGCTGAGGAAGTTAGTGATCGTACTCGGAGTTTGAAGAATCTGAAGAAAACCCATGATTTTGGGTTTGGGAAAGGGGATTCGTTTATTGCCGGCGACAAAGGCGACGCCGGCGAGAGCTCCATGGCGGTTTGTAGGGACTGTGGAAACAGAGCTAAAAAAGAGTGTGAGTATCGGAGGTGCAGGACTTGTTGTAAAGGACGTGGGAATCATTGCTCTACTCATGTGAAGAGTACTTGGGTTCCGGCGTCTCGCCGCCGTGAACGTCAGATGTTGGTGGTGATGGACGGCGTTGCCACTGCGAGTGGCGACGGTGGTTCTTCTGGTTCTTCGTCTGCTGGTGCTAAAAGACCCAGAGTTTTGATTCCTTCGCAGAGTACTCCTCCCGCCGCCGCCTCTCACGCTTCTGCCTCCATTGCCACCACCTCCAGGAGCTTTGAAACAACCTCCAACCATCAAGATGCAAGCTTCAAGAAGTCGCTACCGGGGCAAGTTCGTGCCCCGGCGGTGTTCCGGTACCATAGAGTGACAGCCATTAGCAGTGGTGAAGGAGAGTTAGCATACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTTTCTGTATGATCAAGGAGTTGTTGATCACAAAAATGGATACCCATCTCTTTCACATCTCCATTTGGAAAGTGGTAGCCATCACAGGGAATAG

Protein sequence

MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLKNLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE

Homology

[Close]

BLAST of Csor.00g301170 vs. ExPASy Swiss-Prot
Match: Q94CK9 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 5.1e-50
Identity = 135/307 (43.97%), Postives = 178/307 (57.98%), Query Frame = 0


Query: 1   MLGLRDVLFLAPT---------STSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQ 60
           M+GLRDV  +AP          S SDH +S   ++ AA  + VG+ PLL A         
Sbjct: 3   MVGLRDVFLVAPAYHHQNAGVISGSDHMNS---NAAAAAALGVGVIPLLTA--------- 62

Query: 61  PPPNQTAEEV-------SDRTRSLKNLKKTHDFGFGKGDSFIAGDKGD-----AGESSMA 120
             P Q  E+        + R ++  N  +T    F   +    G   +     +G S  A
Sbjct: 63  GTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSGSGSGASGTA 122

Query: 121 VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASG 180
            C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++        A+ 
Sbjct: 123 TCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM-----PTGANP 182

Query: 181 DGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSRSFETTSNHQD-ASFKKSLP 240
             GSS S+S+G K+PR++   Q     A SH S S  T  +SFET+S+ QD    +++ P
Sbjct: 183 TAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTS-NTPPQSFETSSSRQDGGGSREAWP 242

Query: 241 GQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLH 286
           GQVRA AVF+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG ++ K G+PS+S LH
Sbjct: 243 GQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQG-LEPKEGFPSMSDLH 290

[Close]

BLAST of Csor.00g301170 vs. ExPASy Swiss-Prot
Match: Q9M2U4 (Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.8e-32
Identity = 83/188 (44.15%), Postives = 106/188 (56.38%), Query Frame = 0


Query: 89  DKGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQML 148
           D    GE    VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P+S  R     
Sbjct: 32  DNNTVGEK---VCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATR----- 91

Query: 149 VVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSRSFETTSNH 208
                            SSS   ++ ++ I  QS+P  +                TT++ 
Sbjct: 92  ----------------SSSSPSERKKKLKIDKQSSPNVSL-------------LPTTTSR 151

Query: 209 QDASFKKSLPGQVRAPAVFRYHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGVVDH 268
           Q+  F++ LPG++ APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G VDH
Sbjct: 152 QERGFREGLPGKIEAPAVFKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYG-VDH 181

Query: 269 KNGYPSLS 276
              +P LS
Sbjct: 212 NKAFPCLS 181

[Close]

