Csor.00g300200 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g300200
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionComplex 1 LYR protein
LocationCsor_Chr05: 1477546 .. 1478019 (-)
RNA-Seq ExpressionCsor.00g300200
SyntenyCsor.00g300200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCATGAGGTTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAACAAAGTTGGTTTCCACCCTCGACTTCTGCATAATGGTCCAGACACCATTGATGAACTCTTAGACAGACATGTGGTAAAGAAAGAAAAGTCCTTTGATGACGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCACGGAAGGAGTTTGAGGACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGATTGATAAGAAACAAAGTGGTCGAGATCGACCCTGA

mRNA sequence

ATGAGCATGAGGTTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAACAAAGTTGGTTTCCACCCTCGACTTCTGCATAATGGTCCAGACACCATTGATGAACTCTTAGACAGACATGTGGTAAAGAAAGAAAAGTCCTTTGATGACGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCACGGAAGGAGTTTGAGGACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGATTGATAAGAAACAAAGTGGTCGAGATCGACCCTGA

Coding sequence (CDS)

ATGAGCATGAGGTTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAACAAAGTTGGTTTCCACCCTCGACTTCTGCATAATGGTCCAGACACCATTGATGAACTCTTAGACAGACATGTGGTAAAGAAAGAAAAGTCCTTTGATGACGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCACGGAAGGAGTTTGAGGACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGATTGATAAGAAACAAAGTGGTCGAGATCGACCCTGA

Protein sequence

MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP
Homology
BLAST of Csor.00g300200 vs. NCBI nr
Match: XP_022961619.1 (uncharacterized protein LOC111462339 [Cucurbita moschata] >XP_022961620.1 uncharacterized protein LOC111462339 [Cucurbita moschata] >KAG6598519.1 hypothetical protein SDJN03_08297, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 307 bits (787), Expect = 2.77e-105
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0

Query: 1   MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
           MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL
Sbjct: 1   MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60

Query: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
           ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI
Sbjct: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120

Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP 157
           VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP 157

BLAST of Csor.00g300200 vs. NCBI nr
Match: XP_023545212.1 (uncharacterized protein LOC111804691 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 301 bits (770), Expect = 1.08e-102
Identity = 153/157 (97.45%), Postives = 155/157 (98.73%), Query Frame = 0

Query: 1   MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
           MSMRLVEKCVKLSTHKNFLACNK+G+ PR LHNGPDTIDELLDRHVVKKEKSFDDDEEEL
Sbjct: 1   MSMRLVEKCVKLSTHKNFLACNKIGYRPRALHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60

Query: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
           ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI
Sbjct: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120

Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP 157
           VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP 157

BLAST of Csor.00g300200 vs. NCBI nr
Match: KAG7029455.1 (hypothetical protein SDJN02_07794, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 299 bits (766), Expect = 4.57e-102
Identity = 154/158 (97.47%), Postives = 156/158 (98.73%), Query Frame = 0

Query: 1   MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
           MSMRLVEKCVKLSTHKNFLACNK+G+HPR LHNGPDTIDELLDRHVVKKEKSFDDDEEEL
Sbjct: 1   MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60

Query: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
           ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI
Sbjct: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120

Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSG-RDRP 157
           VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSG RDRP
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP 158

BLAST of Csor.00g300200 vs. NCBI nr
Match: XP_022997345.1 (uncharacterized protein LOC111492289 [Cucurbita maxima] >XP_022997346.1 uncharacterized protein LOC111492289 [Cucurbita maxima] >XP_022997347.1 uncharacterized protein LOC111492289 [Cucurbita maxima])

HSP 1 Score: 295 bits (756), Expect = 1.48e-100
Identity = 151/157 (96.18%), Postives = 153/157 (97.45%), Query Frame = 0

Query: 1   MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
           MSMRLVEKCVKLSTHKNFLACNK G+HPR LHNGPDTIDELLD HVVKKEKSFDDDEEEL
Sbjct: 1   MSMRLVEKCVKLSTHKNFLACNKFGYHPRALHNGPDTIDELLDIHVVKKEKSFDDDEEEL 60

Query: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
           ITQRRLTSTRRE+LSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI
Sbjct: 61  ITQRRLTSTRRESLSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120

Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP 157
           VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSG DRP
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGDRP 157

BLAST of Csor.00g300200 vs. NCBI nr
Match: XP_038884246.1 (uncharacterized protein LOC120075144 [Benincasa hispida])

