Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCATGAGGTTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAACAAAGTTGGTTTCCACCCTCGACTTCTGCATAATGGTCCAGACACCATTGATGAACTCTTAGACAGACATGTGGTAAAGAAAGAAAAGTCCTTTGATGACGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCACGGAAGGAGTTTGAGGACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGATTGATAAGAAACAAAGTGGTCGAGATCGACCCTGA
mRNA sequence
ATGAGCATGAGGTTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAACAAAGTTGGTTTCCACCCTCGACTTCTGCATAATGGTCCAGACACCATTGATGAACTCTTAGACAGACATGTGGTAAAGAAAGAAAAGTCCTTTGATGACGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCACGGAAGGAGTTTGAGGACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGATTGATAAGAAACAAAGTGGTCGAGATCGACCCTGA
Coding sequence (CDS)
ATGAGCATGAGGTTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAACAAAGTTGGTTTCCACCCTCGACTTCTGCATAATGGTCCAGACACCATTGATGAACTCTTAGACAGACATGTGGTAAAGAAAGAAAAGTCCTTTGATGACGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCACGGAAGGAGTTTGAGGACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGATTGATAAGAAACAAAGTGGTCGAGATCGACCCTGA
Protein sequence
MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP
Homology
BLAST of Csor.00g300200 vs. NCBI nr
Match:
XP_022961619.1 (uncharacterized protein LOC111462339 [Cucurbita moschata] >XP_022961620.1 uncharacterized protein LOC111462339 [Cucurbita moschata] >KAG6598519.1 hypothetical protein SDJN03_08297, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 307 bits (787), Expect = 2.77e-105
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query: 1 MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL
Sbjct: 1 MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI
Sbjct: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP 157
VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP 157
BLAST of Csor.00g300200 vs. NCBI nr
Match:
XP_023545212.1 (uncharacterized protein LOC111804691 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 301 bits (770), Expect = 1.08e-102
Identity = 153/157 (97.45%), Postives = 155/157 (98.73%), Query Frame = 0
Query: 1 MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
MSMRLVEKCVKLSTHKNFLACNK+G+ PR LHNGPDTIDELLDRHVVKKEKSFDDDEEEL
Sbjct: 1 MSMRLVEKCVKLSTHKNFLACNKIGYRPRALHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI
Sbjct: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP 157
VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP 157
BLAST of Csor.00g300200 vs. NCBI nr
Match:
KAG7029455.1 (hypothetical protein SDJN02_07794, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 299 bits (766), Expect = 4.57e-102
Identity = 154/158 (97.47%), Postives = 156/158 (98.73%), Query Frame = 0
Query: 1 MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
MSMRLVEKCVKLSTHKNFLACNK+G+HPR LHNGPDTIDELLDRHVVKKEKSFDDDEEEL
Sbjct: 1 MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI
Sbjct: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSG-RDRP 157
VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSG RDRP
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP 158
BLAST of Csor.00g300200 vs. NCBI nr
Match:
XP_022997345.1 (uncharacterized protein LOC111492289 [Cucurbita maxima] >XP_022997346.1 uncharacterized protein LOC111492289 [Cucurbita maxima] >XP_022997347.1 uncharacterized protein LOC111492289 [Cucurbita maxima])
HSP 1 Score: 295 bits (756), Expect = 1.48e-100
Identity = 151/157 (96.18%), Postives = 153/157 (97.45%), Query Frame = 0
Query: 1 MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
MSMRLVEKCVKLSTHKNFLACNK G+HPR LHNGPDTIDELLD HVVKKEKSFDDDEEEL