BLAST of Csor.00g301170 vs. ExPASy Swiss-Prot
Match: O65517 (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.0e-30
Identity = 84/180 (46.67%), Postives = 110/180 (61.11%), Query Frame = 0


Query: 89  DKGDAGESSMAV---CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRER 148
           D  D   SS ++   CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P +RRRER
Sbjct: 79  DVSDLATSSRSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRER 138

Query: 149 QMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASAS-IATTSRSFET 208
           Q  + M    + SG GG SGS  AG       IP +   P     +S+S + + S   E 
Sbjct: 139 QQQLHM----STSGGGGGSGSGGAGGGGSS--IPKRHRDPTLPGTSSSSRLPSHSAGLEM 198

Query: 209 TSNHQDASFKKSLPGQVRAPAVFRYHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQG 264
                +ASF    PG+V + A+FR  +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG
Sbjct: 199 ----GEASF----PGEVSSDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQG 244

[Close]

BLAST of Csor.00g301170 vs. ExPASy Swiss-Prot
Match: Q9LQZ5 (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.0e-26
Identity = 86/225 (38.22%), Postives = 116/225 (51.56%), Query Frame = 0


Query: 53  PPNQTAEEVSDRTRSLK-NLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKE 112
           P   ++   ++R+RSL  N+   H+ G      F    +G         C+DCGN+AKK+
Sbjct: 87  PSGSSSNNNNNRSRSLYFNVVSDHEPG-----GFTVTRQGGMN------CQDCGNQAKKD 146

Query: 113 CEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGA 172
           C + RCRTCCK RG HC THVKSTWVPA++RRER     +  +A+      SS   +  A
Sbjct: 147 CPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRER-----LAQLASLQHHSASS-RETQNA 206

Query: 173 KRPRVLIPSQSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHR 232
           KR R      +      S    S    +R     SN       + LP +V +PA+FR  R
Sbjct: 207 KRLREASGGDNNDDKDHSGGGGSALANTRVVNANSN-SGLEVSQHLPPEVNSPAIFRCVR 266

Query: 233 VTAISSGEGE--LAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSL 275
           V++I   E +   AYQ  VNIGGH+FKG LYDQG     N + +L
Sbjct: 267 VSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQDNHHLNL 293

[Close]

BLAST of Csor.00g301170 vs. ExPASy Swiss-Prot
Match: Q9XGX0 (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.9e-26
Identity = 75/169 (44.38%), Postives = 98/169 (57.99%), Query Frame = 0


Query: 101 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGD 160
           C+DCGN++KK+C + RCRTCCK RG  C THVKSTWVPA++RRERQ       ++T    
Sbjct: 120 CQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQ-----QQLSTGQQP 179

Query: 161 GGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQ 220
               GS     KR R  IP++ST          S+A T      TS  +  +F    P +
Sbjct: 180 QQLGGSV---PKRQRERIPARST----------SMAYTRIPSNNTSGLEVGNF----PPE 239

Query: 221 VRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKN 270
           V + AVFR  RV+++   E E AY+  V+IGGHVFKG LYDQG  +  +
Sbjct: 240 VSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGPAERSS 266

[Close]

BLAST of Csor.00g301170 vs. NCBI nr
Match: KAG6573801.1 (Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 563 bits (1452), Expect = 2.40e-202
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0


Query: 1   MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEE 60
           MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEE
Sbjct: 1   MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEE 60

Query: 61  VSDRTRSLKNLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRTC 120
           VSDRTRSLKNLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRTC
Sbjct: 61  VSDRTRSLKNLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRTC 120

Query: 121 CKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS 180
           CKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS
Sbjct: 121 CKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS 180

Query: 181 QSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEG 240
           QSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEG
Sbjct: 181 QSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEG 240

Query: 241 ELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE 287
           ELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
Sbjct: 241 ELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE 287

[Close]

