Csor.00g301020 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTCAAAAATACGTTTCAATCCGGATTCCTCTCTATATTATATAGCCTCGGGTATGTTTTAATGTCAGTGCTTACAGTCTGTCAAGGGTTTTGTTTTTTGAATTCCAGGAACTGATGCTTTGTTTTATTTTATGTATCCTTTTCTATAGGAGCAAACCGCTTCAGATATGGGATAAAGAAGGTGAATCTGTTCATCTACGGACTGTGGTTTTTTATTTGCATTTGGTTAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTGTTTGGTGTTTTGAGAACTCTGCTGTGGTTTTATTGGGTGATTTGAAGAAACAATGAAGCCTAGTTGTTCACAATACTATGCAATTTAGTTGTGCTAGTTGACAATAAGAGCATAGTTTGGTCTTTAAAGCATCTACTCTGACCTCGAGTGGAGGTTCAAATTTTCACTCCCACTTTGTTGTTCTAAAAGAAAATTCGGGGTATTGGTGTTAGTTCAAGTTGAGGTTCTAAGTTTTCCTATTAATTTTGGAATGCCATGTGGGAATTGGTATGGATTGTTTCTGAGGTTTAAATCCTATTAAGTGGACAGCTTGCATCAATGAGAAGCCTTTTGTTTTCCATGTTTATTATAGTAGAAACCCTTCAATTGCTACATGTCATTTCATATTGGGTTAAAAAGGTTTTCAGTTTCTGCAATATAACTGTTCTAATAGAGAACAGGATATGTATGTTCGCTACCATTTCAATTTTTGGCCTACTTGTTTAAATAATGGGCGATGAAGAATGTTACTCTGCTAGTCTATCTAGGACTTGTATTCCGTAATTTAGCAATTTTGGGGCATGTGCCATTCATGTTCTTGTGGTGTAGATGTTCTTTGATCTTGTACCTGGGATGTTGTGGGACTGTAAAGTTTTTTTTGAGTATGCTAATGAAGCTTAAGGCTGATATGTTTTGGTGGAAATTTCTAGTTTCTAGAGCTAAAGGAAACATGAAATGTTACCAACTTTTGAAAGCATTTTTGTATTCTTTTTTGGCAGTTTCTAATGGCCACATCAAACGCCCTCAGGATGAAGACATCCAATCAAACGTTATTGAAATTGTTGGATCAAAACTTCAGTCTACCTATATAACATGCCCAGCGGACCCAGCTGCTACACTGGGTATAAAATTGCCATTCTTGGTTATAATCGTGAAGAATCTCAAGAAATATTTTACATTTGAGATTCAAGTTCTTGATGATAAGAATGTCAGAAGACGCTTCCGGGCTTCTAATTTTCAAGTGTGTAAGTCTTACCTTTATCTAGCTGCTGTTACTGAAACACTTGTGCACGAATACCACACCCTTAAAAGATAACAACTATTCAATTATTGAATGGCTTTAGTTACCATTGCTTCTATATATGGATATTGTTTGCAGTGACATTTTGCTTGACTAAACTTTTTAATTCTATGAGTTTGGTATAAGATGATGACAATATCCCTTCTATTATGAAGGCTATCACTAGAGTTAAGCCATATATCTGCACCATGCCTCTAAGGATGGATGAAGGGTGGAACCATATCCAATTAAATCTGGCTGACTTAACTCGGAGGGCATATGGCACAAATTATGTCGAGACATTACGAGTTCAGGTACATGCAAACTGTCGCTTGAGGAGGATTTACTTTGCAGATCGCTTGTATTCGGAGGAGGAGCTTCCGCCAGAGTTTAAGTTGTACCTTCCTACACAGGTAATTTTTCAATCCATGCAAACCCTTGAACCAGCATTTTGTTTCTCCATTTAAGGGGTTGTTTTTTTTGGGATAAATTACAAGTTTAATTCCTTGCCTTTTTTTTTTTTTTTTTTTTTGTATTTGGACCCTAAATTTTTTAAGTGTCTAATAGGTTCCTCAACTTCCAAGTTTGTGTCTAATAAGTATTCAAGTTTTTGTCTGATAAGTCAAAGTTCGTGCCTAATGAGTATTTGAACTTTTAATTTTGTGTTTAATTAACTCTTTGACAAAACTAAAGTTTTTAAAAATACGGAAGTTCATTGATTAAATTTGTAATTTTGAAAGTTCAAGAAATTGATAGACTATATTATAATTTAACCATTTTTTTTTTCTCTTTTCCCTCCATTATTTTCTTGCAGAAAGCTTAA ATGTTCAAAAATACGTTTCAATCCGGATTCCTCTCTATATTATATAGCCTCGGGAGCAAACCGCTTCAGATATGGGATAAAGAAGTTTCTAATGGCCACATCAAACGCCCTCAGGATGAAGACATCCAATCAAACGTTATTGAAATTGTTGGATCAAAACTTCAGTCTACCTATATAACATGCCCAGCGGACCCAGCTGCTACACTGGGTATAAAATTGCCATTCTTGGTTATAATCGTGAAGAATCTCAAGAAATATTTTACATTTGAGATTCAAGTTCTTGATGATAAGAATGTCAGAAGACGCTTCCGGGCTTCTAATTTTCAAGCTATCACTAGAGTTAAGCCATATATCTGCACCATGCCTCTAAGGATGGATGAAGGGTGGAACCATATCCAATTAAATCTGGCTGACTTAACTCGGAGGGCATATGGCACAAATTATGTCGAGACATTACGAGTTCAGGTACATGCAAACTGTCGCTTGAGGAGGATTTACTTTGCAGATCGCTTGTATTCGGAGGAGGAGCTTCCGCCAGAGTTTAAGTTGTACCTTCCTACACAGAAAGCTTAA