Sbjct: 1 MSMRLVEKCVKLSTHKNFLACNKFGYHPRALHNGPDTIDELLDIHVVKKEKSFDDDEEEL 60
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
ITQRRLTSTRRE+LSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI
Sbjct: 61 ITQRRLTSTRRESLSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP 157
VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSG DRP
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGDRP 157
BLAST of Csor.00g300200 vs. NCBI nr
Match:
XP_038884246.1 (uncharacterized protein LOC120075144 [Benincasa hispida])
HSP 1 Score: 275 bits (704), Expect = 1.17e-92
Identity = 137/153 (89.54%), Postives = 147/153 (96.08%), Query Frame = 0
Query: 3 MRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELIT 62
MRLV KC+ LS HKNFL CNK+GFHPR+LHNGPDT+ ELLDRHVVKKEKSFDD+E+ELIT
Sbjct: 1 MRLVGKCLNLSIHKNFLTCNKIGFHPRVLHNGPDTVAELLDRHVVKKEKSFDDEEDELIT 60
Query: 63 QRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVT 122
QRRLT+TRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDAR+E+DPEIVT
Sbjct: 61 QRRLTTTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARYESDPEIVT 120
Query: 123 RLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRD 155
RLLIGGRDAVQSALDKLAEKQ QEIDKKQ+GRD
Sbjct: 121 RLLIGGRDAVQSALDKLAEKQMQEIDKKQNGRD 153
BLAST of Csor.00g300200 vs. ExPASy TrEMBL
Match:
A0A6J1HEL0 (uncharacterized protein LOC111462339 OS=Cucurbita moschata OX=3662 GN=LOC111462339 PE=4 SV=1)
HSP 1 Score: 307 bits (787), Expect = 1.34e-105
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query: 1 MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL
Sbjct: 1 MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI
Sbjct: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP 157
VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP 157
BLAST of Csor.00g300200 vs. ExPASy TrEMBL
Match:
A0A6J1K786 (uncharacterized protein LOC111492289 OS=Cucurbita maxima OX=3661 GN=LOC111492289 PE=4 SV=1)
HSP 1 Score: 295 bits (756), Expect = 7.16e-101
Identity = 151/157 (96.18%), Postives = 153/157 (97.45%), Query Frame = 0
Query: 1 MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
MSMRLVEKCVKLSTHKNFLACNK G+HPR LHNGPDTIDELLD HVVKKEKSFDDDEEEL
Sbjct: 1 MSMRLVEKCVKLSTHKNFLACNKFGYHPRALHNGPDTIDELLDIHVVKKEKSFDDDEEEL 60
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
ITQRRLTSTRRE+LSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI
Sbjct: 61 ITQRRLTSTRRESLSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP 157
VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSG DRP
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGDRP 157
BLAST of Csor.00g300200 vs. ExPASy TrEMBL
Match:
A0A6J1CRY1 (uncharacterized protein LOC111014019 OS=Momordica charantia OX=3673 GN=LOC111014019 PE=4 SV=1)
HSP 1 Score: 268 bits (684), Expect = 8.92e-90
Identity = 132/155 (85.16%), Postives = 148/155 (95.48%), Query Frame = 0
Query: 1 MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
M++RLV KC+ LS HK+FLACNK+GFHPR+LHNGPDTIDELLDRHVVKKEKSF+D+++EL
Sbjct: 9 MTIRLVGKCLNLSIHKHFLACNKIGFHPRVLHNGPDTIDELLDRHVVKKEKSFNDEDDEL 68
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
ITQR LTSTRREALSLYRDI+RATRFFMWPDSRGVLWRDVLR+NARKEFE+AR+E+DPE+
Sbjct: 69 ITQRHLTSTRREALSLYRDIIRATRFFMWPDSRGVLWRDVLRENARKEFEEARYESDPEV 128
Query: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRD 155
VTRLLIGGRDAVQSALDKLAEKQ QEIDKKQ G D
Sbjct: 129 VTRLLIGGRDAVQSALDKLAEKQMQEIDKKQHGGD 163
BLAST of Csor.00g300200 vs. ExPASy TrEMBL
Match:
A0A5A7VCD6 (Complex 1 LYR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001620 PE=4 SV=1)
HSP 1 Score: 263 bits (672), Expect = 4.74e-88
Identity = 135/156 (86.54%), Postives = 148/156 (94.87%), Query Frame = 0