BLAST of Csor.00g301170 vs. NCBI nr
Match: XP_022945608.1 (protein SHI RELATED SEQUENCE 6-like [Cucurbita moschata] >KAG7012875.1 Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 555 bits (1430), Expect = 5.22e-199
Identity = 285/287 (99.30%), Postives = 286/287 (99.65%), Query Frame = 0


Query: 1   MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEE 60
           MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEE
Sbjct: 1   MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEE 60

Query: 61  VSDRTRSLKNLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRTC 120
           VSDRTRSL+NLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRTC
Sbjct: 61  VSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRTC 120

Query: 121 CKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS 180
           CKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS
Sbjct: 121 CKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS 180

Query: 181 QSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEG 240
           QSTP AAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEG
Sbjct: 181 QSTP-AAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEG 240

Query: 241 ELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE 287
           ELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
Sbjct: 241 ELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE 286

[Close]

BLAST of Csor.00g301170 vs. NCBI nr
Match: XP_023541249.1 (protein SHI RELATED SEQUENCE 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 553 bits (1425), Expect = 3.02e-198
Identity = 284/287 (98.95%), Postives = 285/287 (99.30%), Query Frame = 0


Query: 1   MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEE 60
           MLGLRDVLFLAPTSTSDHH SLPLHSPAALGVSVGIFPLLAATPSLPPPPQPP NQTAEE
Sbjct: 1   MLGLRDVLFLAPTSTSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPP-NQTAEE 60

Query: 61  VSDRTRSLKNLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRTC 120
           VSDRTRSL+NLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRTC
Sbjct: 61  VSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRTC 120

Query: 121 CKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS 180
           CKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS
Sbjct: 121 CKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS 180

Query: 181 QSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEG 240
           QSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEG
Sbjct: 181 QSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEG 240

Query: 241 ELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE 287
           ELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
Sbjct: 241 ELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE 286

[Close]

BLAST of Csor.00g301170 vs. NCBI nr
Match: XP_022967015.1 (protein SHI RELATED SEQUENCE 6-like [Cucurbita maxima])

HSP 1 Score: 546 bits (1408), Expect = 1.27e-195
Identity = 280/288 (97.22%), Postives = 283/288 (98.26%), Query Frame = 0


Query: 1   MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPP-NQTAE 60
           MLGLRDVLFLAPTSTSDHH SLPLHSPAALGVSVGIFPLLAATPSLPPPP PPP N+TAE
Sbjct: 1   MLGLRDVLFLAPTSTSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPPPPPPNRTAE 60

Query: 61  EVSDRTRSLKNLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRT 120
           EVSDRTRS +NLK+THDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRT
Sbjct: 61  EVSDRTRSSENLKRTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRT 120

Query: 121 CCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIP 180
           CCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIP
Sbjct: 121 CCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIP 180

Query: 181 SQSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGE 240
           SQSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVR PAVFRYHRVTAISSGE
Sbjct: 181 SQSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRTPAVFRYHRVTAISSGE 240

Query: 241 GELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE 287
           GELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
Sbjct: 241 GELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE 288

[Close]

BLAST of Csor.00g301170 vs. NCBI nr
Match: XP_038892899.1 (protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida])

HSP 1 Score: 449 bits (1156), Expect = 5.19e-157
Identity = 243/306 (79.41%), Postives = 262/306 (85.62%), Query Frame = 0


Query: 1   MLGLRDVLFLAPTSTS----------DHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPP 60
           MLGLRDVLF+APT +S          DHH SLPL S AALGVSVGIFPLL ATP L PPP
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLTATPCL-PPP 60

Query: 61  QPPPNQTAEEVSDRTRSLKNLKKTHDFGFGKGDSFIAGD---------KGDAGESSMAVC 120
           QP PNQTA++V+DR+RSL+NLK+T DFGFGKGDS + G          KGDAG+ SMAVC
Sbjct: 61  QPLPNQTADDVTDRSRSLENLKRTQDFGFGKGDSLMGGAGNNVSDEQVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVATASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQV 240
           GSSGSSSAGAKRPRVLIPSQST  AAA+ AS S ATT RSFETTS+HQDASFKKSLPG V
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQST--AAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHV 240