HSP 1 Score: 275 bits (704), Expect = 1.17e-92
Identity = 137/153 (89.54%), Postives = 147/153 (96.08%), Query Frame = 0

Query: 3   MRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELIT 62
           MRLV KC+ LS HKNFL CNK+GFHPR+LHNGPDT+ ELLDRHVVKKEKSFDD+E+ELIT
Sbjct: 1   MRLVGKCLNLSIHKNFLTCNKIGFHPRVLHNGPDTVAELLDRHVVKKEKSFDDEEDELIT 60

Query: 63  QRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVT 122
           QRRLT+TRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDAR+E+DPEIVT
Sbjct: 61  QRRLTTTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARYESDPEIVT 120

Query: 123 RLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRD 155
           RLLIGGRDAVQSALDKLAEKQ QEIDKKQ+GRD
Sbjct: 121 RLLIGGRDAVQSALDKLAEKQMQEIDKKQNGRD 153

BLAST of Csor.00g300200 vs. ExPASy TrEMBL
Match: A0A6J1HEL0 (uncharacterized protein LOC111462339 OS=Cucurbita moschata OX=3662 GN=LOC111462339 PE=4 SV=1)

HSP 1 Score: 307 bits (787), Expect = 1.34e-105
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0

Query: 1   MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
           MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL
Sbjct: 1   MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60

Query: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
           ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI
Sbjct: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120

Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP 157
           VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP 157

BLAST of Csor.00g300200 vs. ExPASy TrEMBL
Match: A0A6J1K786 (uncharacterized protein LOC111492289 OS=Cucurbita maxima OX=3661 GN=LOC111492289 PE=4 SV=1)

HSP 1 Score: 295 bits (756), Expect = 7.16e-101
Identity = 151/157 (96.18%), Postives = 153/157 (97.45%), Query Frame = 0

Query: 1   MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
           MSMRLVEKCVKLSTHKNFLACNK G+HPR LHNGPDTIDELLD HVVKKEKSFDDDEEEL
Sbjct: 1   MSMRLVEKCVKLSTHKNFLACNKFGYHPRALHNGPDTIDELLDIHVVKKEKSFDDDEEEL 60

Query: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
           ITQRRLTSTRRE+LSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI
Sbjct: 61  ITQRRLTSTRRESLSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120

Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP 157
           VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSG DRP
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGDRP 157

BLAST of Csor.00g300200 vs. ExPASy TrEMBL
Match: A0A6J1CRY1 (uncharacterized protein LOC111014019 OS=Momordica charantia OX=3673 GN=LOC111014019 PE=4 SV=1)

HSP 1 Score: 268 bits (684), Expect = 8.92e-90
Identity = 132/155 (85.16%), Postives = 148/155 (95.48%), Query Frame = 0

Query: 1   MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
           M++RLV KC+ LS HK+FLACNK+GFHPR+LHNGPDTIDELLDRHVVKKEKSF+D+++EL
Sbjct: 9   MTIRLVGKCLNLSIHKHFLACNKIGFHPRVLHNGPDTIDELLDRHVVKKEKSFNDEDDEL 68

Query: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
           ITQR LTSTRREALSLYRDI+RATRFFMWPDSRGVLWRDVLR+NARKEFE+AR+E+DPE+
Sbjct: 69  ITQRHLTSTRREALSLYRDIIRATRFFMWPDSRGVLWRDVLRENARKEFEEARYESDPEV 128

Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRD 155
           VTRLLIGGRDAVQSALDKLAEKQ QEIDKKQ G D
Sbjct: 129 VTRLLIGGRDAVQSALDKLAEKQMQEIDKKQHGGD 163

BLAST of Csor.00g300200 vs. ExPASy TrEMBL
Match: A0A5A7VCD6 (Complex 1 LYR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001620 PE=4 SV=1)

HSP 1 Score: 263 bits (672), Expect = 4.74e-88
Identity = 135/156 (86.54%), Postives = 148/156 (94.87%), Query Frame = 0

Query: 1   MSMRLVEKCVKLST-HKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEE 60
           M+MRLV K + LS+  KNFL C+K+GFHPR+LHNGPDT++ELLDRHVVKKEKS DDD ++
Sbjct: 1   MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60