Query: 1 MSMRLVEKCVKLST-HKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEE 60
M+MRLV K + LS+ KNFL C+K+GFHPR+LHNGPDT++ELLDRHVVKKEKS DDD ++
Sbjct: 1 MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60
Query: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPE 120
LITQRRLTSTRREALSLYRDILRATRFFMWPDS+GVLWRDVLRQNARKEFEDARFE+DPE
Sbjct: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120
Query: 121 IVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRD 155
IVTRLLIGGRDAVQSALDKLAEKQR+EIDKKQSGRD
Sbjct: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRD 156
BLAST of Csor.00g300200 vs. ExPASy TrEMBL
Match:
A0A1S4DWJ1 (uncharacterized protein LOC103488569 OS=Cucumis melo OX=3656 GN=LOC103488569 PE=4 SV=1)
HSP 1 Score: 263 bits (672), Expect = 4.74e-88
Identity = 135/156 (86.54%), Postives = 148/156 (94.87%), Query Frame = 0
Query: 1 MSMRLVEKCVKLST-HKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEE 60
M+MRLV K + LS+ KNFL C+K+GFHPR+LHNGPDT++ELLDRHVVKKEKS DDD ++
Sbjct: 1 MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60
Query: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPE 120
LITQRRLTSTRREALSLYRDILRATRFFMWPDS+GVLWRDVLRQNARKEFEDARFE+DPE
Sbjct: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120
Query: 121 IVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRD 155
IVTRLLIGGRDAVQSALDKLAEKQR+EIDKKQSGRD
Sbjct: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRD 156
BLAST of Csor.00g300200 vs. TAIR 10
Match:
AT1G76060.1 (LYR family of Fe/S cluster biogenesis protein )
HSP 1 Score: 187.6 bits (475), Expect = 7.8e-48
Identity = 96/129 (74.42%), Postives = 109/129 (84.50%), Query Frame = 0
Query: 29 RLLHNGPDTIDELLDRHVVKKEKS-FDDDEEELITQRRLTSTRREALSLYRDILRATRFF 88
R LH GPDT++ELL+RH+ KKEK D DE E + +RRLTSTRREALSLYRDILRATRFF
Sbjct: 29 RFLHEGPDTVEELLERHLAKKEKPIIDHDEAEFLNRRRLTSTRREALSLYRDILRATRFF 88
Query: 89 MWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEI 148
W DSRG LWRDVLR+NARKEFE ARFETDPE++TRLLIGG DAV SALDKLAEKQR+ I
Sbjct: 89 TWIDSRGNLWRDVLRENARKEFEAARFETDPEVITRLLIGGSDAVSSALDKLAEKQREMI 148
Query: 149 DKKQSGRDR 157
+K++ G R
Sbjct: 149 EKQRRGDQR 157
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_022961619.1 | 2.77e-105 | 100.00 | uncharacterized protein LOC111462339 [Cucurbita moschata] >XP_022961620.1 unchar... | [more] |
XP_023545212.1 | 1.08e-102 | 97.45 | uncharacterized protein LOC111804691 [Cucurbita pepo subsp. pepo] | [more] |
KAG7029455.1 | 4.57e-102 | 97.47 | hypothetical protein SDJN02_07794, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_022997345.1 | 1.48e-100 | 96.18 | uncharacterized protein LOC111492289 [Cucurbita maxima] >XP_022997346.1 uncharac... | [more] |
XP_038884246.1 | 1.17e-92 | 89.54 | uncharacterized protein LOC120075144 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1HEL0 | 1.34e-105 | 100.00 | uncharacterized protein LOC111462339 OS=Cucurbita moschata OX=3662 GN=LOC1114623... | [more] |
A0A6J1K786 | 7.16e-101 | 96.18 | uncharacterized protein LOC111492289 OS=Cucurbita maxima OX=3661 GN=LOC111492289... | [more] |
A0A6J1CRY1 | 8.92e-90 | 85.16 | uncharacterized protein LOC111014019 OS=Momordica charantia OX=3673 GN=LOC111014... | [more] |
A0A5A7VCD6 | 4.74e-88 | 86.54 | Complex 1 LYR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82... | [more] |
A0A1S4DWJ1 | 4.74e-88 | 86.54 | uncharacterized protein LOC103488569 OS=Cucumis melo OX=3656 GN=LOC103488569 PE=... | [more] |
Match Name | E-value | Identity | Description | |
AT1G76060.1 | 7.8e-48 | 74.42 | LYR family of Fe/S cluster biogenesis protein | [more] |