Query: 241 RAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLES 287
           RAPAVFR HRVTAI+SGEGELAYQATVNIGGHVFKGFLYDQG  D KN +PS+SHLHL+S
Sbjct: 241 RAPAVFRCHRVTAINSGEGELAYQATVNIGGHVFKGFLYDQGA-DDKNAFPSISHLHLDS 300

[Close]

BLAST of Csor.00g301170 vs. ExPASy TrEMBL
Match: A0A6J1G1D4 (protein SHI RELATED SEQUENCE 6-like OS=Cucurbita moschata OX=3662 GN=LOC111449793 PE=3 SV=1)

HSP 1 Score: 555 bits (1430), Expect = 2.53e-199
Identity = 285/287 (99.30%), Postives = 286/287 (99.65%), Query Frame = 0


Query: 1   MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEE 60
           MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEE
Sbjct: 1   MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEE 60

Query: 61  VSDRTRSLKNLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRTC 120
           VSDRTRSL+NLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRTC
Sbjct: 61  VSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRTC 120

Query: 121 CKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS 180
           CKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS
Sbjct: 121 CKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPS 180

Query: 181 QSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEG 240
           QSTP AAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEG
Sbjct: 181 QSTP-AAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEG 240

Query: 241 ELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE 287
           ELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
Sbjct: 241 ELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE 286

[Close]

BLAST of Csor.00g301170 vs. ExPASy TrEMBL
Match: A0A6J1HT71 (protein SHI RELATED SEQUENCE 6-like OS=Cucurbita maxima OX=3661 GN=LOC111466543 PE=3 SV=1)

HSP 1 Score: 546 bits (1408), Expect = 6.14e-196
Identity = 280/288 (97.22%), Postives = 283/288 (98.26%), Query Frame = 0


Query: 1   MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPP-NQTAE 60
           MLGLRDVLFLAPTSTSDHH SLPLHSPAALGVSVGIFPLLAATPSLPPPP PPP N+TAE
Sbjct: 1   MLGLRDVLFLAPTSTSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPPPPPPNRTAE 60

Query: 61  EVSDRTRSLKNLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRT 120
           EVSDRTRS +NLK+THDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRT
Sbjct: 61  EVSDRTRSSENLKRTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRT 120

Query: 121 CCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIP 180
           CCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIP
Sbjct: 121 CCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIP 180

Query: 181 SQSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGE 240
           SQSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVR PAVFRYHRVTAISSGE
Sbjct: 181 SQSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRTPAVFRYHRVTAISSGE 240

Query: 241 GELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE 287
           GELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
Sbjct: 241 GELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE 288

[Close]

BLAST of Csor.00g301170 vs. ExPASy TrEMBL
Match: A0A0A0KWX6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623840 PE=3 SV=1)

HSP 1 Score: 444 bits (1142), Expect = 3.53e-155
Identity = 240/306 (78.43%), Postives = 256/306 (83.66%), Query Frame = 0


Query: 1   MLGLRDVLFLAPTSTS----------DHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPP 60
           MLGLRDVLF+APT +S          DHH SLPL S  ALGVSVGIFPLLAATP LPP  
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  QPPPNQTAEEVSDRTRSLKNLKKTHDFGFGKGDSFIAGD---------KGDAGESSMAVC 120
            PP N T ++V+DRTR+  NLK+T DFGFGKG+S IAG          KGDAG+ SMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVATASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQV 240
           GSSGSSSAGAKRPRVLIPSQS   AAA+ AS S ATT RSFETTS+HQDASFKKSLPG V
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSA--AAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHV 240

Query: 241 RAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLES 287
           RAPAVFR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG  D KN +PS+SHLHL+S
Sbjct: 241 RAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGA-DDKNAFPSISHLHLDS 300

[Close]

BLAST of Csor.00g301170 vs. ExPASy TrEMBL
Match: A0A1S3BFS5 (protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo OX=3656 GN=LOC103489517 PE=3 SV=1)