Query: 61  LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPE 120
           LITQRRLTSTRREALSLYRDILRATRFFMWPDS+GVLWRDVLRQNARKEFEDARFE+DPE
Sbjct: 61  LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120

Query: 121 IVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRD 155
           IVTRLLIGGRDAVQSALDKLAEKQR+EIDKKQSGRD
Sbjct: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRD 156

BLAST of Csor.00g300200 vs. ExPASy TrEMBL
Match: A0A1S4DWJ1 (uncharacterized protein LOC103488569 OS=Cucumis melo OX=3656 GN=LOC103488569 PE=4 SV=1)

HSP 1 Score: 263 bits (672), Expect = 4.74e-88
Identity = 135/156 (86.54%), Postives = 148/156 (94.87%), Query Frame = 0

Query: 1   MSMRLVEKCVKLST-HKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEE 60
           M+MRLV K + LS+  KNFL C+K+GFHPR+LHNGPDT++ELLDRHVVKKEKS DDD ++
Sbjct: 1   MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60

Query: 61  LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPE 120
           LITQRRLTSTRREALSLYRDILRATRFFMWPDS+GVLWRDVLRQNARKEFEDARFE+DPE
Sbjct: 61  LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120

Query: 121 IVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRD 155
           IVTRLLIGGRDAVQSALDKLAEKQR+EIDKKQSGRD
Sbjct: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRD 156

BLAST of Csor.00g300200 vs. TAIR 10
Match: AT1G76060.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 187.6 bits (475), Expect = 7.8e-48
Identity = 96/129 (74.42%), Postives = 109/129 (84.50%), Query Frame = 0

Query: 29  RLLHNGPDTIDELLDRHVVKKEKS-FDDDEEELITQRRLTSTRREALSLYRDILRATRFF 88
           R LH GPDT++ELL+RH+ KKEK   D DE E + +RRLTSTRREALSLYRDILRATRFF
Sbjct: 29  RFLHEGPDTVEELLERHLAKKEKPIIDHDEAEFLNRRRLTSTRREALSLYRDILRATRFF 88

Query: 89  MWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEI 148
            W DSRG LWRDVLR+NARKEFE ARFETDPE++TRLLIGG DAV SALDKLAEKQR+ I
Sbjct: 89  TWIDSRGNLWRDVLRENARKEFEAARFETDPEVITRLLIGGSDAVSSALDKLAEKQREMI 148

Query: 149 DKKQSGRDR 157
           +K++ G  R
Sbjct: 149 EKQRRGDQR 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022961619.12.77e-105100.00uncharacterized protein LOC111462339 [Cucurbita moschata] >XP_022961620.1 unchar... [more]
XP_023545212.11.08e-10297.45uncharacterized protein LOC111804691 [Cucurbita pepo subsp. pepo][more]
KAG7029455.14.57e-10297.47hypothetical protein SDJN02_07794, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022997345.11.48e-10096.18uncharacterized protein LOC111492289 [Cucurbita maxima] >XP_022997346.1 uncharac... [more]
XP_038884246.11.17e-9289.54uncharacterized protein LOC120075144 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1HEL01.34e-105100.00uncharacterized protein LOC111462339 OS=Cucurbita moschata OX=3662 GN=LOC1114623... [more]
A0A6J1K7867.16e-10196.18uncharacterized protein LOC111492289 OS=Cucurbita maxima OX=3661 GN=LOC111492289... [more]
A0A6J1CRY18.92e-9085.16uncharacterized protein LOC111014019 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A5A7VCD64.74e-8886.54Complex 1 LYR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82... [more]
A0A1S4DWJ14.74e-8886.54uncharacterized protein LOC103488569 OS=Cucumis melo OX=3656 GN=LOC103488569 PE=... [more]
Match NameE-valueIdentityDescription
AT1G76060.17.8e-4874.42LYR family of Fe/S cluster biogenesis protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 71..131
e-value: 6.8E-12
score: 45.3
NoneNo IPR availablePANTHERPTHR47484COMPLEX 1 PROTEIN CONTAINING PROTEIN, EXPRESSEDcoord: 6..156
NoneNo IPR availableCDDcd20267Complex1_LYR_LYRM7coord: 73..146
e-value: 3.05276E-17
score: 69.5147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g300200.m01Csor.00g300200.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032981 mitochondrial respiratory chain complex I assembly
cellular_component GO:0005759 mitochondrial matrix