ATGTTCAAAAATACGTTTCAATCCGGATTCCTCTCTATATTATATAGCCTCGGGAGCAAACCGCTTCAGATATGGGATAAAGAAGTTTCTAATGGCCACATCAAACGCCCTCAGGATGAAGACATCCAATCAAACGTTATTGAAATTGTTGGATCAAAACTTCAGTCTACCTATATAACATGCCCAGCGGACCCAGCTGCTACACTGGGTATAAAATTGCCATTCTTGGTTATAATCGTGAAGAATCTCAAGAAATATTTTACATTTGAGATTCAAGTTCTTGATGATAAGAATGTCAGAAGACGCTTCCGGGCTTCTAATTTTCAAGCTATCACTAGAGTTAAGCCATATATCTGCACCATGCCTCTAAGGATGGATGAAGGGTGGAACCATATCCAATTAAATCTGGCTGACTTAACTCGGAGGGCATATGGCACAAATTATGTCGAGACATTACGAGTTCAGGTACATGCAAACTGTCGCTTGAGGAGGATTTACTTTGCAGATCGCTTGTATTCGGAGGAGGAGCTTCCGCCAGAGTTTAAGTTGTACCTTCCTACACAGAAAGCTTAA MFKNTFQSGFLSILYSLGSKPLQIWDKEVSNGHIKRPQDEDIQSNVIEIVGSKLQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEGWNHIQLNLADLTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQKA Homology
BLAST of Csor.00g301020 vs. ExPASy Swiss-Prot
Match: Q9VKV8 (Cilia- and flagella-associated protein 20 OS=Drosophila melanogaster OX=7227 GN=Bug22 PE=2 SV=1) HSP 1 Score: 329.7 bits (844), Expect = 2.2e-89 Identity = 151/189 (79.89%), Postives = 175/189 (92.59%), Query Frame = 0
BLAST of Csor.00g301020 vs. ExPASy Swiss-Prot
Match: A0CDD4 (Cilia- and flagella-associated protein 20 OS=Paramecium tetraurelia OX=5888 GN=CFAP20 PE=3 SV=1) HSP 1 Score: 327.0 bits (837), Expect = 1.4e-88 Identity = 149/189 (78.84%), Postives = 175/189 (92.59%), Query Frame = 0
BLAST of Csor.00g301020 vs. ExPASy Swiss-Prot
Match: Q6B857 (Cilia- and flagella-associated protein 20 OS=Bos taurus OX=9913 GN=CFAP20 PE=2 SV=1) HSP 1 Score: 325.9 bits (834), Expect = 3.1e-88 Identity = 150/188 (79.79%), Postives = 172/188 (91.49%), Query Frame = 0
BLAST of Csor.00g301020 vs. ExPASy Swiss-Prot
Match: Q8BTU1 (Cilia- and flagella-associated protein 20 OS=Mus musculus OX=10090 GN=Cfap20 PE=1 SV=1) HSP 1 Score: 325.9 bits (834), Expect = 3.1e-88 Identity = 150/188 (79.79%), Postives = 172/188 (91.49%), Query Frame = 0
BLAST of Csor.00g301020 vs. ExPASy Swiss-Prot
Match: Q5ZHP3 (Cilia- and flagella-associated protein 20 OS=Gallus gallus OX=9031 GN=CFAP20 PE=2 SV=1) HSP 1 Score: 325.5 bits (833), Expect = 4.1e-88 Identity = 149/188 (79.26%), Postives = 172/188 (91.49%), Query Frame = 0
BLAST of Csor.00g301020 vs. NCBI nr
Match: XP_022944834.1 (cilia- and flagella-associated protein 20 [Cucurbita moschata] >XP_022944835.1 cilia- and flagella-associated protein 20 [Cucurbita moschata] >XP_022944836.1 cilia- and flagella-associated protein 20 [Cucurbita moschata] >XP_023541129.1 cilia- and flagella-associated protein 20 [Cucurbita pepo subsp. pepo] >XP_023541131.1 cilia- and flagella-associated protein 20 [Cucurbita pepo subsp. pepo] >XP_023541132.1 cilia- and flagella-associated protein 20 [Cucurbita pepo subsp. pepo] >KAG6573786.1 Cilia- and flagella-associated protein 20, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 385 bits (989), Expect = 5.32e-135 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of Csor.00g301020 vs. NCBI nr