HSP 1 Score: 442 bits (1138), Expect = 1.43e-154
Identity = 239/306 (78.10%), Postives = 255/306 (83.33%), Query Frame = 0


Query: 1   MLGLRDVLFLAPTSTS----------DHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPP 60
           MLGLRDVLF+APT +S          DHH SLPL S  ALGVSVGIFPLLAATP LPP  
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  QPPPNQTAEEVSDRTRSLKNLKKTHDFGFGKGDSFIAGD---------KGDAGESSMAVC 120
            PP N T ++V+DRTR+  NLK+T DFGFGKG+S I G          KGDAG+ SMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVATASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQV 240
           GSSGSSSAGAKRPRVLIPSQS   AAA+ AS S ATT RSFETTS+HQDASFKKSLPG V
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSA--AAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHV 240

Query: 241 RAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLES 287
           RAPAVFR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG  D KN +PS+SHLHL+S
Sbjct: 241 RAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGA-DDKNAFPSISHLHLDS 300

[Close]

BLAST of Csor.00g301170 vs. ExPASy TrEMBL
Match: A0A6J1CEG6 (protein LATERAL ROOT PRIMORDIUM 1 OS=Momordica charantia OX=3673 GN=LOC111009988 PE=3 SV=1)

HSP 1 Score: 442 bits (1136), Expect = 3.71e-154
Identity = 244/309 (78.96%), Postives = 259/309 (83.82%), Query Frame = 0


Query: 1   MLGLRDVLFLAPTSTS-----------DHHSSLPLHSPAALGVSVGIFPLLAATPSLPPP 60
           MLGLRDVLF+APT +S           DHH SLPL S AALGVSVGIFPLLAATP LP P
Sbjct: 5   MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQP 64

Query: 61  PQPPPNQTAEEVSDRTRSLKNLKKTHDFGFGKGDSFIAGD--------KGDAGESSMAVC 120
           P PPP   A EVS+R R + NLK+T DFGFGKGDS IAG         +GDAG+SSM VC
Sbjct: 65  PPPPP--PAAEVSER-RGVDNLKRTQDFGFGKGDSLIAGGNNALDEPVRGDAGDSSMGVC 124

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKEC+YRRCRTCCKGRGNHCSTHVKSTWV A+RRRERQMLVVMDGVATASGDG
Sbjct: 125 RDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDG 184

Query: 181 GSSGSSSAGAKRPRVLIPSQSTPPAAA---SHASASIATTSRSFETTSNHQDASFKKSLP 240
           GSSGSSSAGAKRPRVLIPSQST  AAA   SHAS S ATT RSFET+SNHQDASFKKSLP
Sbjct: 185 GSSGSSSAGAKRPRVLIPSQSTAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLP 244

Query: 241 GQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLH 287
           GQVRAPAVFR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG+ D KNG+PS+SHLH
Sbjct: 245 GQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGI-DDKNGFPSVSHLH 304

[Close]

BLAST of Csor.00g301170 vs. TAIR 10
Match: AT5G12330.2 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 199.5 bits (506), Expect = 3.6e-51
Identity = 135/307 (43.97%), Postives = 178/307 (57.98%), Query Frame = 0


Query: 1   MLGLRDVLFLAPT---------STSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQ 60
           M+GLRDV  +AP          S SDH +S   ++ AA  + VG+ PLL A         
Sbjct: 3   MVGLRDVFLVAPAYHHQNAGVISGSDHMNS---NAAAAAALGVGVIPLLTA--------- 62

Query: 61  PPPNQTAEEV-------SDRTRSLKNLKKTHDFGFGKGDSFIAGDKGD-----AGESSMA 120
             P Q  E+        + R ++  N  +T    F   +    G   +     +G S  A
Sbjct: 63  GTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSGSGSGASGTA 122

Query: 121 VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASG 180
            C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++        A+ 
Sbjct: 123 TCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM-----PTGANP 182

Query: 181 DGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSRSFETTSNHQD-ASFKKSLP 240
             GSS S+S+G K+PR++   Q     A SH S S  T  +SFET+S+ QD    +++ P
Sbjct: 183 TAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTS-NTPPQSFETSSSRQDGGGSREAWP 242

Query: 241 GQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLH 286
           GQVRA AVF+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG ++ K G+PS+S LH
Sbjct: 243 GQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQG-LEPKEGFPSMSDLH 290

[Close]

BLAST of Csor.00g301170 vs. TAIR 10
Match: AT5G12330.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 199.5 bits (506), Expect = 3.6e-51
Identity = 135/307 (43.97%), Postives = 178/307 (57.98%), Query Frame = 0


Query: 1   MLGLRDVLFLAPT---------STSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQ 60
           M+GLRDV  +AP          S SDH +S   ++ AA  + VG+ PLL A         
Sbjct: 3   MVGLRDVFLVAPAYHHQNAGVISGSDHMNS---NAAAAAALGVGVIPLLTA--------- 62

Query: 61  PPPNQTAEEV-------SDRTRSLKNLKKTHDFGFGKGDSFIAGDKGD-----AGESSMA 120
             P Q  E+        + R ++  N  +T    F   +    G   +     +G S  A
Sbjct: 63  GTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSGSGSGASGTA 122

Query: 121 VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASG 180
            C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++        A+ 
Sbjct: 123 TCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM-----PTGANP 182

Query: 181 DGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSRSFETTSNHQD-ASFKKSLP 240
             GSS S+S+G K+PR++   Q     A SH S S  T  +SFET+S+ QD    +++ P
Sbjct: 183 TAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTS-NTPPQSFETSSSRQDGGGSREAWP 242

Query: 241 GQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLH 286
           GQVRA AVF+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG ++ K G+PS+S LH
Sbjct: 243 GQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQG-LEPKEGFPSMSDLH 290

[Close]

BLAST of Csor.00g301170 vs. TAIR 10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 199.5 bits (506), Expect = 3.6e-51
Identity = 135/307 (43.97%), Postives = 178/307 (57.98%), Query Frame = 0


Query: 1   MLGLRDVLFLAPT---------STSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQ 60
           M+GLRDV  +AP          S SDH +S   ++ AA  + VG+ PLL A         
Sbjct: 90  MVGLRDVFLVAPAYHHQNAGVISGSDHMNS---NAAAAAALGVGVIPLLTA--------- 149

Query: 61  PPPNQTAEEV-------SDRTRSLKNLKKTHDFGFGKGDSFIAGDKGD-----AGESSMA 120
             P Q  E+        + R ++  N  +T    F   +    G   +     +G S  A
Sbjct: 150 GTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSGSGSGASGTA 209

Query: 121 VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASG 180
            C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++        A+ 
Sbjct: 210 TCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM-----PTGANP 269

Query: 181 DGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSRSFETTSNHQD-ASFKKSLP 240
             GSS S+S+G K+PR++   Q     A SH S S  T  +SFET+S+ QD    +++ P
Sbjct: 270 TAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTS-NTPPQSFETSSSRQDGGGSREAWP 329

Query: 241 GQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLH 286
           GQVRA AVF+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG ++ K G+PS+S LH
Sbjct: 330 GQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQG-LEPKEGFPSMSDLH 377

[Close]

BLAST of Csor.00g301170 vs. TAIR 10
Match: AT3G54430.1 (SHI-related sequence 6 )

HSP 1 Score: 139.8 bits (351), Expect = 3.4e-33
Identity = 83/188 (44.15%), Postives = 106/188 (56.38%), Query Frame = 0


Query: 89  DKGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQML 148
           D    GE    VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P+S  R     
Sbjct: 32  DNNTVGEK---VCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATR----- 91

Query: 149 VVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSRSFETTSNH 208
                            SSS   ++ ++ I  QS+P  +                TT++ 
Sbjct: 92  ----------------SSSSPSERKKKLKIDKQSSPNVSL-------------LPTTTSR 151