Match: XP_022966967.1 (cilia- and flagella-associated protein 20 [Cucurbita maxima] >XP_022966968.1 cilia- and flagella-associated protein 20 [Cucurbita maxima] >XP_022966969.1 cilia- and flagella-associated protein 20 [Cucurbita maxima]) HSP 1 Score: 384 bits (985), Expect = 2.17e-134 Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0
BLAST of Csor.00g301020 vs. NCBI nr
Match: XP_022139283.1 (cilia- and flagella-associated protein 20 isoform X2 [Momordica charantia]) HSP 1 Score: 381 bits (978), Expect = 2.53e-133 Identity = 186/190 (97.89%), Postives = 189/190 (99.47%), Query Frame = 0
BLAST of Csor.00g301020 vs. NCBI nr
Match: XP_038892069.1 (cilia- and flagella-associated protein 20 isoform X2 [Benincasa hispida]) HSP 1 Score: 378 bits (971), Expect = 2.96e-132 Identity = 184/190 (96.84%), Postives = 189/190 (99.47%), Query Frame = 0
BLAST of Csor.00g301020 vs. NCBI nr
Match: XP_038892068.1 (cilia- and flagella-associated protein 20 isoform X1 [Benincasa hispida]) HSP 1 Score: 378 bits (971), Expect = 4.38e-132 Identity = 184/190 (96.84%), Postives = 189/190 (99.47%), Query Frame = 0
BLAST of Csor.00g301020 vs. ExPASy TrEMBL
Match: A0A6J1FZ95 (cilia- and flagella-associated protein 20 OS=Cucurbita moschata OX=3662 GN=LOC111449249 PE=4 SV=1) HSP 1 Score: 385 bits (989), Expect = 2.58e-135 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of Csor.00g301020 vs. ExPASy TrEMBL
Match: A0A6J1HPF3 (cilia- and flagella-associated protein 20 OS=Cucurbita maxima OX=3661 GN=LOC111466519 PE=4 SV=1) HSP 1 Score: 384 bits (985), Expect = 1.05e-134 Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0
BLAST of Csor.00g301020 vs. ExPASy TrEMBL
Match: A0A6J1CFC1 (cilia- and flagella-associated protein 20 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010238 PE=4 SV=1) HSP 1 Score: 381 bits (978), Expect = 1.23e-133 Identity = 186/190 (97.89%), Postives = 189/190 (99.47%), Query Frame = 0
BLAST of Csor.00g301020 vs. ExPASy TrEMBL
Match: A0A6J1CDI8 (cilia- and flagella-associated protein 20 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010238 PE=4 SV=1) HSP 1 Score: 376 bits (966), Expect = 8.59e-132 Identity = 186/191 (97.38%), Postives = 189/191 (98.95%), Query Frame = 0
BLAST of Csor.00g301020 vs. ExPASy TrEMBL
Match: A0A1S3BH84 (cilia- and flagella-associated protein 20 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489531 PE=4 SV=1) HSP 1 Score: 375 bits (963), Expect = 2.38e-131 Identity = 182/190 (95.79%), Postives = 188/190 (98.95%), Query Frame = 0
BLAST of Csor.00g301020 vs. TAIR 10
Match: AT3G12300.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF667 (InterPro:IPR007714); Has 373 Blast hits to 371 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 4; Plants - 71; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). ) HSP 1 Score: 352.1 bits (902), Expect = 2.9e-97 Identity = 166/190 (87.37%), Postives = 182/190 (95.79%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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