Query: 209 QDASFKKSLPGQVRAPAVFRYHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGVVDH 268
           Q+  F++ LPG++ APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G VDH
Sbjct: 152 QERGFREGLPGKIEAPAVFKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYG-VDH 181

Query: 269 KNGYPSLS 276
              +P LS
Sbjct: 212 NKAFPCLS 181

[Close]

BLAST of Csor.00g301170 vs. TAIR 10
Match: AT4G36260.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-31
Identity = 84/180 (46.67%), Postives = 110/180 (61.11%), Query Frame = 0


Query: 89  DKGDAGESSMAV---CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRER 148
           D  D   SS ++   CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P +RRRER
Sbjct: 79  DVSDLATSSRSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRER 138

Query: 149 QMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASAS-IATTSRSFET 208
           Q  + M    + SG GG SGS  AG       IP +   P     +S+S + + S   E 
Sbjct: 139 QQQLHM----STSGGGGGSGSGGAGGGGSS--IPKRHRDPTLPGTSSSSRLPSHSAGLEM 198

Query: 209 TSNHQDASFKKSLPGQVRAPAVFRYHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQG 264
                +ASF    PG+V + A+FR  +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG
Sbjct: 199 ----GEASF----PGEVSSDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQG 244

The following BLAST results are available for this feature:

BLAST of Csor.00g301170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CK9	5.1e-50	43.97	Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S...	[more]
Q9M2U4	4.8e-32	44.15	Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1	[more]
O65517	2.0e-30	46.67	Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1	[more]
Q9LQZ5	3.0e-26	38.22	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1	[more]
Q9XGX0	3.9e-26	44.38	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]

BLAST of Csor.00g301170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573801.1	2.40e-202	100.00	Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022945608.1	5.22e-199	99.30	protein SHI RELATED SEQUENCE 6-like [Cucurbita moschata] >KAG7012875.1 Protein L...	[more]
XP_023541249.1	3.02e-198	98.95	protein SHI RELATED SEQUENCE 6-like [Cucurbita pepo subsp. pepo]	[more]
XP_022967015.1	1.27e-195	97.22	protein SHI RELATED SEQUENCE 6-like [Cucurbita maxima]	[more]
XP_038892899.1	5.19e-157	79.41	protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida]	[more]

BLAST of Csor.00g301170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1D4	2.53e-199	99.30	protein SHI RELATED SEQUENCE 6-like OS=Cucurbita moschata OX=3662 GN=LOC11144979...	[more]
A0A6J1HT71	6.14e-196	97.22	protein SHI RELATED SEQUENCE 6-like OS=Cucurbita maxima OX=3661 GN=LOC111466543 ...	[more]
A0A0A0KWX6	3.53e-155	78.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623840 PE=3 SV=1	[more]
A0A1S3BFS5	1.43e-154	78.10	protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo OX=3656 GN=LOC103489517 PE=3 S...	[more]
A0A6J1CEG6	3.71e-154	78.96	protein LATERAL ROOT PRIMORDIUM 1 OS=Momordica charantia OX=3673 GN=LOC111009988...	[more]

BLAST of Csor.00g301170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12330.2	3.6e-51	43.97	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.1	3.6e-51	43.97	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.4	3.6e-51	43.97	Lateral root primordium (LRP) protein-related	[more]
AT3G54430.1	3.4e-33	44.15	SHI-related sequence 6	[more]
AT4G36260.1	1.4e-31	46.67	Lateral root primordium (LRP) protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 217..264 e-value: 2.7E-25 score: 86.0
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 100..142 e-value: 1.9E-24 score: 83.3
None	No IPR available	PFAM	PF05142	DUF702	coord: 99..264 e-value: 4.5E-55 score: 186.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..214
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..216
None	No IPR available	PANTHER	PTHR31604:SF28	PROTEIN SHI RELATED SEQUENCE 6	coord: 1..280
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 1..280

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g301170.m01	Csor.00g301170.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding